Guide to the Human Genome
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Name: FRMPD2 Sequence: fasta or formatted (261aa) NCBI GI: 63252916
Description:

FERM and PDZ domain containing 2 isoform 2

Referenced in:

Cytoskeleton
PDZ Domain

Other entries for this name:
alt prot [1309aa] FERM and PDZ domain containing 2 isoform 3
alt prot [1287aa] FERM and PDZ domain containing 2 isoform 1
alt prot [320aa] FERM and PDZ domain containing 2 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         18           2
 C cysteine            3.1          8           1
 D aspartate           5.4         14           1
 E glutamate           8.8         23           2
 F phenylalanine       3.1          8           1
 G glycine             6.5         17           1
 H histidine           2.3          6           1
 I isoleucine          3.4          9           2
 K lysine              4.2         11           2
 L leucine            11.1         29           3
 M methionine          1.1          3           1
 N asparagine          2.3          6           1
 P proline             6.9         18           3
 Q glutamine           4.6         12           1
 R arginine            6.9         18           1
 S serine             10.7         28           2
 T threonine           5.7         15           1
 V valine              4.6         12           1
 W tryptophan          1.5          4           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM and PDZ domain containing 2 isoform 2 
FRMPD2                1.000   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                1.000   FERM and PDZ domain containing 2 isoform 4 
FRMPD2                1.000   FERM and PDZ domain containing 2 isoform 3 
FRMPD2L1              0.998   FERM and PDZ domain containing 2 like 1 isoform 4 [...
FRMPD2L1              0.998   FERM and PDZ domain containing 2 like 1 isoform 2 [...
FRMPD2L2              0.998   FERM and PDZ domain containing 2 like 2 isoform 4 [...
FRMPD2L2              0.998   FERM and PDZ domain containing 2 like 2 isoform 2 [...
PTPN13                0.194   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.194   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.194   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.194   protein tyrosine phosphatase, non-receptor type 13 is...
NOS1                  0.057   nitric oxide synthase 1, neuronal 
LIN7A                 0.055   lin-7 homolog A 
IL16                  0.053   interleukin 16 isoform 2 
IL16                  0.053   interleukin 16 isoform 1 precursor 
LIN7C                 0.053   lin-7 homolog C 
RADIL                 0.053   Rap GTPase interactor 
PARD3B                0.053   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.053   par-3 partitioning defective 3 homolog B isoform c ...
MAGI2                 0.051   membrane associated guanylate kinase, WW and PDZ dom...
LIN7B                 0.051   lin-7 homolog B 
INADL                 0.049   InaD-like 
PARD3                 0.049   partitioning-defective protein 3 homolog 
MAGI3                 0.049   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.049   membrane-associated guanylate kinase-related  3 iso...
MPDZ                  0.047   multiple PDZ domain protein 
PARD3B                0.047   par-3 partitioning defective 3 homolog B isoform b ...
LNX1                  0.047   ligand of numb-protein X 1 isoform a 
LNX1                  0.047   ligand of numb-protein X 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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