Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SH3BGRL Sequence: fasta or formatted (114aa) NCBI GI: 4506925
Description:

SH3 domain binding glutamic acid-rich protein like

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         14           2
 C cysteine            0.0          0           0
 D aspartate           3.5          4           1
 E glutamate          10.5         12           2
 F phenylalanine       5.3          6           2
 G glycine             6.1          7           1
 H histidine           0.0          0           0
 I isoleucine          5.3          6           1
 K lysine              7.0          8           3
 L leucine             4.4          5           1
 M methionine          1.8          2           1
 N asparagine          7.0          8           2
 P proline             6.1          7           2
 Q glutamine           6.1          7           2
 R arginine            5.3          6           1
 S serine              6.1          7           3
 T threonine           2.6          3           1
 V valine              5.3          6           1
 W tryptophan          0.9          1           1
 Y tyrosine            4.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3 domain binding glutamic acid-rich protein like [H... 
LOC100291671          0.629   PREDICTED: similar to SH3-binding domain and glutam...
SH3BGR                0.629   SH3-binding domain and glutamic acid-rich protein iso...
SH3BGRL2              0.541   SH3 domain binding glutamic acid-rich protein like 2...
SH3BGR                0.293   SH3-binding domain and glutamic acid-rich protein is...
SH3BGRL3              0.156   SH3 domain binding glutamic acid-rich protein like 3...
MLL4                  0.015   myeloid/lymphoid or mixed-lineage leukemia 4 
GLRX3                 0.010   glutaredoxin 3 
BMPR1B                0.010   bone morphogenetic protein receptor, type IB precurso...
HDAC4                 0.010   histone deacetylase 4 
NPAT                  0.010   nuclear protein,  ataxia-telangiectasia locus [Homo...
CCDC68                0.005   coiled-coil domain containing 68 
CCDC68                0.005   coiled-coil domain containing 68 
CLEC17A               0.005   C-type lectin domain family 17, member A 
C4orf8                0.005   hypothetical protein LOC8603 
TRIOBP                0.005   TRIO and F-actin binding protein isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press