Guide to the Human Genome
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Name: PRPF6 Sequence: fasta or formatted (941aa) NCBI GI: 40807485
Description:

PRP6 pre-mRNA processing factor 6 homolog

Referenced in:

Capping and Splicing
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         99           2
 C cysteine            1.5         14           2
 D aspartate           5.5         52           4
 E glutamate           9.4         88           3
 F phenylalanine       2.1         20           2
 G glycine             5.3         50           2
 H histidine           2.1         20           2
 I isoleucine          4.5         42           2
 K lysine              7.5         71           4
 L leucine             9.1         86           3
 M methionine          2.6         24           2
 N asparagine          4.0         38           1
 P proline             5.0         47           2
 Q glutamine           3.9         37           3
 R arginine            8.1         76           2
 S serine              4.7         44           2
 T threonine           4.5         42           2
 V valine              5.2         49           2
 W tryptophan          2.3         22           1
 Y tyrosine            2.1         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRP6 pre-mRNA processing factor 6 homolog 
LOC653889             0.416   PREDICTED: similar to U5 snRNP-associated 102 kDa p...
CRNKL1                0.035   crooked neck-like 1 protein 
PDCD11                0.015   programmed cell death 11 
PRPF39                0.014   PRP39 pre-mRNA processing factor 39 homolog 
TMTC1                 0.012   transmembrane and tetratricopeptide repeat containin...
XAB2                  0.012   XPA binding protein 2 
GPS2                  0.010   G protein pathway suppressor 2 
TTC16                 0.009   tetratricopeptide repeat domain 16 
DDX23                 0.009   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
TNNT3                 0.009   troponin T3, skeletal, fast isoform 2 
OGT                   0.009   O-linked GlcNAc transferase isoform 2 
OGT                   0.009   O-linked GlcNAc transferase isoform 1 
NEXN                  0.009   nexilin (F actin binding protein) 
HRC                   0.008   histidine rich calcium binding protein precursor [Hom...
TNNT3                 0.007   troponin T3, skeletal, fast isoform 1 
UBXN4                 0.007   UBX domain containing 2 
TTC33                 0.007   tetratricopeptide repeat domain 33 
ENAH                  0.007   enabled homolog isoform a 
ENAH                  0.007   enabled homolog isoform b 
CWC15                 0.007   CWC15 homolog 
TMTC3                 0.007   transmembrane and tetratricopeptide repeat containi...
TNNT3                 0.007   troponin T3, skeletal, fast isoform 3 
TNNT3                 0.007   troponin T3, skeletal, fast isoform 4 
MYH4                  0.007   myosin, heavy polypeptide 4, skeletal muscle 
TTC37                 0.006   tetratricopeptide repeat domain 37 
MYH8                  0.006   myosin, heavy chain 8, skeletal muscle, perinatal [...
ANKRD17               0.006   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.006   ankyrin repeat domain protein 17 isoform b 
MSN                   0.006   moesin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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