VTI1B 32670

Name: VTI1B	Sequence: fasta or formatted (232aa)		NCBI GI: 5454166
Description: vesicle transport through interaction with t-SNAREs 1B		Referenced in: ER, Golgi, and the Secretory Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 14 2 C cysteine 0.0 0 0 D aspartate 3.0 7 1 E glutamate 11.6 27 3 F phenylalanine 2.6 6 2 G glycine 5.6 13 2 H histidine 3.0 7 1 I isoleucine 5.6 13 3 K lysine 6.5 15 3 L leucine 12.9 30 3 M methionine 3.4 8 2 N asparagine 3.9 9 1 P proline 2.2 5 1 Q glutamine 4.3 10 2 R arginine 9.5 22 1 S serine 8.6 20 2 T threonine 6.0 14 2 V valine 2.6 6 1 W tryptophan 0.0 0 0 Y tyrosine 2.6 6 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vesicle transport through interaction with t-SNAREs 1... VTI1A 0.200 SNARE Vti1a-beta protein TCHH 0.040 trichohyalin SLK 0.038 serine/threonine kinase 2 ANKRD35 0.035 ankyrin repeat domain 35 C14orf45 0.035 hypothetical protein LOC80127 LOC645202 0.033 PREDICTED: hypothetical protein LOC645202 RAD50 0.031 RAD50 homolog isoform 2 RAD50 0.031 RAD50 homolog isoform 1 GOLGA2 0.028 Golgi autoantigen, golgin subfamily a, 2 LOC100133758 0.024 PREDICTED: hypothetical protein, partial SCLT1 0.024 sodium channel associated protein 1 LOC727832 0.024 golgi autoantigen, golgin subfamily a-like KRT8 0.024 keratin 8 CGNL1 0.024 cingulin-like 1 CCDC46 0.024 coiled-coil domain containing 46 isoform a MYH14 0.021 myosin, heavy chain 14 isoform 1 MYH14 0.021 myosin, heavy chain 14 isoform 2 MYH14 0.021 myosin, heavy chain 14 isoform 3 MYH7B 0.021 myosin, heavy polypeptide 7B, cardiac muscle, beta ... LZTS2 0.021 leucine zipper, putative tumor suppressor 2 MYH7 0.021 myosin, heavy chain 7, cardiac muscle, beta PLCB1 0.021 phosphoinositide-specific phospholipase C beta 1 iso... STX8 0.021 syntaxin 8 SAPS1 0.021 SAPS domain family, member 1 KIF16B 0.021 kinesin-like motor protein C20orf23 FHAD1 0.021 forkhead-associated (FHA) phosphopeptide binding do... TPM3 0.019 tropomyosin 3 isoform 1 SNAP29 0.019 synaptosomal-associated protein 29 C6orf129 0.019 hypothetical protein LOC154467 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.