Guide to the Human Genome
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Name: C6orf129 Sequence: fasta or formatted (97aa) NCBI GI: 63003894
Description:

hypothetical protein LOC154467

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          6           1
 C cysteine            1.0          1           1
 D aspartate           2.1          2           1
 E glutamate          12.4         12           2
 F phenylalanine       2.1          2           1
 G glycine             2.1          2           1
 H histidine           1.0          1           1
 I isoleucine          3.1          3           1
 K lysine             10.3         10           3
 L leucine            16.5         16           2
 M methionine          4.1          4           1
 N asparagine          7.2          7           1
 P proline             1.0          1           1
 Q glutamine           2.1          2           1
 R arginine            9.3          9           2
 S serine              8.2          8           1
 T threonine           3.1          3           1
 V valine              4.1          4           1
 W tryptophan          1.0          1           1
 Y tyrosine            3.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC154467 
CENPF                 0.079   centromere protein F 
CCDC88A               0.073   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.073   coiled-coil domain containing 88A isoform 1 
HIP1                  0.067   huntingtin interacting protein 1 
SEC22B                0.061   SEC22 vesicle trafficking protein homolog B 
GOLGB1                0.061   golgi autoantigen, golgin subfamily b, macrogolgin ...
TEX9                  0.055   testis expressed 9 
SYCP1                 0.048   synaptonemal complex protein 1 
VTI1B                 0.048   vesicle transport through interaction with t-SNAREs 1...
EEA1                  0.048   early endosome antigen 1, 162kD 
CCDC147               0.048   coiled-coil domain containing 147 
MTUS1                 0.042   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.042   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.042   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.042   mitochondrial tumor suppressor 1 isoform 4 
DMRT2                 0.042   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.042   doublesex and mab-3 related transcription factor 2 is...
ERC2                  0.036   cytomatrix protein p110 
MYH7                  0.036   myosin, heavy chain 7, cardiac muscle, beta 
SMC2                  0.036   structural maintenance of chromosomes 2 
SMC2                  0.036   structural maintenance of chromosomes 2 
SMC2                  0.036   structural maintenance of chromosomes 2 
CCDC88C               0.036   DVL-binding protein DAPLE 
ROCK2                 0.030   Rho-associated, coiled-coil containing protein kinas...
MSN                   0.030   moesin 
FHAD1                 0.030   forkhead-associated (FHA) phosphopeptide binding do...
KIF7                  0.030   kinesin family member 7 
KIAA0774              0.030   hypothetical protein LOC23281 isoform b 
CCDC41                0.030   NY-REN-58 antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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