Guide to the Human Genome
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Name: SOCS7 Sequence: fasta or formatted (581aa) NCBI GI: 53831997
Description:

suppressor of cytokine signaling 7

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         36           3
 C cysteine            2.2         13           2
 D aspartate           3.8         22           2
 E glutamate           6.2         36           3
 F phenylalanine       3.4         20           1
 G glycine             8.8         51           6
 H histidine           2.1         12           2
 I isoleucine          2.6         15           1
 K lysine              3.8         22           1
 L leucine            11.4         66           3
 M methionine          1.2          7           1
 N asparagine          1.0          6           1
 P proline            15.1         88           8
 Q glutamine           5.3         31           8
 R arginine            6.9         40           2
 S serine              9.5         55           3
 T threonine           3.6         21           1
 V valine              4.1         24           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.9         11           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppressor of cytokine signaling 7 
SOCS6                 0.124   suppressor of cytokine signaling 6 
SOCS2                 0.050   suppressor of cytokine signaling-2 
SOCS4                 0.046   suppressor of cytokine signaling 4 
SOCS4                 0.046   suppressor of cytokine signaling 4 
CISH                  0.043   cytokine-inducible SH2-containing protein isoform 1...
CISH                  0.043   cytokine-inducible SH2-containing protein isoform 2 ...
SOCS5                 0.042   suppressor of cytokine signaling 5 
SOCS5                 0.042   suppressor of cytokine signaling 5 
SOCS3                 0.033   suppressor of cytokine signaling 3 
MYPOP                 0.030   Myb protein P42POP 
SHANK1                0.030   SH3 and multiple ankyrin repeat domains 1 
SOCS1                 0.026   suppressor of cytokine signaling 1 
TAF4                  0.025   TBP-associated factor 4 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein LOC80164 
BCL9L                 0.025   B-cell CLL/lymphoma 9-like 
LMTK3                 0.025   lemur tyrosine kinase 3 
PRB3                  0.025   proline-rich protein BstNI subfamily 3 precursor [H...
GGN                   0.025   gametogenetin 
ABI1                  0.024   abl-interactor 1 isoform a 
KIAA0754              0.024   hypothetical protein LOC643314 
PIK3R2                0.023   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
SMARCC1               0.023   SWI/SNF-related matrix-associated actin-dependent r...
LOC100287524          0.023   PREDICTED: hypothetical protein XP_002342307 
SEMA6C                0.023   semaphorin Y 
WIPF3                 0.023   WAS/WASL interacting protein family, member 3 [Homo...
MEX3D                 0.023   ring finger and KH domain containing 1 
PIK3R3                0.022   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
PIK3R3                0.022   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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