Guide to the Human Genome
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Name: C3orf70 Sequence: fasta or formatted (250aa) NCBI GI: 70608185
Description:

hypothetical protein LOC285382

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         18           3
 C cysteine            5.6         14           2
 D aspartate           5.6         14           1
 E glutamate           9.6         24           2
 F phenylalanine       2.4          6           1
 G glycine             3.2          8           1
 H histidine           4.4         11           1
 I isoleucine          5.2         13           1
 K lysine              4.4         11           1
 L leucine             6.0         15           2
 M methionine          2.4          6           1
 N asparagine          2.0          5           1
 P proline             8.8         22           2
 Q glutamine           4.0         10           1
 R arginine            3.2          8           2
 S serine             13.2         33           3
 T threonine           4.8         12           2
 V valine              3.6          9           1
 W tryptophan          1.6          4           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285382 
KDM6B                 0.024   lysine (K)-specific demethylase 6B 
C10orf140             0.018   hypothetical protein LOC387640 
EP300                 0.016   E1A binding protein p300 
ASH1L                 0.016   absent, small, or homeotic 1-like 
DUSP7                 0.012   dual specificity phosphatase 7 
GIT2                  0.012   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.012   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.012   G protein-coupled receptor kinase interacting ArfGAP...
CHD1                  0.012   chromodomain helicase DNA binding protein 1 
NBPF10                0.010   hypothetical protein LOC100132406 
DOCK10                0.010   dedicator of cytokinesis 10 
CWC22                 0.010   CWC22 spliceosome-associated protein homolog 
AFF2                  0.010   fragile X mental retardation 2 
LOC728597             0.010   PREDICTED: doublecortin domain-containing protein E...
NBPF3                 0.010   neuroblastoma breakpoint family, member 3 
BRD2                  0.010   bromodomain containing 2 
BRD2                  0.010   bromodomain containing 2 
ITGB6                 0.010   integrin, beta 6 
ZFHX3                 0.010   AT-binding transcription factor 1 
MDM2                  0.008   mouse double minute 2 homolog isoform MDM2i 
LSG1                  0.008   large subunit GTPase 1 
NAP1L1                0.008   nucleosome assembly protein 1-like 1 
NAP1L1                0.008   nucleosome assembly protein 1-like 1 
OBSCN                 0.008   obscurin, cytoskeletal calmodulin and titin-interac...
MAGEA9B               0.008   melanoma antigen family A, 9 -like 
MAGEA9                0.008   melanoma antigen family A, 9 
SHKBP1                0.008   SH3KBP1 binding protein 1 
NBPF14                0.008   hypothetical protein LOC25832 
NBPF15                0.008   hypothetical protein LOC284565 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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