Guide to the Human Genome
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Name: CLGN Sequence: fasta or formatted (610aa) NCBI GI: 194578888
Description:

calmegin

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [610aa] calmegin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         34           3
 C cysteine            1.3          8           1
 D aspartate           9.5         58           3
 E glutamate          12.1         74           3
 F phenylalanine       4.1         25           2
 G glycine             5.2         32           2
 H histidine           2.0         12           2
 I isoleucine          6.7         41           2
 K lysine              9.7         59           3
 L leucine             6.7         41           2
 M methionine          2.0         12           1
 N asparagine          3.6         22           1
 P proline             7.4         45           2
 Q glutamine           2.5         15           1
 R arginine            2.6         16           2
 S serine              5.2         32           2
 T threonine           3.3         20           1
 V valine              5.1         31           2
 W tryptophan          3.0         18           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calmegin 
CLGN                  1.000   calmegin 
CANX                  0.559   calnexin precursor 
CANX                  0.559   calnexin precursor 
CALR                  0.185   calreticulin precursor 
CALR3                 0.098   calreticulin 3 
LOC100294088          0.021   PREDICTED: hypothetical protein, partial 
EHMT2                 0.020   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.020   euchromatic histone-lysine N-methyltransferase 2 is...
WDR87                 0.019   NYD-SP11 protein 
MYT1                  0.019   myelin transcription factor 1 
RPGR                  0.019   retinitis pigmentosa GTPase regulator isoform C [Hom...
CDC2L2                0.019   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.019   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
PELP1                 0.018   proline, glutamic acid and leucine rich protein 1 [...
TRIM44                0.018   DIPB protein 
NEFL                  0.018   neurofilament, light polypeptide 68kDa 
CDC2L1                0.018   cell division cycle 2-like 1 (PITSLRE proteins) isof...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent r...
YTHDC1                0.017   splicing factor YT521-B isoform 2 
YTHDC1                0.017   splicing factor YT521-B isoform 1 
CENPB                 0.016   centromere protein B 
LOC400352             0.016   PREDICTED: similar to Putative golgin subfamily A m...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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