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Search of human proteins with 6912238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens] 424 e-119
gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens] 314 3e-86
gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens] 136 1e-32
gi|126352608 elastin isoform e precursor [Homo sapiens] 33 0.18
gi|126352446 elastin isoform d precursor [Homo sapiens] 33 0.18
gi|126352322 elastin isoform c precursor [Homo sapiens] 33 0.18
gi|126352700 elastin isoform b precursor [Homo sapiens] 33 0.18
gi|126352440 elastin isoform a precursor [Homo sapiens] 33 0.18
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 32 0.31
gi|4557529 post-synaptic density protein 95 isoform 1 [Homo sapi... 32 0.40
gi|192447426 post-synaptic density protein 95 isoform 2 [Homo sa... 32 0.40
gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo ... 30 1.2
gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo ... 30 1.2
gi|27544941 myosin IF [Homo sapiens] 30 1.5
gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1... 29 2.6
gi|38708309 PPPDE peptidase domain containing 1 [Homo sapiens] 29 3.4
gi|7706435 headcase [Homo sapiens] 28 4.5
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 28 7.6
gi|150170699 kinesin family member 26A [Homo sapiens] 28 7.6
gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens] 27 10.0
gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo ... 27 10.0
gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo ... 27 10.0
gi|14589889 cadherin 2, type 1 preproprotein [Homo sapiens] 27 10.0
gi|4503011 carboxypeptidase N, polypeptide 1 precursor [Homo sap... 27 10.0
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 27 10.0
gi|7706607 LEM domain containing 3 [Homo sapiens] 27 10.0
>gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens]
Length = 214
Score = 424 bits (1090), Expect = e-119
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD 60
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD
Sbjct: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD 60
Query: 61 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV 120
AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV
Sbjct: 61 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV 120
Query: 121 QVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKR 180
QVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKR
Sbjct: 121 QVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKR 180
Query: 181 FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL
Sbjct: 181 FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
>gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens]
Length = 170
Score = 314 bits (805), Expect = 3e-86
Identities = 170/214 (79%), Positives = 170/214 (79%), Gaps = 44/214 (20%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD 60
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD
Sbjct: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD 60
Query: 61 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV 120
AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSK
Sbjct: 61 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSK------------------ 102
Query: 121 QVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKR 180
VRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKR
Sbjct: 103 --------------------------VRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKR 136
Query: 181 FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL
Sbjct: 137 FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 170
>gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens]
Length = 125
Score = 136 bits (343), Expect = 1e-32
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 146 KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS 205
KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS
Sbjct: 57 KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS 116
Query: 206 LAPNIISQL 214
LAPNIISQL
Sbjct: 117 LAPNIISQL 125
Score = 115 bits (289), Expect = 2e-26
Identities = 58/58 (100%), Positives = 58/58 (100%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV 58
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV
Sbjct: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV 58
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 33.1 bits (74), Expect = 0.18
Identities = 45/148 (30%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSE--GEWASG------------------ 41
G GV AGY G G Q+AAAAA + + G A+G
Sbjct: 231 GPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIP 290
Query: 42 ------GVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAEL-FKGKKGVLFGVPG 94
GV + + AAAA A K A + G PG + + G GV GVPG
Sbjct: 291 GIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGV--GVPG 348
Query: 95 AFTP-----GCSKTHLPGFVEQAEALKA 117
A P G +PG V A KA
Sbjct: 349 AGIPVVPGAGIPGAAVPGVVSPEAAAKA 376
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 33.1 bits (74), Expect = 0.18
Identities = 45/148 (30%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSE--GEWASG------------------ 41
G GV AGY G G Q+AAAAA + + G A+G
Sbjct: 236 GPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIP 295
Query: 42 ------GVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAEL-FKGKKGVLFGVPG 94
GV + + AAAA A K A + G PG + + G GV GVPG
Sbjct: 296 GIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGV--GVPG 353
Query: 95 AFTP-----GCSKTHLPGFVEQAEALKA 117
A P G +PG V A KA
Sbjct: 354 AGIPVVPGAGIPGAAVPGVVSPEAAAKA 381
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 33.1 bits (74), Expect = 0.18
Identities = 45/148 (30%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSE--GEWASG------------------ 41
G GV AGY G G Q+AAAAA + + G A+G
Sbjct: 236 GPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIP 295
Query: 42 ------GVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAEL-FKGKKGVLFGVPG 94
GV + + AAAA A K A + G PG + + G GV GVPG
Sbjct: 296 GIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGV--GVPG 353
Query: 95 AFTP-----GCSKTHLPGFVEQAEALKA 117
A P G +PG V A KA
Sbjct: 354 AGIPVVPGAGIPGAAVPGVVSPEAAAKA 381
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 33.1 bits (74), Expect = 0.18
Identities = 45/148 (30%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSE--GEWASG------------------ 41
G GV AGY G G Q+AAAAA + + G A+G
Sbjct: 221 GPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIP 280
Query: 42 ------GVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAEL-FKGKKGVLFGVPG 94
GV + + AAAA A K A + G PG + + G GV GVPG
Sbjct: 281 GIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGV--GVPG 338
Query: 95 AFTP-----GCSKTHLPGFVEQAEALKA 117
A P G +PG V A KA
Sbjct: 339 AGIPVVPGAGIPGAAVPGVVSPEAAAKA 366
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 33.1 bits (74), Expect = 0.18
Identities = 45/148 (30%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSE--GEWASG------------------ 41
G GV AGY G G Q+AAAAA + + G A+G
Sbjct: 231 GPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIP 290
Query: 42 ------GVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAEL-FKGKKGVLFGVPG 94
GV + + AAAA A K A + G PG + + G GV GVPG
Sbjct: 291 GIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGV--GVPG 348
Query: 95 AFTP-----GCSKTHLPGFVEQAEALKA 117
A P G +PG V A KA
Sbjct: 349 AGIPVVPGAGIPGAAVPGVVSPEAAAKA 376
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1
[Homo sapiens]
Length = 2564
Score = 32.3 bits (72), Expect = 0.31
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 17 LVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKV 76
L+ AGG AA AA +GG S A +A K+ +GE G +
Sbjct: 666 LLEAAGGGGAAGAAGAAG----TAGGAHDLSSTARLLAQHKI---------LQGELGGRR 712
Query: 77 NLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK 118
L + L GA PG HL G E+A + + +
Sbjct: 713 ALLQQALRCGEELVAAGGAVGPGADTVHLVGLAERAASARRR 754
>gi|4557529 post-synaptic density protein 95 isoform 1 [Homo
sapiens]
Length = 767
Score = 32.0 bits (71), Expect = 0.40
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 43 VRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSK 102
VR + +AA A + G + + P KV +L KG KG+ F + G G
Sbjct: 168 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG----GVGN 223
Query: 103 THLPG 107
H+PG
Sbjct: 224 QHIPG 228
>gi|192447426 post-synaptic density protein 95 isoform 2 [Homo
sapiens]
Length = 721
Score = 32.0 bits (71), Expect = 0.40
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 43 VRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSK 102
VR + +AA A + G + + P KV +L KG KG+ F + G G
Sbjct: 122 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG----GVGN 177
Query: 103 THLPG 107
H+PG
Sbjct: 178 QHIPG 182
>gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMA 54
G + C R AG + GG A+ A R C E E +G V++F R A A
Sbjct: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPA 68
>gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMA 54
G + C R AG + GG A+ A R C E E +G V++F R A A
Sbjct: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPA 68
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 30.0 bits (66), Expect = 1.5
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 RCSEGEWASGGVRS--FSRAAAAMAPIKVGDAIPAVEVFEGEP-GNKVNLAELFKGK 85
R + W GG RS FSR +A +KVG V V +G P +K + KGK
Sbjct: 878 RVKKEGWGGGGTRSVTFSRGFGDLAVLKVGGRTLTVSVGDGLPKSSKPTRKGMAKGK 934
>gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1,
membrane-bound form [Homo sapiens]
Length = 398
Score = 29.3 bits (64), Expect = 2.6
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 22 GGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGN 74
GG ++AAA + S GE +GG R A+ P GD+ P V+ G N
Sbjct: 62 GGSNSAAAIGQ-SSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASN 113
>gi|38708309 PPPDE peptidase domain containing 1 [Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 3.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 59 GDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFG 91
G P +FE PGN L E FK K+ V+ G
Sbjct: 44 GHPYPFSGIFEISPGNASELGETFKFKEAVVLG 76
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 28.5 bits (62), Expect = 4.5
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 3 LAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGDA 61
LA A +AG L AG +AAA A A G + AAAA GDA
Sbjct: 30 LAAAGAAGAAAGGALAAAAGCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAGDA 88
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 27.7 bits (60), Expect = 7.6
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 32 RCSEGEWASGGVRSFSRAAAAMAPIKV-GDAIPAV-EVFEGEPGNKVNLAELFKGKKGVL 89
R EGE SG +R R + + + D+ P V +VF G NL + +G
Sbjct: 472 RSGEGE-VSGLMRKVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLIVIERGAAAAA 530
Query: 90 FGVPG---AFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK 146
G PG A TPG V++ E A G A V AEG
Sbjct: 531 TGQPGTAPAGTPGAPPLAGMAIVKEEETEAAIGAPPTATEGPETKPVLMALAEGPGAEGP 590
Query: 147 VRLLADPTGA 156
LA P+G+
Sbjct: 591 --RLASPSGS 598
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 27.7 bits (60), Expect = 7.6
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 20 GAGG--QSAAAAARRCSEGEWASGGVRSF----SRAAAAMAPIKVGDAIPAVEVFEGEPG 73
G GG + A++C EG W+ V SF A AA+A + V D + G G
Sbjct: 211 GLGGALSTVTIQAQQCLEGMWSVSRVNSFLPPACLAEAAVAAVAVADTVRECPPVAGPDG 270
>gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]
Length = 1029
Score = 27.3 bits (59), Expect = 10.0
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 133 VTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKA 192
+TG + R H +G V + + T +G D++ + + IF + ++ S+ + +GIV
Sbjct: 231 LTGGFVRLHP-DGTVDAIGEKTDKYGV-FDVIFNKRNICIFQSHEMRHLSLALDNGIVTG 288
Query: 193 LNVEPDGTGLTCSLAPN 209
+ T L PN
Sbjct: 289 MVSGEATTELRVLYQPN 305
>gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo
sapiens]
Length = 1029
Score = 27.3 bits (59), Expect = 10.0
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 133 VTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKA 192
+TG + R H +G V + + T +G D++ + + IF + ++ S+ + +GIV
Sbjct: 231 LTGGFVRLHP-DGTVDAIGEKTDKYGV-FDVIFNKRNICIFQSHEMRHLSLALDNGIVTG 288
Query: 193 LNVEPDGTGLTCSLAPN 209
+ T L PN
Sbjct: 289 MVSGEATTELRVLYQPN 305
>gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo
sapiens]
Length = 1029
Score = 27.3 bits (59), Expect = 10.0
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 133 VTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKA 192
+TG + R H +G V + + T +G D++ + + IF + ++ S+ + +GIV
Sbjct: 231 LTGGFVRLHP-DGTVDAIGEKTDKYGV-FDVIFNKRNICIFQSHEMRHLSLALDNGIVTG 288
Query: 193 LNVEPDGTGLTCSLAPN 209
+ T L PN
Sbjct: 289 MVSGEATTELRVLYQPN 305
>gi|14589889 cadherin 2, type 1 preproprotein [Homo sapiens]
Length = 906
Score = 27.3 bits (59), Expect = 10.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 122 VVACLSVNDAFV--TGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSI 172
+VA L+V D T W ++ G DPTG F +TD +D LV++
Sbjct: 399 IVANLTVTDKDQPHTPAWNAVYRISG-----GDPTGRFAIQTDPNSNDGLVTV 446
>gi|4503011 carboxypeptidase N, polypeptide 1 precursor [Homo
sapiens]
Length = 458
Score = 27.3 bits (59), Expect = 10.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 156 AFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL-NVEPDGTGLTCSLAPN 209
A G+E L L + L F NR +R ++QD + L ++ PDG + + PN
Sbjct: 90 ALGRELMLQLSEFLCEEFRNRN-QRIVQLIQDTRIHILPSMNPDGYEVAAAQGPN 143
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 27.3 bits (59), Expect = 10.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEW 38
+GL G A S + GG GG +AAAAA C W
Sbjct: 68 LGLGGRSAASSSVSFSPGGGGGGAAAAAAA-ACRGMSW 104
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 27.3 bits (59), Expect = 10.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 5 GVCALRRSAGYILVGGAGGQSAAAAA 30
G+C + S L+GG GG SAA AA
Sbjct: 106 GLCRISASGPESLLGGPGGASAAPAA 131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,273,489
Number of Sequences: 37866
Number of extensions: 357880
Number of successful extensions: 1017
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 40
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.