Guide to the Human Genome
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Name: PREB Sequence: fasta or formatted (417aa) NCBI GI: 7019503
Description:

prolactin regulatory element binding protein

Referenced in:

Growth Hormone and Related Hormones
Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         36           2
 C cysteine            2.4         10           1
 D aspartate           4.1         17           1
 E glutamate           5.3         22           1
 F phenylalanine       3.8         16           1
 G glycine             9.4         39           4
 H histidine           3.4         14           1
 I isoleucine          2.9         12           2
 K lysine              4.3         18           2
 L leucine            13.9         58           5
 M methionine          0.5          2           1
 N asparagine          2.2          9           1
 P proline             5.5         23           3
 Q glutamine           6.2         26           3
 R arginine            5.5         23           3
 S serine              5.8         24           2
 T threonine           5.5         23           1
 V valine              7.4         31           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prolactin regulatory element binding protein 
TAF5L                 0.027   PCAF associated factor 65 beta isoform a 
WDR91                 0.026   WD repeat domain 91 
WDR69                 0.026   WD repeat domain 69 
APAF1                 0.024   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.024   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.024   apoptotic peptidase activating factor 1 isoform b [Ho...
APAF1                 0.024   apoptotic peptidase activating factor 1 isoform a [Ho...
WDHD1                 0.024   WD repeat and HMG-box DNA binding protein 1 isoform 1...
WSB1                  0.024   WD repeat and SOCS box-containing 1 isoform 1 
WSB2                  0.022   WD SOCS-box protein 2 
BRWD1                 0.021   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.021   bromodomain and WD repeat domain containing 1 isofor...
PAK1IP1               0.021   PAK1 interacting protein 1 
AAMP                  0.021   angio-associated, migratory cell protein 
SMU1                  0.018   smu-1 suppressor of mec-8 and unc-52 homolog 
WDSUB1                0.018   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.018   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.018   WD repeat, sterile alpha motif and U-box domain con...
FZR1                  0.018   Fzr1 protein isoform 1 
FZR1                  0.018   Fzr1 protein isoform 3 
FZR1                  0.018   Fzr1 protein isoform 2 
WDR36                 0.018   WD repeat domain 36 
RRP9                  0.018   RNA, U3 small nucleolar interacting protein 2 
FBXW11                0.017   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.017   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.017   F-box and WD repeat domain containing 11 isoform B [...
TAF5                  0.017   TBP-associated factor 5 
WDR3                  0.017   WD repeat-containing protein 3 
PRPF4                 0.017   PRP4 pre-mRNA processing factor 4 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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