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Search of human proteins with 13654278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13654278 SRA stem-loop-interacting RNA-binding protein [Homo
sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13654278 SRA stem-loop-interacting RNA-binding protein [Homo ... 224 2e-59
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 55 9e-09
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 55 9e-09
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 55 9e-09
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 55 9e-09
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 53 5e-08
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 53 5e-08
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 53 6e-08
gi|4505255 musashi 1 [Homo sapiens] 51 2e-07
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 51 2e-07
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 51 2e-07
gi|20373175 musashi 2 isoform a [Homo sapiens] 49 1e-06
gi|25121993 musashi 2 isoform b [Homo sapiens] 49 1e-06
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 49 1e-06
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 48 1e-06
gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens] 48 2e-06
gi|169168866 PREDICTED: similar to hCG1642312 [Homo sapiens] 48 2e-06
gi|169169315 PREDICTED: similar to hCG1642312 [Homo sapiens] 48 2e-06
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 48 2e-06
gi|34577105 RNA-binding region containing protein 1 isoform b [H... 47 3e-06
gi|34577107 RNA-binding region containing protein 1 isoform a [H... 47 3e-06
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 47 4e-06
gi|6678271 TAR DNA binding protein [Homo sapiens] 46 6e-06
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 44 3e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 43 5e-05
gi|122937418 similar to poly(A)binding protein nuclear-like 1 [H... 43 5e-05
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 42 8e-05
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 42 8e-05
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 42 8e-05
gi|55956788 nucleolin [Homo sapiens] 42 8e-05
>gi|13654278 SRA stem-loop-interacting RNA-binding protein [Homo
sapiens]
Length = 109
Score = 224 bits (570), Expect = 2e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR 60
MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
Sbjct: 1 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR 60
Query: 61 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
Sbjct: 61 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 55.5 bits (132), Expect = 9e-09
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W LK++F++FG V C L D TG RG G+V F E + + Q+
Sbjct: 100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 159
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
H ++G KV + +R K +T + KK F
Sbjct: 160 HKLNG-KV-IDPKRAKAMKTKEPVKKIF 185
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +++E+F FG V LP D +T RG ++ F EE ++ ++++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
Query: 82 HIIDGVKVQVHTRRPK 97
H + K ++ K
Sbjct: 245 HNVGLSKCEIKVAMSK 260
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 55.5 bits (132), Expect = 9e-09
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W LK++F++FG V C L D TG RG G+V F E + + Q+
Sbjct: 100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 159
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
H ++G KV + +R K +T + KK F
Sbjct: 160 HKLNG-KV-IDPKRAKAMKTKEPVKKIF 185
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +++E+F FG V LP D +T RG ++ F EE ++ ++++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
Query: 82 HIIDGVKVQVHTRRPK 97
H + K ++ K
Sbjct: 245 HNVGLSKCEIKVAMSK 260
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 55.5 bits (132), Expect = 9e-09
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W LK++F++FG V C L D TG RG G+V F E + + Q+
Sbjct: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
H ++G KV + +R K +T + KK F
Sbjct: 141 HKLNG-KV-IDPKRAKAMKTKEPVKKIF 166
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +++E+F FG V LP D +T RG ++ F EE ++ ++++
Sbjct: 166 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 225
Query: 82 HIIDGVKVQVHTRRPK 97
H + K ++ K
Sbjct: 226 HNVGLSKCEIKVAMSK 241
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 55.5 bits (132), Expect = 9e-09
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W LK++F++FG V C L D TG RG G+V F E + + Q+
Sbjct: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
H ++G KV + +R K +T + KK F
Sbjct: 141 HKLNG-KV-IDPKRAKAMKTKEPVKKIF 166
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +++E+F FG V LP D +T RG ++ F EE ++ ++++
Sbjct: 166 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 225
Query: 82 HIIDGVKVQVHTRRPK 97
H + K ++ K
Sbjct: 226 HNVGLSKCEIKVAMSK 241
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 53.1 bits (126), Expect = 5e-08
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 2 AASAARGAAALRRSINQPVA-----------------FVRRIPWTAASSQLKEHFAQFGH 44
AA+ A GA A S NQ A FV + W + LK++F +FG
Sbjct: 36 AAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE 95
Query: 45 VRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDD 104
V C + D TG RG G++ F + L Q+ H +DG +V + + D
Sbjct: 96 VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPKKAMAMKKDP 152
Query: 105 EKKDF 109
KK F
Sbjct: 153 VKKIF 157
Score = 48.9 bits (115), Expect = 9e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + A +++E+F +FG + LP D + RG ++ F EE ++ L+++
Sbjct: 157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKF 216
Query: 82 HIIDGVKVQVHTRRPK 97
H + G K ++ +PK
Sbjct: 217 HTVSGSKCEIKVAQPK 232
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 53.1 bits (126), Expect = 5e-08
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 2 AASAARGAAALRRSINQPVA-----------------FVRRIPWTAASSQLKEHFAQFGH 44
AA+ A GA A S NQ A FV + W + LK++F +FG
Sbjct: 36 AAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE 95
Query: 45 VRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDD 104
V C + D TG RG G++ F + L Q+ H +DG +V + + D
Sbjct: 96 VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPKKAMAMKKDP 152
Query: 105 EKKDF 109
KK F
Sbjct: 153 VKKIF 157
Score = 48.9 bits (115), Expect = 9e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + A +++E+F +FG + LP D + RG ++ F EE ++ L+++
Sbjct: 157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKF 216
Query: 82 HIIDGVKVQVHTRRPK 97
H + G K ++ +PK
Sbjct: 217 HTVSGSKCEIKVAQPK 232
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 52.8 bits (125), Expect = 6e-08
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV R+P +A S QL+E F+Q G V++C + +K + RG G+V FS E ++ AL +E
Sbjct: 7 FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL-KEI 65
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKD 108
+G K+ V + KL + ++ K+
Sbjct: 66 TTFEGCKINVTVAKKKLRNKTKEKGKN 92
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNAL---Q 78
F+R + + + +L E QFG ++ + +T +G + QF ++E + L
Sbjct: 338 FIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAAS 397
Query: 79 QENHIIDGVKVQVHTRRPKLPQTSDDEKK 107
EN G+K+ + L T D+ K
Sbjct: 398 PENE-AGGLKLDGRQLKVDLAVTRDEAAK 425
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W L+E+F QFG V+ C++ D T RG G+V F + G+ L Q
Sbjct: 23 FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 82
Query: 82 HIIDGVKVQVHTRRPKLPQ 100
H +D + P+ Q
Sbjct: 83 HELDSKTIDPKVAFPRRAQ 101
Score = 48.5 bits (114), Expect = 1e-06
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +K++F QFG V +L FDK T HRG G+V F SE+ + +
Sbjct: 112 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF 171
Query: 82 HIIDGVKVQVHTRRPK 97
H I+ V+ +PK
Sbjct: 172 HEINNKMVECKKAQPK 187
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV IP ++L+E+F +FG V ++ +D E RG G++ F E+ + A+
Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 175
Query: 82 HIIDGVKVQVHTRRPK 97
H I G KV+V P+
Sbjct: 176 HDIMGKKVEVKRAEPR 191
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + W+ L+ +F+Q+G V C++ DK T RG G+V+F + L
Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKD 108
H +DG + P+ Q K+
Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKE 99
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV IP ++L+E+F +FG V ++ +D E RG G++ F E+ + A+
Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 175
Query: 82 HIIDGVKVQVHTRRPK 97
H I G KV+V P+
Sbjct: 176 HDIMGKKVEVKRAEPR 191
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + W+ L+ +F+Q+G V C++ DK T RG G+V+F + L
Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKD 108
H +DG + P+ Q K+
Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKE 99
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 48.5 bits (114), Expect = 1e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +K++F QFG V +L FDK T HRG G+V F +E+ + +
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF 172
Query: 82 HIIDGVKVQVHTRRPK 97
H I+ V+ +PK
Sbjct: 173 HEINNKMVECKKAQPK 188
Score = 47.8 bits (112), Expect = 2e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W + L+++F++FG +R C++ D T RG G+V F+ + L Q +
Sbjct: 24 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH 83
Query: 82 HIIDGVKVQVHTRRPKLPQ 100
H +D + P+ Q
Sbjct: 84 HELDSKTIDPKVAFPRRAQ 102
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 48.5 bits (114), Expect = 1e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + +K++F QFG V +L FDK T HRG G+V F +E+ + +
Sbjct: 109 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF 168
Query: 82 HIIDGVKVQVHTRRPK 97
H I+ V+ +PK
Sbjct: 169 HEINNKMVECKKAQPK 184
Score = 47.8 bits (112), Expect = 2e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W + L+++F++FG +R C++ D T RG G+V F+ + L Q +
Sbjct: 20 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH 79
Query: 82 HIIDGVKVQVHTRRPKLPQ 100
H +D + P+ Q
Sbjct: 80 HELDSKTIDPKVAFPRRAQ 98
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 48.5 bits (114), Expect = 1e-06
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV + A L EHF+QFG V + + DK++G RG G+V F + + A +
Sbjct: 101 FVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKF 160
Query: 82 HIIDGVKVQVHTRRPK 97
H I G +V+V PK
Sbjct: 161 HPIQGHRVEVKKAVPK 176
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + + S L+ HF FG + C++ + +T R G+V +S+ E A+
Sbjct: 10 FIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASP 69
Query: 82 HIIDGVKVQV 91
H +DG V++
Sbjct: 70 HAVDGNTVEL 79
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 48.1 bits (113), Expect = 1e-06
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 9 AAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFS 68
A AL+ FV + + Q+KE+F FG + LP D +T RG ++ ++
Sbjct: 223 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT 282
Query: 69 SEEGLRNALQQENHIIDGVKVQVHTRRPK 97
EE ++ L+ H I K ++ +PK
Sbjct: 283 DEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 46.2 bits (108), Expect = 6e-06
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
F+ + W + L E+ ++FG V C + D TG RG G+V F + L+ +
Sbjct: 151 FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKE 210
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEKKDF 109
H +DG + +R K + + KK F
Sbjct: 211 HKLDGKLID--PKRAKALKGKEPPKKVF 236
>gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 2e-06
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 9 AAALRRSINQPVAF-VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQF 67
A ++R++ + A V +PW LKE+F+ FG + + D TG+ +G G+V F
Sbjct: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
Query: 68 -SSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEK 106
E ++ I DGV VQ T + L +T +K
Sbjct: 434 IKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKK 473
>gi|169168866 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 2e-06
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 9 AAALRRSINQPVAF-VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQF 67
A ++R++ + A V +PW LKE+F+ FG + + D TG+ +G G+V F
Sbjct: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
Query: 68 -SSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEK 106
E ++ I DGV VQ T + L +T +K
Sbjct: 434 IKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKK 473
>gi|169169315 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 2e-06
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 9 AAALRRSINQPVAF-VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQF 67
A ++R++ + A V +PW LKE+F+ FG + + D TG+ +G G+V F
Sbjct: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
Query: 68 -SSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEK 106
E ++ I DGV VQ T + L +T +K
Sbjct: 434 IKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKK 473
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo
sapiens]
Length = 236
Score = 47.8 bits (112), Expect = 2e-06
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV +P+ + L+++F FG + ++ D++TG RG G+V + A + N
Sbjct: 14 FVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 73
Query: 82 HIIDGVKVQVH 92
IIDG K V+
Sbjct: 74 PIIDGRKANVN 84
>gi|34577105 RNA-binding region containing protein 1 isoform b [Homo
sapiens]
Length = 121
Score = 47.4 bits (111), Expect = 3e-06
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV +P+ + L+++F FG + ++ D++TG RG G+V + A + N
Sbjct: 37 FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 96
Query: 82 HIIDGVKVQVH 92
IIDG K V+
Sbjct: 97 PIIDGRKANVN 107
>gi|34577107 RNA-binding region containing protein 1 isoform a [Homo
sapiens]
Length = 239
Score = 47.4 bits (111), Expect = 3e-06
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV +P+ + L+++F FG + ++ D++TG RG G+V + A + N
Sbjct: 37 FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 96
Query: 82 HIIDGVKVQVH 92
IIDG K V+
Sbjct: 97 PIIDGRKANVN 107
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 46.6 bits (109), Expect = 4e-06
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
+V + + A + +L+ HF G V R + DK +G +G +++FS +E +R +L +
Sbjct: 175 YVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDE 234
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEK 106
+ G +++V +R P S ++
Sbjct: 235 SLFRGRQIKVIPKRTNRPGISTTDR 259
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 46.2 bits (108), Expect = 6e-06
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 1 MAASAARGAAALRRSINQPV-AFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFH 59
M + A A ++R++ + V +PW LKE+F+ FG V + D +TG
Sbjct: 85 MDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
Query: 60 RGLGWVQFSSEEGLRNALQQENHIIDG 86
+G G+V+F+ E + Q H+IDG
Sbjct: 145 KGFGFVRFTEYETQVKVMSQ-RHMIDG 170
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
FV R +L+E F+Q+G V +P R +V F+ ++ + +L E+
Sbjct: 194 FVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQ-IAQSLCGED 247
Query: 82 HIIDGVKVQVHTRRPK 97
II G+ V + PK
Sbjct: 248 LIIKGISVHISNAEPK 263
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 43.9 bits (102), Expect = 3e-05
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 11 ALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSE 70
A+ RS+ FV IP+ A QLK+ F++ G V L +D+ETG +G G+ ++ +
Sbjct: 10 AMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67
Query: 71 EGLRNALQQEN 81
E +A++ N
Sbjct: 68 ETALSAMRNLN 78
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 11 ALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSE 70
A+ RS+ FV IP+ A QLK+ F++ G V L +D+ETG +G G+ ++ +
Sbjct: 10 AVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67
Query: 71 EGLRNALQQEN 81
E +A++ N
Sbjct: 68 ETALSAMRNLN 78
>gi|122937418 similar to poly(A)binding protein nuclear-like 1 [Homo
sapiens]
Length = 289
Score = 43.1 bits (100), Expect = 5e-05
Identities = 18/85 (21%), Positives = 47/85 (55%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
+V + + ++ +L+ HF++ G V R + DK +G +G +++F+++ ++ A++ +
Sbjct: 150 YVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQ 209
Query: 82 HIIDGVKVQVHTRRPKLPQTSDDEK 106
+ G ++V +R P S ++
Sbjct: 210 SLFRGRVIKVLPKRTNFPGISSTDR 234
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 42.4 bits (98), Expect = 8e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
A + AR R+ + VR IP+ A S +++E F+ FG ++ LP TG HR
Sbjct: 816 AVTLARKKQVPRKQTTSKI-LVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHR 874
Query: 61 GLGWVQFSSEEGLR---NALQQENHI 83
G G+V F +++ + NAL H+
Sbjct: 875 GFGFVDFLTKQDAKRAFNALCHSTHL 900
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETG---FHRGLGWVQFSSEEGLRNALQ 78
F++ + + +LKE F++ G V+ C + K G G+V++ E + AL+
Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792
Query: 79 Q-ENHIIDGVKVQVH-TRRPKLPQTSDDEKK 107
Q + H++DG K++V + R P + KK
Sbjct: 793 QLQGHVVDGHKLEVRISERATKPAVTLARKK 823
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 23 VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN- 81
V+ +P + ++ FA FG + C L F K+ G R G++ F SEE + A + N
Sbjct: 6 VKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHFNK 64
Query: 82 HIIDGVKVQV 91
ID ++ V
Sbjct: 65 SFIDTSRITV 74
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEE 71
FVR +P+T+ L++ F+++G + P D T +G ++ F E
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 10 AALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP 51
AA RS + V V+ +P ++QL+E F FG + R +LP
Sbjct: 580 AAAERS--KTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLP 619
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 42.4 bits (98), Expect = 8e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
A + AR R+ + VR IP+ A S +++E F+ FG ++ LP TG HR
Sbjct: 816 AVTLARKKQVPRKQTTSKI-LVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHR 874
Query: 61 GLGWVQFSSEEGLR---NALQQENHI 83
G G+V F +++ + NAL H+
Sbjct: 875 GFGFVDFLTKQDAKRAFNALCHSTHL 900
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETG---FHRGLGWVQFSSEEGLRNALQ 78
F++ + + +LKE F++ G V+ C + K G G+V++ E + AL+
Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792
Query: 79 Q-ENHIIDGVKVQVH-TRRPKLPQTSDDEKK 107
Q + H++DG K++V + R P + KK
Sbjct: 793 QLQGHVVDGHKLEVRISERATKPAVTLARKK 823
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 23 VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN- 81
V+ +P + ++ FA FG + C L F K+ G R G++ F SEE + A + N
Sbjct: 6 VKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHFNK 64
Query: 82 HIIDGVKVQV 91
ID ++ V
Sbjct: 65 SFIDTSRITV 74
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEE 71
FVR +P+T+ L++ F+++G + P D T +G ++ F E
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 10 AALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP 51
AA RS + V V+ +P ++QL+E F FG + R +LP
Sbjct: 580 AAAERS--KTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLP 619
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 42.4 bits (98), Expect = 8e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
A + AR R+ + VR IP+ A S +++E F+ FG ++ LP TG HR
Sbjct: 816 AVTLARKKQVPRKQTTSKI-LVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHR 874
Query: 61 GLGWVQFSSEEGLR---NALQQENHI 83
G G+V F +++ + NAL H+
Sbjct: 875 GFGFVDFLTKQDAKRAFNALCHSTHL 900
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETG---FHRGLGWVQFSSEEGLRNALQ 78
F++ + + +LKE F++ G V+ C + K G G+V++ E + AL+
Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792
Query: 79 Q-ENHIIDGVKVQVH-TRRPKLPQTSDDEKK 107
Q + H++DG K++V + R P + KK
Sbjct: 793 QLQGHVVDGHKLEVRISERATKPAVTLARKK 823
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 23 VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN- 81
V+ +P + ++ FA FG + C L F K+ G R G++ F SEE + A + N
Sbjct: 6 VKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHFNK 64
Query: 82 HIIDGVKVQV 91
ID ++ V
Sbjct: 65 SFIDTSRITV 74
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEE 71
FVR +P+T+ L++ F+++G + P D T +G ++ F E
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 10 AALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP 51
AA RS + V V+ +P ++QL+E F FG + R +LP
Sbjct: 580 AAAERS--KTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLP 619
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 42.4 bits (98), Expect = 8e-05
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 14 RSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGL 73
RS FV+ + LKE F G VR I+ D+ETG +G G+V F+SEE
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVT-DRETGSSKGFGFVDFNSEEDA 623
Query: 74 RNALQ-QENHIIDGVKVQVHTRRPK 97
+ A + E+ IDG KV + +PK
Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAKPK 648
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,959,474
Number of Sequences: 37866
Number of extensions: 149066
Number of successful extensions: 579
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 248
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.