Guide to the Human Genome
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Name: CANX Sequence: fasta or formatted (592aa) NCBI GI: 66933005
Description:

calnexin precursor

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [592aa] calnexin precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         34           2
 C cysteine            1.4          8           2
 D aspartate          11.3         67           3
 E glutamate          11.8         70           5
 F phenylalanine       3.4         20           2
 G glycine             5.7         34           2
 H histidine           1.5          9           2
 I isoleucine          5.2         31           2
 K lysine              9.3         55           2
 L leucine             6.4         38           2
 M methionine          2.0         12           1
 N asparagine          3.4         20           1
 P proline             8.8         52           2
 Q glutamine           2.0         12           1
 R arginine            3.4         20           2
 S serine              4.1         24           2
 T threonine           4.1         24           2
 V valine              5.2         31           2
 W tryptophan          2.7         16           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calnexin precursor 
CANX                  1.000   calnexin precursor 
CLGN                  0.572   calmegin 
CLGN                  0.572   calmegin 
CALR                  0.204   calreticulin precursor 
CALR3                 0.092   calreticulin 3 
MYT1                  0.022   myelin transcription factor 1 
FAM9A                 0.021   family with sequence similarity 9, member A 
RGAG4                 0.020   retrotransposon gag domain containing 4 
LOC100294088          0.020   PREDICTED: hypothetical protein, partial 
PELP1                 0.020   proline, glutamic acid and leucine rich protein 1 [...
MYT1L                 0.020   myelin transcription factor 1-like 
LOC728792             0.019   PREDICTED: hypothetical protein 
TTBK1                 0.019   tau tubulin kinase 1 
MYST4                 0.019   MYST histone acetyltransferase (monocytic leukemia)...
TRIM44                0.018   DIPB protein 
NEFM                  0.018   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.018   neurofilament, medium polypeptide 150kDa isoform 2 ...
EIF5B                 0.018   eukaryotic translation initiation factor 5B 
ACIN1                 0.018   apoptotic chromatin condensation inducer 1 
WDR87                 0.018   NYD-SP11 protein 
PTMA                  0.018   prothymosin, alpha isoform 1 
CDC2L2                0.017   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.017   cell division cycle 2-like 2 isoform 1 
RPGR                  0.017   retinitis pigmentosa GTPase regulator isoform C [Hom...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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