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Search of human proteins with 65301117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
(273 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens] 544 e-155
gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens] 498 e-141
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 490 e-139
gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens] 239 1e-63
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 160 8e-40
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 160 8e-40
gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens] 106 2e-23
gi|239756347 PREDICTED: similar to taste receptor protein 1 [Hom... 40 0.002
gi|239750872 PREDICTED: similar to taste receptor protein 1 [Hom... 40 0.002
gi|239745235 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens] 40 0.002
gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens] 37 0.018
gi|83367077 mucin 16 [Homo sapiens] 35 0.054
gi|239757138 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.054
gi|89903008 neurofascin isoform 4 precursor [Homo sapiens] 33 0.20
gi|15042969 transmembrane protein 27 [Homo sapiens] 33 0.27
gi|4758508 transmembrane protease, serine 11D [Homo sapiens] 33 0.35
gi|237858679 neurofascin isoform 3 precursor [Homo sapiens] 32 0.78
gi|237858677 neurofascin isoform 2 precursor [Homo sapiens] 32 0.78
gi|190194423 SPARC-like 1 [Homo sapiens] 30 1.7
gi|190341024 SPARC-like 1 [Homo sapiens] 30 1.7
gi|23592222 olfactory receptor, family 5, subfamily P, member 2 ... 30 2.3
gi|38788260 bromodomain PHD finger transcription factor isoform ... 29 3.9
gi|38788274 bromodomain PHD finger transcription factor isoform ... 29 3.9
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 28 6.6
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 28 6.6
gi|166295173 kin of IRRE like [Homo sapiens] 28 6.6
gi|38201644 homeodomain-interacting protein kinase 1 isoform 4 [... 28 6.6
gi|38201642 homeodomain-interacting protein kinase 1 isoform 3 [... 28 6.6
gi|38201640 homeodomain-interacting protein kinase 1 isoform 1 [... 28 6.6
>gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
Length = 273
Score = 544 bits (1401), Expect = e-155
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNALSTGVSF 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNALSTGVSF
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNALSTGVSF 60
Query: 61 FFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQ 120
FFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQ
Sbjct: 61 FFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQ 120
Query: 121 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIA 180
LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIA
Sbjct: 121 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIA 180
Query: 181 LLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPS 240
LLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPS
Sbjct: 181 LLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPS 240
Query: 241 STDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
STDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 241 STDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
>gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens]
Length = 255
Score = 498 bits (1282), Expect = e-141
Identities = 255/273 (93%), Positives = 255/273 (93%), Gaps = 18/273 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNALSTGVSF 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA------- 53
Query: 61 FFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQ 120
FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQ
Sbjct: 54 -----------FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQ 102
Query: 121 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIA 180
LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIA
Sbjct: 103 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIA 162
Query: 181 LLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPS 240
LLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPS
Sbjct: 163 LLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPS 222
Query: 241 STDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
STDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 223 STDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 255
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 490 bits (1262), Expect = e-139
Identities = 255/282 (90%), Positives = 255/282 (90%), Gaps = 27/282 (9%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 52 NALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK 111
NA FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK
Sbjct: 61 NA------------------FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK 102
Query: 112 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG 171
FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG
Sbjct: 103 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG 162
Query: 172 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH 231
AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH
Sbjct: 163 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH 222
Query: 232 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 223 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 264
>gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
Length = 203
Score = 239 bits (611), Expect = 1e-63
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 158 SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPA 217
SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPA
Sbjct: 88 SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPA 147
Query: 218 RDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
RDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 148 RDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 203
Score = 106 bits (264), Expect = 2e-23
Identities = 53/54 (98%), Positives = 54/54 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAL 54
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA+
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAI 54
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 160 bits (406), Expect = 8e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 199 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 258
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 85 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 144
Query: 259 LSYTNPAVAATSANL 273
LSYTNPAVAATSANL
Sbjct: 145 LSYTNPAVAATSANL 159
Score = 132 bits (332), Expect = 3e-31
Identities = 76/103 (73%), Positives = 76/103 (73%), Gaps = 27/103 (26%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 52 NALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEM 94
NA FNSSLEDPSTDYYQELQRDISEM
Sbjct: 61 NA------------------FNSSLEDPSTDYYQELQRDISEM 85
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 160 bits (406), Expect = 8e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 199 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 258
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 76 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 135
Query: 259 LSYTNPAVAATSANL 273
LSYTNPAVAATSANL
Sbjct: 136 LSYTNPAVAATSANL 150
Score = 140 bits (352), Expect = 2e-33
Identities = 76/94 (80%), Positives = 76/94 (80%), Gaps = 18/94 (19%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNALSTGVSF 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA------- 53
Query: 61 FFLSFHISNLQFNSSLEDPSTDYYQELQRDISEM 94
FNSSLEDPSTDYYQELQRDISEM
Sbjct: 54 -----------FNSSLEDPSTDYYQELQRDISEM 76
>gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
Length = 158
Score = 106 bits (264), Expect = 2e-23
Identities = 53/54 (98%), Positives = 54/54 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAL 54
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA+
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAI 54
>gi|239756347 PREDICTED: similar to taste receptor protein 1 [Homo
sapiens]
Length = 562
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 63 LSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVVQ 120
++F I+N F+++L +P++ +Q L++ I +Y + GF G+ + FRPGSV V
Sbjct: 5 VTFTITNEAFSAALLNPASWKHQLLRKIIHHQLQPLYHEAFPGFQGIGVLVFRPGSVAVN 64
Query: 121 LTLAF 125
+L F
Sbjct: 65 ASLVF 69
>gi|239750872 PREDICTED: similar to taste receptor protein 1 [Homo
sapiens]
Length = 562
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 63 LSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVVQ 120
++F I+N F+++L +P++ +Q L++ I +Y + GF G+ + FRPGSV V
Sbjct: 5 VTFTITNEAFSAALLNPASWKHQLLRKIIHHQLQPLYHEAFPGFQGIGVLVFRPGSVAVN 64
Query: 121 LTLAF 125
+L F
Sbjct: 65 ASLVF 69
>gi|239745235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 664
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 63 LSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVVQ 120
++F I+N F+++L +P++ +Q L++ I +Y + GF G+ + FRPGSV V
Sbjct: 225 VTFTITNEAFSAALLNPASWKHQLLRKIIHHQLQPLYHEAFPGFQGIGVLVFRPGSVAVN 284
Query: 121 LTLAF 125
+L F
Sbjct: 285 ASLVF 289
>gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens]
Length = 797
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 FLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVV 119
F S ++N+ F++ L + S+ Y+ L++ +++ + + GF L + FR GSV+V
Sbjct: 576 FFSLRVANMAFSNDLFNKSSLEYRALEQQFTQLLVPYLRSNLTGFKQLEILNFRNGSVIV 635
Query: 120 QLTLAFREG-----TINVHDVETQFNQYKTEAASRYNLTISDVSVSDVP 163
+ F + T VH V +++ AA + +L I S++ P
Sbjct: 636 NSKMKFAKSVPYNLTKAVHGV---LEDFRSAAAQQLHLEIDSYSLNIEP 681
Score = 33.9 bits (76), Expect = 0.16
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 63 LSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQ-GGFLGLSNIKFRP------- 114
LS + N +F + L D + YYQEL +I+K+ GF + + FRP
Sbjct: 238 LSVSLVNQKFKAELADSQSPYYQELAGKSQLQMQKIFKKLPGFKKIHVLGFRPKKEKDGS 297
Query: 115 GSVVVQLTLAFREGTINVHDVET---QFNQYKTEAASRYNLTISD 156
S +QLT F+ + + F+ K E+ Y+ T+ +
Sbjct: 298 SSTEMQLTAIFKRHSAEAKSPASDLLSFDSNKIESEEVYHGTMEE 342
>gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]
Length = 1241
Score = 37.0 bits (84), Expect = 0.018
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 55 STGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKF 112
++G F S ++N+ F+ L + ++ Y+ L++ E+ + + GF L + F
Sbjct: 895 TSGALVVFFSLRVTNMMFSEDLFNKNSLEYKALEQRFLELLVPYLQSNLTGFQNLEILNF 954
Query: 113 RPGSVVVQLTLAFREGT-INVHD-VETQFNQYKTEAASRYNLTISDVSV 159
R GS+VV + F NV++ V + T A + NL I S+
Sbjct: 955 RNGSIVVNSRMKFANSVPPNVNNAVYMILEDFCTTAYNTMNLAIDKYSL 1003
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 35.4 bits (80), Expect = 0.054
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 43 SSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYK 100
+ + SS + S+ F+L+F I+NL ++ P T YQ +R+I + Q+++
Sbjct: 14305 TEMESSVYQPTSSSSTQHFYLNFTITNLPYSQDKAQPGTTNYQRNKRNIEDALNQLFR 14362
Score = 33.9 bits (76), Expect = 0.16
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQE 86
A+STP + SS+PSST A + F L+F I+NLQ+ + P + +
Sbjct: 12044 ATSTPVTSTFSPGISTSSIPSSTA--ATVPFMVPFTLNFTITNLQYEEDMRHPGSRKFNA 12101
Query: 87 LQRDISEMFLQIYK 100
+R++ + +++
Sbjct: 12102 TERELQGLLKPLFR 12115
Score = 32.0 bits (71), Expect = 0.59
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 28 SSTPGG---EKETSATQRSSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYY 84
+STPG + ETS T SS+P T A + F L+F I+NLQ+ + P + +
Sbjct: 13293 TSTPGTFTVQPETSETP-SSLPGPT---ATGPVLLPFTLNFTITNLQYEEDMRRPGSRKF 13348
Query: 85 QELQRDISEMFLQIYK 100
+R + + + ++K
Sbjct: 13349 NTTERVLQGLLMPLFK 13364
Score = 30.0 bits (66), Expect = 2.3
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 28 SSTPGG---EKETSATQRSSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYY 84
+STPG + TS T SS+PS T L F L+F I+NLQ+ + P + +
Sbjct: 12825 TSTPGTSTVDLGTSGTP-SSLPSPTSAGPLLVP---FTLNFTITNLQYEEDMHHPGSRKF 12880
Query: 85 QELQRDISEMFLQIYK 100
+R + + ++K
Sbjct: 12881 NTTERVLQGLLGPMFK 12896
Score = 28.9 bits (63), Expect = 5.0
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 28 SSTPGGEK-ETSATQRSSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQE 86
SSTPG + + SS+PS T L F L+F I+NL++ + P + +
Sbjct: 12670 SSTPGTSTVDLGSGTPSSLPSPTTAGPLLVP---FTLNFTITNLKYEEDMHCPGSRKFNT 12726
Query: 87 LQRDISEMFLQIYK 100
+R + + ++K
Sbjct: 12727 TERVLQSLLGPMFK 12740
Score = 28.9 bits (63), Expect = 5.0
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 28 SSTPGG---EKETSATQRSSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYY 84
+STPG + TS T SS+PS T L F L+F I+NLQ+ + P + +
Sbjct: 12981 TSTPGTSTVDLGTSGTP-SSLPSPTTAVPLLVP---FTLNFTITNLQYGEDMRHPGSRKF 13036
Query: 85 QELQRDISEMFLQIYK 100
+R + + ++K
Sbjct: 13037 NTTERVLQGLLGPLFK 13052
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 63 LSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYK 100
++FHI N +N S DP++ Y L RDI + +YK
Sbjct: 14204 INFHIVN--WNLSNPDPTSSEYITLLRDIQDKVTTLYK 14239
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 28 SSTPGGEKETSATQRSSVPSSTEKNALSTGVSF---FFLSFHISNLQFNSSLEDPSTDYY 84
+STPG T + S PSS + F L+F I+NLQ+ + P + +
Sbjct: 12356 TSTPG--TSTVDLRTSGTPSSLSSPTIMAAGPLLVPFTLNFTITNLQYGEDMGHPGSRKF 12413
Query: 85 QELQRDISEMFLQIYK 100
+R + + I+K
Sbjct: 12414 NTTERVLQGLLGPIFK 12429
Score = 28.1 bits (61), Expect = 8.6
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 40 TQRSSVPSST-------------------EKNALSTGVSFFFLSFHISNLQFNSSLEDPS 80
TQRSSVP+++ +A S + F L+F I+NL++ +++ P
Sbjct: 13597 TQRSSVPTTSIPGTPTVDLGTSGTPVSKPGPSAASPLLVLFTLNFTITNLRYEENMQHPG 13656
Query: 81 TDYYQELQRDISEMFLQIYK 100
+ + +R + + ++K
Sbjct: 13657 SRKFNTTERVLQGLLRSLFK 13676
>gi|239757138 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 959
Score = 35.4 bits (80), Expect = 0.054
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 43 SSVPSSTEKNALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYK 100
+ + SS + S+ F+L+F I+NL ++ P T YQ +R+I + Q+++
Sbjct: 757 TEMESSVYQPTSSSSTQHFYLNFTITNLPYSQDKAQPGTTNYQRNKRNIEDALNQLFR 814
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 63 LSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYK 100
++FHI N +N S DP++ Y L RDI + +YK
Sbjct: 656 INFHIVN--WNLSNPDPTSSEYITLLRDIQDKVTTLYK 691
>gi|89903008 neurofascin isoform 4 precursor [Homo sapiens]
Length = 1169
Score = 33.5 bits (75), Expect = 0.20
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 136 ETQFNQYKTEAASRYNLTIS--------DVSVSDVPFP-----FSAQSGAGVPGWGIALL 182
+T+F +T+ SRY T+S + + P P + Q+ GW I L
Sbjct: 985 QTKFTVQRTDPVSRYRFTLSARTQVGSGEAVTEESPAPPNEAYTNNQADIATQGWFIGL- 1043
Query: 183 VLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARD 219
+ A+A++ LI L VC +R G+ + +D
Sbjct: 1044 -----MCAIALLVLILLIVCFIKRSRGGKYPVREKKD 1075
>gi|15042969 transmembrane protein 27 [Homo sapiens]
Length = 222
Score = 33.1 bits (74), Expect = 0.27
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 129 TINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVL 188
T+ +V++ K + + L + +P + VP W I V+ C++
Sbjct: 95 TLPAVEVQSAIRMNKNRINNAFFLNDQTLEFLKIPSTLAPPMDPSVPIWIIIFGVIFCII 154
Query: 189 VALAIVYLIALAVCQCRRKNYGQLDIFPARD 219
+ +AI LI + Q RRKN ++ A D
Sbjct: 155 I-VAIALLILSGIWQRRRKNKEPSEVDDAED 184
>gi|4758508 transmembrane protease, serine 11D [Homo sapiens]
Length = 418
Score = 32.7 bits (73), Expect = 0.35
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 60 FFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQ 101
F+ SF + N+++NS L P+T Y+ L I + + +K+
Sbjct: 49 FYRSSFQLLNVEYNSQLNSPATQEYRTLSGRIESLITKTFKE 90
>gi|237858679 neurofascin isoform 3 precursor [Homo sapiens]
Length = 1174
Score = 31.6 bits (70), Expect = 0.78
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 136 ETQFNQYKTEAASRYNLTIS--------DVSVSDVPFP----------FSAQSGAGVPGW 177
+T+F +T+ SRY T+S + + P P + Q+ GW
Sbjct: 985 QTKFTVQRTDPVSRYRFTLSARTQVGSGEAVTEESPAPPNEATPTAAYTNNQADIATQGW 1044
Query: 178 GIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARD 219
I L + A+A++ LI L VC +R G+ + +D
Sbjct: 1045 FIGL------MCAIALLVLILLIVCFIKRSRGGKYPVREKKD 1080
>gi|237858677 neurofascin isoform 2 precursor [Homo sapiens]
Length = 1189
Score = 31.6 bits (70), Expect = 0.78
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 136 ETQFNQYKTEAASRYNLTIS--------DVSVSDVPFP----------FSAQSGAGVPGW 177
+T+F +T+ SRY T+S + + P P + Q+ GW
Sbjct: 1000 QTKFTVQRTDPVSRYRFTLSARTQVGSGEAVTEESPAPPNEATPTAAYTNNQADIATQGW 1059
Query: 178 GIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARD 219
I L + A+A++ LI L VC +R G+ + +D
Sbjct: 1060 FIGL------MCAIALLVLILLIVCFIKRSRGGKYPVREKKD 1095
>gi|190194423 SPARC-like 1 [Homo sapiens]
Length = 664
Score = 30.4 bits (67), Expect = 1.7
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 9 FFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPS---STEKNALSTGVSFFFLSF 65
FFL LL T + T + S ET A +++PS E+N T VS S
Sbjct: 6 FFLCLLGTAAAIPTNARLLSDHSKPTAETVAPDNTAIPSLRAEAEENEKETAVSTEDDSH 65
Query: 66 HISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAF 125
H + +S L+ + Q ++ S LGL + + G + V L A
Sbjct: 66 H--KAEKSSVLKSKEESHEQSAEQGKS--------SSQELGLKDQEDSDGHLSVNLEYAP 115
Query: 126 REGTINVHD 134
EGT+++ +
Sbjct: 116 TEGTLDIKE 124
>gi|190341024 SPARC-like 1 [Homo sapiens]
Length = 664
Score = 30.4 bits (67), Expect = 1.7
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 9 FFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPS---STEKNALSTGVSFFFLSF 65
FFL LL T + T + S ET A +++PS E+N T VS S
Sbjct: 6 FFLCLLGTAAAIPTNARLLSDHSKPTAETVAPDNTAIPSLRAEAEENEKETAVSTEDDSH 65
Query: 66 HISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAF 125
H + +S L+ + Q ++ S LGL + + G + V L A
Sbjct: 66 H--KAEKSSVLKSKEESHEQSAEQGKS--------SSQELGLKDQEDSDGHLSVNLEYAP 115
Query: 126 REGTINVHD 134
EGT+++ +
Sbjct: 116 TEGTLDIKE 124
>gi|23592222 olfactory receptor, family 5, subfamily P, member 2
[Homo sapiens]
Length = 322
Score = 30.0 bits (66), Expect = 2.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 138 QFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLI 197
Q N + + A L+ SD+SVS V FS+ G ++V VCV+ I LI
Sbjct: 169 QVNHFFCDFAPLLELSCSDISVSTVVLSFSS---------GSIIVVTVCVIAVCYIYILI 219
Query: 198 AL 199
+
Sbjct: 220 TI 221
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
V T V+ SSTPG + TSAT S++ SS +
Sbjct: 2228 VSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ 2262
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
V T V+ SSTPG + TSAT S++ SS +
Sbjct: 2102 VSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ 2136
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 28.5 bits (62), Expect = 6.6
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 20 VVTGSG-HASSTPGGEKETSATQR-----SSVPSSTEKNALSTGVSFFFLSFHISNLQFN 73
V+ GSG SS P ETSA S+ P ++ +++ S +S +FH +NL+ +
Sbjct: 1971 VLPGSGVEVSSVPESSSETSAYPEAGFGASAAPEASREDSGSPDLSETTSAFHEANLERS 2030
Query: 74 SSL 76
S L
Sbjct: 2031 SGL 2033
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 28.5 bits (62), Expect = 6.6
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 20 VVTGSG-HASSTPGGEKETSATQR-----SSVPSSTEKNALSTGVSFFFLSFHISNLQFN 73
V+ GSG SS P ETSA S+ P ++ +++ S +S +FH +NL+ +
Sbjct: 1971 VLPGSGVEVSSVPESSSETSAYPEAGFGASAAPEASREDSGSPDLSETTSAFHEANLERS 2030
Query: 74 SSL 76
S L
Sbjct: 2031 SGL 2033
>gi|166295173 kin of IRRE like [Homo sapiens]
Length = 757
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 203 QCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYE 248
Q +NY + + P + + YPTY PPS +R+PYE
Sbjct: 681 QLSYENYEKFNSHP----FPGAAGYPTYRLGYPQAPPSGLERTPYE 722
>gi|38201644 homeodomain-interacting protein kinase 1 isoform 4
[Homo sapiens]
Length = 816
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 121 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPG 176
LT++F VH+ + T AA+ +L SDVS+ + S A VPG
Sbjct: 177 LTMSFSNQLNTVHNQASVLASSSTAAAATLSLANSDVSLLNYQSALYPSSAAPVPG 232
>gi|38201642 homeodomain-interacting protein kinase 1 isoform 3
[Homo sapiens]
Length = 836
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 121 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPG 176
LT++F VH+ + T AA+ +L SDVS+ + S A VPG
Sbjct: 197 LTMSFSNQLNTVHNQASVLASSSTAAAATLSLANSDVSLLNYQSALYPSSAAPVPG 252
>gi|38201640 homeodomain-interacting protein kinase 1 isoform 1
[Homo sapiens]
Length = 1210
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 121 LTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPG 176
LT++F VH+ + T AA+ +L SDVS+ + S A VPG
Sbjct: 571 LTMSFSNQLNTVHNQASVLASSSTAAAATLSLANSDVSLLNYQSALYPSSAAPVPG 626
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,230,247
Number of Sequences: 37866
Number of extensions: 421019
Number of successful extensions: 1792
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 64
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.