Guide to the Human Genome
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Name: CHIC2 Sequence: fasta or formatted (165aa) NCBI GI: 6912276
Description:

cysteine-rich hydrophobic domain 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4          4           1
 C cysteine            6.7         11           4
 D aspartate           3.0          5           1
 E glutamate          11.5         19           4
 F phenylalanine       4.2          7           1
 G glycine             3.6          6           1
 H histidine           1.8          3           1
 I isoleucine          4.2          7           1
 K lysine              7.3         12           2
 L leucine            12.1         20           2
 M methionine          2.4          4           2
 N asparagine          5.5          9           2
 P proline             5.5          9           1
 Q glutamine           0.6          1           1
 R arginine            6.7         11           2
 S serine              7.3         12           2
 T threonine           3.6          6           1
 V valine              6.7         11           3
 W tryptophan          2.4          4           1
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cysteine-rich hydrophobic domain 2 
CHIC1                 0.798   cysteine-rich hydrophobic domain 1 
DNAJC5G               0.028   DnaJ (Hsp40) homolog, subfamily C, member 5 gamma [H...
GOLGA7                0.025   golgi autoantigen, golgin subfamily a, 7 
GOLGA7                0.025   golgi autoantigen, golgin subfamily a, 7 
LOC100131830          0.021   PREDICTED: hypothetical protein 
MSH6                  0.018   mutS homolog 6 
TMEM63B               0.018   transmembrane protein 63B 
DNAJC2                0.018   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ...
DNAJC2                0.018   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform...
NUFIP2                0.018   nuclear fragile X mental retardation protein interac...
TNNT2                 0.012   troponin T type 2, cardiac isoform 3 
TNNT2                 0.012   troponin T type 2, cardiac isoform 2 
LOC100131830          0.012   PREDICTED: hypothetical protein 
LOC100131830          0.012   PREDICTED: hypothetical protein 
GON4L                 0.012   gon-4-like isoform b 
C11orf16              0.012   hypothetical protein LOC56673 
TMEM63A               0.012   transmembrane protein 63A 
KRI1                  0.009   KRI1 homolog 
TNNT2                 0.009   troponin T type 2, cardiac isoform 1 
GOLGA7B               0.009   golgi autoantigen, golgin subfamily a, 7B 
DNAJC5B               0.009   DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho...
CPLX2                 0.006   complexin 2 
CPLX2                 0.006   complexin 2 
IRX6                  0.006   iroquois homeobox protein 6 
RGS17                 0.006   regulator of G-protein signalling 17 
TAS1R1                0.006   sweet taste receptor T1r isoform a 
LRSAM1                0.006   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.006   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.006   leucine rich repeat and sterile alpha motif containi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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