Guide to the Human Genome
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Name: NANOS2 Sequence: fasta or formatted (138aa) NCBI GI: 71143121
Description:

nanos homolog 2

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          7           1
 C cysteine            4.3          6           1
 D aspartate           3.6          5           1
 E glutamate           3.6          5           2
 F phenylalanine       2.2          3           1
 G glycine            12.3         17           2
 H histidine           3.6          5           1
 I isoleucine          2.2          3           1
 K lysine              3.6          5           1
 L leucine             9.4         13           1
 M methionine          1.4          2           1
 N asparagine          4.3          6           1
 P proline             8.0         11           2
 Q glutamine           7.2         10           2
 R arginine            7.2         10           2
 S serine              6.5          9           2
 T threonine           3.6          5           1
 V valine              6.5          9           3
 W tryptophan          1.4          2           1
 Y tyrosine            3.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nanos homolog 2 
NANOS3                0.344   nanos homolog 3 
NANOS1                0.223   nanos homolog 1 
ZNF219                0.029   zinc finger protein 219 
ZNF219                0.029   zinc finger protein 219 
ZNF219                0.029   zinc finger protein 219 
E2F3                  0.022   E2F transcription factor 3 
LOC100287824          0.022   PREDICTED: hypothetical protein XP_002342669 
RAI1                  0.018   retinoic acid induced 1 
TRPS1                 0.018   zinc finger transcription factor TRPS1 
ZNF521                0.018   zinc finger protein 521 
LOC646043             0.015   PREDICTED: hypothetical protein 
SOCS7                 0.011   suppressor of cytokine signaling 7 
EWSR1                 0.011   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.011   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.011   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.011   Ewing sarcoma breakpoint region 1 isoform 2 
DUT                   0.011   deoxyuridine triphosphatase isoform 1 precursor [Hom...
KHSRP                 0.011   KH-type splicing regulatory protein 
EP400                 0.011   E1A binding protein p400 
DSCAM                 0.011   Down syndrome cell adhesion molecule isoform CHD2-42...
PBXIP1                0.011   pre-B-cell leukemia homeobox interacting protein 1 [...
TRIM66                0.011   tripartite motif-containing 66 
COL5A3                0.011   collagen, type V, alpha 3 preproprotein 
SHPRH                 0.011   SNF2 histone linker PHD RING helicase isoform a [Ho...
SHPRH                 0.011   SNF2 histone linker PHD RING helicase isoform b [Hom...
ZNF536                0.011   zinc finger protein 536 
C7orf46               0.011   hypothetical protein LOC340277 isoform 2 
C7orf46               0.011   hypothetical protein LOC340277 isoform 1 
LOC100292273          0.007   PREDICTED: similar to hCG2013141 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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