Guide to the Human Genome
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Name: SH3BGR Sequence: fasta or formatted (128aa) NCBI GI: 48762712
Description:

SH3-binding domain and glutamic acid-rich protein isoform b

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [239aa] SH3-binding domain and glutamic acid-rich protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         10           1
 C cysteine            0.8          1           1
 D aspartate           4.7          6           1
 E glutamate          28.1         36           5
 F phenylalanine       3.9          5           2
 G glycine            10.9         14           2
 H histidine           0.0          0           0
 I isoleucine          3.9          5           2
 K lysine              5.5          7           2
 L leucine             3.1          4           1
 M methionine          1.6          2           1
 N asparagine          4.7          6           1
 P proline             7.8         10           3
 Q glutamine           3.9          5           1
 R arginine            0.8          1           1
 S serine              5.5          7           1
 T threonine           3.9          5           1
 V valine              1.6          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3-binding domain and glutamic acid-rich protein is... 
SH3BGR                1.000   SH3-binding domain and glutamic acid-rich protein iso...
LOC100291671          0.744   PREDICTED: similar to SH3-binding domain and glutam...
SH3BGRL               0.252   SH3 domain binding glutamic acid-rich protein like [H...
SH3BGRL2              0.231   SH3 domain binding glutamic acid-rich protein like 2...
RPGR                  0.130   retinitis pigmentosa GTPase regulator isoform C [Hom...
TRIM44                0.105   DIPB protein 
SLC24A1               0.092   solute carrier family 24 (sodium/potassium/calcium ex...
PELP1                 0.092   proline, glutamic acid and leucine rich protein 1 [...
MYST3                 0.092   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.092   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.092   MYST histone acetyltransferase (monocytic leukemia)...
MYT1                  0.088   myelin transcription factor 1 
CLSPN                 0.088   claspin 
MYT1L                 0.084   myelin transcription factor 1-like 
YTHDC1                0.084   splicing factor YT521-B isoform 2 
YTHDC1                0.084   splicing factor YT521-B isoform 1 
CDC2L2                0.084   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.084   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.084   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.084   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.084   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.084   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.084   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.084   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYST4                 0.080   MYST histone acetyltransferase (monocytic leukemia)...
ZFHX3                 0.080   AT-binding transcription factor 1 
RP1L1                 0.080   retinitis pigmentosa 1-like 1 
PTMA                  0.080   prothymosin, alpha isoform 2 
NEFL                  0.080   neurofilament, light polypeptide 68kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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