PRPF6 27625

Name: PRPF6	Sequence: fasta or formatted (941aa)		NCBI GI: 40807485
Description: PRP6 pre-mRNA processing factor 6 homolog		Referenced in: Capping and Splicing Tetratricopeptide Domains
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.5 99 2 C cysteine 1.5 14 2 D aspartate 5.5 52 4 E glutamate 9.4 88 3 F phenylalanine 2.1 20 2 G glycine 5.3 50 2 H histidine 2.1 20 2 I isoleucine 4.5 42 2 K lysine 7.5 71 4 L leucine 9.1 86 3 M methionine 2.6 24 2 N asparagine 4.0 38 1 P proline 5.0 47 2 Q glutamine 3.9 37 3 R arginine 8.1 76 2 S serine 4.7 44 2 T threonine 4.5 42 2 V valine 5.2 49 2 W tryptophan 2.3 22 1 Y tyrosine 2.1 20 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PRP6 pre-mRNA processing factor 6 homolog LOC653889 0.416 PREDICTED: similar to U5 snRNP-associated 102 kDa p... CRNKL1 0.035 crooked neck-like 1 protein PDCD11 0.015 programmed cell death 11 PRPF39 0.014 PRP39 pre-mRNA processing factor 39 homolog TMTC1 0.012 transmembrane and tetratricopeptide repeat containin... XAB2 0.012 XPA binding protein 2 GPS2 0.010 G protein pathway suppressor 2 TTC16 0.009 tetratricopeptide repeat domain 16 DDX23 0.009 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 TNNT3 0.009 troponin T3, skeletal, fast isoform 2 OGT 0.009 O-linked GlcNAc transferase isoform 2 OGT 0.009 O-linked GlcNAc transferase isoform 1 NEXN 0.009 nexilin (F actin binding protein) HRC 0.008 histidine rich calcium binding protein precursor [Hom... TNNT3 0.007 troponin T3, skeletal, fast isoform 1 UBXN4 0.007 UBX domain containing 2 TTC33 0.007 tetratricopeptide repeat domain 33 ENAH 0.007 enabled homolog isoform a ENAH 0.007 enabled homolog isoform b CWC15 0.007 CWC15 homolog TMTC3 0.007 transmembrane and tetratricopeptide repeat containi... TNNT3 0.007 troponin T3, skeletal, fast isoform 3 TNNT3 0.007 troponin T3, skeletal, fast isoform 4 MYH4 0.007 myosin, heavy polypeptide 4, skeletal muscle TTC37 0.006 tetratricopeptide repeat domain 37 MYH8 0.006 myosin, heavy chain 8, skeletal muscle, perinatal [... ANKRD17 0.006 ankyrin repeat domain protein 17 isoform a ANKRD17 0.006 ankyrin repeat domain protein 17 isoform b MSN 0.006 moesin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.