Guide to the Human Genome
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Name: LOC646043 Sequence: fasta or formatted (168aa) NCBI GI: 169211979
Description:

PREDICTED: hypothetical protein

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         11           2
 C cysteine            6.0         10           1
 D aspartate           7.1         12           2
 E glutamate          10.1         17           2
 F phenylalanine       4.8          8           2
 G glycine             4.2          7           1
 H histidine           1.8          3           1
 I isoleucine          6.0         10           1
 K lysine              7.1         12           2
 L leucine             5.4          9           1
 M methionine          2.4          4           1
 N asparagine          4.2          7           1
 P proline             4.8          8           1
 Q glutamine           4.8          8           1
 R arginine            3.6          6           1
 S serine              3.0          5           2
 T threonine           5.4          9           1
 V valine              6.0         10           1
 W tryptophan          0.6          1           1
 Y tyrosine            6.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294340          0.970   PREDICTED: hypothetical protein XP_002344108 
BPTF                  0.350   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.350   bromodomain PHD finger transcription factor isoform ...
PHF2                  0.084   PHD finger protein 2 
PHF8                  0.078   PHD finger protein 8 
JHDM1D                0.072   jumonji C domain containing histone demethylase 1 ho...
CXXC1                 0.069   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.069   CXXC finger 1 (PHD domain) isoform 2 
PHF3                  0.054   PHD finger protein 3 
DIDO1                 0.054   death inducer-obliterator 1 isoform c 
DIDO1                 0.054   death inducer-obliterator 1 isoform b 
DIDO1                 0.054   death inducer-obliterator 1 isoform a 
DIDO1                 0.054   death inducer-obliterator 1 isoform a 
CECR2                 0.051   cat eye syndrome chromosome region, candidate 2 [Ho...
KAT2A                 0.042   general control of amino acid synthesis 5-like 2 [H...
BRD8                  0.033   bromodomain containing 8 isoform 2 
TRIM24                0.033   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.033   transcriptional intermediary factor 1 alpha isoform ...
KAT2B                 0.030   K(lysine) acetyltransferase 2B 
TRIM33                0.030   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.030   tripartite motif-containing 33 protein isoform alpha...
ATAD2                 0.030   ATPase family, AAA domain containing 2 
TAF3                  0.027   RNA polymerase II transcription factor TAFII140 [Ho...
PHF20                 0.024   PHD finger protein 20 
MLL                   0.024   myeloid/lymphoid or mixed-lineage leukemia protein [...
KIF2C                 0.024   kinesin family member 2C 
KDM5B                 0.021   jumonji, AT rich interactive domain 1B 
KDM5A                 0.021   retinoblastoma binding protein 2 isoform 1 
BRD4                  0.021   bromodomain-containing protein 4 isoform short 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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