Guide to the Human Genome
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Name: TTC33 Sequence: fasta or formatted (262aa) NCBI GI: 7110679
Description:

tetratricopeptide repeat domain 33

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         31           2
 C cysteine            0.8          2           1
 D aspartate           5.0         13           1
 E glutamate          11.1         29           1
 F phenylalanine       2.7          7           1
 G glycine             4.2         11           1
 H histidine           2.3          6           1
 I isoleucine          6.1         16           2
 K lysine              8.8         23           2
 L leucine             6.5         17           2
 M methionine          2.7          7           1
 N asparagine          2.7          7           1
 P proline             3.8         10           2
 Q glutamine           5.7         15           2
 R arginine            3.8         10           2
 S serine              7.3         19           1
 T threonine           4.2         11           1
 V valine              6.5         17           2
 W tryptophan          2.7          7           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 33 
LONRF3                0.064   LON peptidase N-terminal domain and ring finger 3 is...
SGTB                  0.050   small glutamine-rich tetratricopeptide repeat (TPR)-...
LONRF3                0.050   LON peptidase N-terminal domain and ring finger 3 is...
LONRF2                0.044   LON peptidase N-terminal domain and ring finger 2 [...
TMTC1                 0.040   transmembrane and tetratricopeptide repeat containin...
OGT                   0.038   O-linked GlcNAc transferase isoform 2 
OGT                   0.038   O-linked GlcNAc transferase isoform 1 
TTC31                 0.036   tetratricopeptide repeat domain 31 
PPP5C                 0.032   protein phosphatase 5, catalytic subunit 
ST13                  0.032   heat shock 70kD protein binding protein 
TANC1                 0.030   tetratricopeptide repeat, ankyrin repeat and coiled...
LOC653889             0.028   PREDICTED: similar to U5 snRNP-associated 102 kDa p...
PRPF6                 0.028   PRP6 pre-mRNA processing factor 6 homolog 
CDC27                 0.028   cell division cycle protein 27 isoform 1 
CDC27                 0.028   cell division cycle protein 27 isoform 2 
TTC12                 0.028   tetratricopeptide repeat domain 12 
TMTC4                 0.026   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.026   transmembrane and tetratricopeptide repeat containi...
TANC2                 0.026   tetratricopeptide repeat, ankyrin repeat and coiled...
SPAG1                 0.024   sperm associated antigen 1 
SPAG1                 0.024   sperm associated antigen 1 
TOMM34                0.024   translocase of outer mitochondrial membrane 34 [Homo...
TTC27                 0.024   tetratricopeptide repeat domain 27 
UBTF                  0.022   upstream binding transcription factor, RNA polymera...
UBTF                  0.022   upstream binding transcription factor, RNA polymera...
UBTF                  0.022   upstream binding transcription factor, RNA polymerase...
RPAP3                 0.020   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.020   RNA polymerase II associated protein 3 isoform 1 [H...
PEX5                  0.020   peroxisomal biogenesis factor 5 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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