Guide to the Human Genome
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Name: LITAF Sequence: fasta or formatted (161aa) NCBI GI: 210147505
Description:

lipopolysaccharide-induced TNF-alpha factor isoform 1

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [152aa] lipopolysaccharide-induced TNF-alpha factor isoform 2
alt mRNA [161aa] lipopolysaccharide-induced TNF-alpha factor isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         12           2
 C cysteine            6.8         11           2
 D aspartate           3.1          5           1
 E glutamate           1.2          2           2
 F phenylalanine       1.9          3           1
 G glycine             7.5         12           1
 H histidine           1.2          2           1
 I isoleucine          4.3          7           1
 K lysine              1.9          3           1
 L leucine             7.5         12           2
 M methionine          3.1          5           1
 N asparagine          5.0          8           3
 P proline            14.9         24           2
 Q glutamine           4.3          7           1
 R arginine            1.9          3           1
 S serine              7.5         12           2
 T threonine           7.5         12           2
 V valine              6.2         10           1
 W tryptophan          0.6          1           1
 Y tyrosine            6.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipopolysaccharide-induced TNF-alpha factor isoform... 
LITAF                 1.000   lipopolysaccharide-induced TNF-alpha factor isoform ...
LITAF                 0.758   lipopolysaccharide-induced TNF-alpha factor isoform...
C16orf5               0.205   cell death inducing protein 
NACA                  0.043   nascent polypeptide-associated complex alpha subuni...
MED15                 0.040   mediator complex subunit 15 isoform a 
MED15                 0.040   mediator complex subunit 15 isoform b 
MUC7                  0.040   mucin 7, secreted precursor 
MUC7                  0.040   mucin 7, secreted precursor 
MUC7                  0.040   mucin 7, secreted precursor 
TPRX1                 0.037   tetra-peptide repeat homeobox 
ATN1                  0.037   atrophin-1 
ATN1                  0.037   atrophin-1 
C17orf96              0.031   hypothetical protein LOC100170841 
BAT2                  0.031   HLA-B associated transcript-2 
EPN1                  0.031   epsin 1 isoform c 
EPN1                  0.031   epsin 1 isoform b 
EPN1                  0.031   epsin 1 isoform a 
TSC22D2               0.031   TSC22 domain family, member 2 
MAPK1IP1L             0.031   MAPK-interacting and spindle-stabilizing protein [Ho...
MUC2                  0.031   mucin 2 precursor 
DGKK                  0.031   diacylglycerol kinase kappa 
C11orf9               0.031   hypothetical protein LOC745 isoform 1 
C11orf9               0.031   hypothetical protein LOC745 isoform 2 
CDKN1C                0.028   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.028   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.028   cyclin-dependent kinase inhibitor 1C isoform a 
ENAH                  0.028   enabled homolog isoform a 
ENAH                  0.028   enabled homolog isoform b 
LDB3                  0.028   LIM domain binding 3 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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