Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SH3BGR Sequence: fasta or formatted (239aa) NCBI GI: 6677929
Description:

SH3-binding domain and glutamic acid-rich protein isoform a

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [128aa] SH3-binding domain and glutamic acid-rich protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         20           3
 C cysteine            2.1          5           1
 D aspartate           5.9         14           1
 E glutamate          18.4         44           5
 F phenylalanine       4.2         10           2
 G glycine             9.2         22           2
 H histidine           0.4          1           1
 I isoleucine          4.2         10           2
 K lysine              5.4         13           2
 L leucine             7.5         18           4
 M methionine          1.7          4           1
 N asparagine          3.8          9           1
 P proline             7.1         17           3
 Q glutamine           3.3          8           2
 R arginine            2.9          7           2
 S serine              5.9         14           2
 T threonine           3.3          8           1
 V valine              4.6         11           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3-binding domain and glutamic acid-rich protein iso... 
LOC100291671          0.868   PREDICTED: similar to SH3-binding domain and glutam...
SH3BGR                0.516   SH3-binding domain and glutamic acid-rich protein is...
SH3BGRL               0.280   SH3 domain binding glutamic acid-rich protein like [H...
SH3BGRL2              0.258   SH3 domain binding glutamic acid-rich protein like 2...
SH3BGRL3              0.078   SH3 domain binding glutamic acid-rich protein like 3...
RPGR                  0.069   retinitis pigmentosa GTPase regulator isoform C [Hom...
TRIM44                0.054   DIPB protein 
SLC24A1               0.048   solute carrier family 24 (sodium/potassium/calcium ex...
PELP1                 0.048   proline, glutamic acid and leucine rich protein 1 [...
MYST3                 0.048   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.048   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.048   MYST histone acetyltransferase (monocytic leukemia)...
MYT1                  0.046   myelin transcription factor 1 
CLSPN                 0.046   claspin 
CDC2L2                0.046   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.046   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.046   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.046   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.046   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.046   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.046   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYT1L                 0.043   myelin transcription factor 1-like 
YTHDC1                0.043   splicing factor YT521-B isoform 2 
YTHDC1                0.043   splicing factor YT521-B isoform 1 
CDC2L1                0.043   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYST4                 0.041   MYST histone acetyltransferase (monocytic leukemia)...
ZFHX3                 0.041   AT-binding transcription factor 1 
RP1L1                 0.041   retinitis pigmentosa 1-like 1 
PTMA                  0.041   prothymosin, alpha isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press