LITAF 34509

Name: LITAF	Sequence: fasta or formatted (161aa)		NCBI GI: 65787265
Description: lipopolysaccharide-induced TNF-alpha factor isoform 1		Referenced in: Lysosomes and Related Organelles
Other entries for this name: alt mRNA [161aa] lipopolysaccharide-induced TNF-alpha factor isoform 1 alt prot [152aa] lipopolysaccharide-induced TNF-alpha factor isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 12 2 C cysteine 6.8 11 2 D aspartate 3.1 5 1 E glutamate 1.2 2 2 F phenylalanine 1.9 3 1 G glycine 7.5 12 1 H histidine 1.2 2 1 I isoleucine 4.3 7 1 K lysine 1.9 3 1 L leucine 7.5 12 2 M methionine 3.1 5 1 N asparagine 5.0 8 3 P proline 14.9 24 2 Q glutamine 4.3 7 1 R arginine 1.9 3 1 S serine 7.5 12 2 T threonine 7.5 12 2 V valine 6.2 10 1 W tryptophan 0.6 1 1 Y tyrosine 6.2 10 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lipopolysaccharide-induced TNF-alpha factor isoform ... LITAF 1.000 lipopolysaccharide-induced TNF-alpha factor isoform... LITAF 0.758 lipopolysaccharide-induced TNF-alpha factor isoform... C16orf5 0.205 cell death inducing protein NACA 0.043 nascent polypeptide-associated complex alpha subuni... MED15 0.040 mediator complex subunit 15 isoform a MED15 0.040 mediator complex subunit 15 isoform b MUC7 0.040 mucin 7, secreted precursor MUC7 0.040 mucin 7, secreted precursor MUC7 0.040 mucin 7, secreted precursor TPRX1 0.037 tetra-peptide repeat homeobox ATN1 0.037 atrophin-1 ATN1 0.037 atrophin-1 C17orf96 0.031 hypothetical protein LOC100170841 BAT2 0.031 HLA-B associated transcript-2 EPN1 0.031 epsin 1 isoform c EPN1 0.031 epsin 1 isoform b EPN1 0.031 epsin 1 isoform a TSC22D2 0.031 TSC22 domain family, member 2 MAPK1IP1L 0.031 MAPK-interacting and spindle-stabilizing protein [Ho... MUC2 0.031 mucin 2 precursor DGKK 0.031 diacylglycerol kinase kappa C11orf9 0.031 hypothetical protein LOC745 isoform 1 C11orf9 0.031 hypothetical protein LOC745 isoform 2 CDKN1C 0.028 cyclin-dependent kinase inhibitor 1C isoform b [Hom... CDKN1C 0.028 cyclin-dependent kinase inhibitor 1C isoform b [Hom... CDKN1C 0.028 cyclin-dependent kinase inhibitor 1C isoform a ENAH 0.028 enabled homolog isoform a ENAH 0.028 enabled homolog isoform b LDB3 0.028 LIM domain binding 3 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.