Guide to the Human Genome
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Name: PRDX5 Sequence: fasta or formatted (125aa) NCBI GI: 32455262
Description:

peroxiredoxin 5 isoform c precursor

Referenced in:

Glutathione Pathways
Peroxisomes

Other entries for this name:
alt prot [170aa] peroxiredoxin 5 isoform b precursor
alt prot [214aa] peroxiredoxin 5 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         19           5
 C cysteine            2.4          3           1
 D aspartate           4.8          6           2
 E glutamate           3.2          4           1
 F phenylalanine       3.2          4           1
 G glycine            12.8         16           2
 H histidine           0.0          0           0
 I isoleucine          4.8          6           2
 K lysine              3.2          4           1
 L leucine            11.2         14           3
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             3.2          4           1
 Q glutamine           2.4          3           1
 R arginine            8.0         10           2
 S serine              8.8         11           1
 T threonine           3.2          4           1
 V valine              7.2          9           2
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxiredoxin 5 isoform c precursor 
PRDX5                 0.904   peroxiredoxin 5 isoform b precursor 
PRDX5                 0.507   peroxiredoxin 5 isoform a precursor 
DSC2                  0.032   desmocollin 2 isoform Dsc2b preproprotein 
DSC2                  0.032   desmocollin 2 isoform Dsc2a preproprotein 
LOC100286887          0.027   PREDICTED: hypothetical protein XP_002342631 
LOC100288609          0.027   PREDICTED: hypothetical protein XP_002344291 
EXOSC6                0.014   homolog of yeast mRNA transport regulator 3 
CPN1                  0.009   carboxypeptidase N, polypeptide 1 precursor 
C11orf61              0.009   hypothetical protein LOC79684 
LEMD3                 0.009   LEM domain containing 3 
FMN2                  0.009   formin 2 
ZNRF2                 0.009   zinc finger/RING finger 2 
SOX4                  0.009   SRY (sex determining region Y)-box 4 
LOC100288692          0.009   PREDICTED: hypothetical protein XP_002343084 
TAOK2                 0.009   TAO kinase 2 isoform 2 
FGFBP3                0.005   fibroblast growth factor binding protein 3 
LOC100293129          0.005   PREDICTED: hypothetical protein 
HECA                  0.005   headcase 
LILRA2                0.005   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.005   leukocyte immunoglobulin-like receptor, subfamily A (...
TCF20                 0.005   transcription factor 20 isoform 2 
TCF20                 0.005   transcription factor 20 isoform 1 
TRIO                  0.005   triple functional domain (PTPRF interacting) 
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
KDM2A                 0.005   F-box and leucine-rich repeat protein 11 
HABP2                 0.005   hyaluronan binding protein 2 preproprotein 
ELN                   0.005   elastin isoform e precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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