Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PPPDE1 Sequence: fasta or formatted (194aa) NCBI GI: 38708309
Description:

PPPDE peptidase domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         17           3
 C cysteine            2.1          4           1
 D aspartate           3.1          6           2
 E glutamate          10.3         20           2
 F phenylalanine       5.2         10           1
 G glycine             8.2         16           2
 H histidine           3.1          6           1
 I isoleucine          5.7         11           1
 K lysine              4.6          9           1
 L leucine             8.8         17           1
 M methionine          2.1          4           1
 N asparagine          4.1          8           1
 P proline             4.1          8           1
 Q glutamine           2.6          5           1
 R arginine            2.6          5           1
 S serine             10.3         20           2
 T threonine           3.1          6           1
 V valine              5.2         10           2
 W tryptophan          1.5          3           1
 Y tyrosine            4.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PPPDE peptidase domain containing 1 
LOC100293658          0.554   PREDICTED: similar to CGI-146 protein 
LOC100291497          0.543   PREDICTED: hypothetical protein XP_002348023 
LOC100288211          0.543   PREDICTED: hypothetical protein XP_002343701 
PPPDE2                0.086   PPPDE peptidase domain containing 2 
FUT4                  0.016   fucosyltransferase 4 
AP3B1                 0.016   adaptor-related protein complex 3, beta 1 subunit [H...
CCDC37                0.013   coiled-coil domain containing 37 
NCDN                  0.013   neurochondrin isoform 2 
NCDN                  0.013   neurochondrin isoform 1 
NCDN                  0.013   neurochondrin isoform 1 
LIMS2                 0.011   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.011   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.011   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.011   LIM and senescent cell antigen-like domains 2 isofor...
ROBO2                 0.011   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.011   roundabout, axon guidance receptor, homolog 2 isofor...
COPG2                 0.011   coatomer protein complex, subunit gamma 2 
PRDX5                 0.011   peroxiredoxin 5 isoform b precursor 
PRDX5                 0.011   peroxiredoxin 5 isoform a precursor 
NFKBIL2               0.011   NF-kappa-B inhibitor-like protein 2 
HECTD1                0.011   HECT domain containing 1 
MKI67                 0.008   antigen identified by monoclonal antibody Ki-67 iso...
MKI67                 0.008   antigen identified by monoclonal antibody Ki-67 iso...
ZNF295                0.008   zinc finger protein 295 isoform S 
ZNF295                0.008   zinc finger protein 295 isoform L 
ZNF295                0.008   zinc finger protein 295 isoform L 
TMX2                  0.008   thioredoxin domain containing 14 isoform 1 
NBPF6                 0.008   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF6                 0.008   neuroblastoma breakpoint family, member 6 isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press