Guide to the Human Genome
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Name: FRMPD2L1 Sequence: fasta or formatted (320aa) NCBI GI: 110346445
Description:

FERM and PDZ domain containing 2 like 1 isoform 4

Not currently referenced in the text

Other entries for this name:
alt prot {261aa} FERM and PDZ domain containing 2 like 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         21           2
 C cysteine            3.4         11           1
 D aspartate           5.3         17           1
 E glutamate           7.5         24           2
 F phenylalanine       2.8          9           1
 G glycine             6.9         22           1
 H histidine           2.2          7           1
 I isoleucine          3.4         11           2
 K lysine              4.1         13           2
 L leucine            10.9         35           3
 M methionine          1.6          5           1
 N asparagine          2.2          7           1
 P proline             7.2         23           3
 Q glutamine           5.6         18           2
 R arginine            7.2         23           2
 S serine             10.0         32           2
 T threonine           5.6         18           1
 V valine              5.6         18           1
 W tryptophan          1.2          4           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM and PDZ domain containing 2 like 1 isoform 4 [... 
FRMPD2L2              1.000   FERM and PDZ domain containing 2 like 2 isoform 4 [...
FRMPD2                0.995   FERM and PDZ domain containing 2 isoform 4 
FRMPD2                0.971   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.971   FERM and PDZ domain containing 2 isoform 3 
FRMPD2L1              0.810   FERM and PDZ domain containing 2 like 1 isoform 2 [...
FRMPD2L2              0.810   FERM and PDZ domain containing 2 like 2 isoform 2 [...
FRMPD2                0.808   FERM and PDZ domain containing 2 isoform 2 
PTPN13                0.208   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.208   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.208   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.208   protein tyrosine phosphatase, non-receptor type 13 is...
MPDZ                  0.061   multiple PDZ domain protein 
INADL                 0.058   InaD-like 
PDZD2                 0.056   PDZ domain containing 2 
MAGI2                 0.054   membrane associated guanylate kinase, WW and PDZ dom...
SCRIB                 0.054   scribble isoform b 
SCRIB                 0.054   scribble isoform a 
LNX1                  0.053   ligand of numb-protein X 1 isoform a 
LNX1                  0.053   ligand of numb-protein X 1 isoform b 
LNX2                  0.048   ligand of numb-protein X 2 
LIN7A                 0.046   lin-7 homolog A 
SLC9A3R2              0.046   solute carrier family 9 isoform 3 regulator 2 isofo...
SLC9A3R2              0.046   solute carrier family 9 isoform 3 regulator 2 isofor...
LIN7C                 0.046   lin-7 homolog C 
NOS1                  0.045   nitric oxide synthase 1, neuronal 
IL16                  0.045   interleukin 16 isoform 2 
GRIP2                 0.045   glutamate receptor interacting protein 2 
GRIP1                 0.043   glutamate receptor interacting protein 1 
LIN7B                 0.043   lin-7 homolog B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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