Guide to the Human Genome
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Name: TMPRSS11D Sequence: fasta or formatted (418aa) NCBI GI: 4758508
Description:

transmembrane protease, serine 11D

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         31           3
 C cysteine            2.2          9           1
 D aspartate           3.6         15           1
 E glutamate           4.1         17           2
 F phenylalanine       3.3         14           1
 G glycine             7.7         32           2
 H histidine           2.2          9           2
 I isoleucine          6.7         28           2
 K lysine              2.4         10           1
 L leucine             8.6         36           2
 M methionine          1.7          7           1
 N asparagine          7.2         30           3
 P proline             4.1         17           2
 Q glutamine           5.0         21           2
 R arginine            6.5         27           2
 S serine              8.4         35           2
 T threonine           6.5         27           2
 V valine              7.4         31           2
 W tryptophan          2.2          9           1
 Y tyrosine            3.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 11D 
TMPRSS11A             0.399   transmembrane protease, serine 11A isoform 2 
TMPRSS11A             0.394   transmembrane protease, serine 11A isoform 1 
TMPRSS11F             0.373   transmembrane protease, serine 11F 
TMPRSS11E             0.370   transmembrane protease, serine 11E 
TMPRSS11E2            0.370   transmembrane protease, serine 11E2 
TMPRSS11B             0.352   transmembrane protease, serine 11B 
HPN                   0.228   hepsin 
HPN                   0.228   hepsin 
TMPRSS3               0.224   transmembrane protease, serine 3 isoform 1 
TMPRSS4               0.223   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.223   transmembrane protease, serine 4 isoform 1 
TMPRSS2               0.217   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.217   transmembrane protease, serine 2 isoform 2 
TESSP1                0.208   testis-specific serine protease 1 
TMPRSS5               0.205   transmembrane protease, serine 5 
ST14                  0.205   matriptase 
TMPRSS9               0.205   transmembrane protease, serine 9 
PRSS7                 0.201   enterokinase precursor 
TMPRSS6               0.201   transmembrane protease, serine 6 
ACR                   0.199   acrosin precursor 
PRSS21                0.198   testisin isoform 2 
KLKB1                 0.196   plasma kallikrein B1 precursor 
PRSS21                0.195   testisin isoform 1 
PRSS8                 0.195   prostasin preproprotein 
TMPRSS13              0.194   transmembrane protease, serine 13 
F11                   0.193   coagulation factor XI precursor 
TMPRSS12              0.193   transmembrane protease, serine 12 
PRSS33                0.190   protease, serine, 33 
OVCH1                 0.190   ovochymase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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