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Search of human proteins with 62865862
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62865862 purine-rich element binding protein G isoform B
[Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865862 purine-rich element binding protein G isoform B [Hom... 661 0.0
gi|7019507 purine-rich element binding protein G isoform A [Homo... 588 e-168
gi|5032007 purine-rich element binding protein A [Homo sapiens] 243 2e-64
gi|15147219 purine-rich element binding protein B [Homo sapiens] 232 3e-61
gi|23510368 homeobox D11 [Homo sapiens] 35 0.12
gi|38198663 potassium channel tetramerisation domain containing ... 33 0.34
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 33 0.34
gi|4758392 forkhead box D1 [Homo sapiens] 33 0.44
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 33 0.44
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 32 0.58
gi|46430491 scratch 2 protein [Homo sapiens] 32 0.58
gi|4758168 distal-less homeobox 2 [Homo sapiens] 32 0.76
gi|62526045 zinc finger protein 638 [Homo sapiens] 32 0.76
gi|21626468 zinc finger protein 638 [Homo sapiens] 32 0.76
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 32 0.99
gi|51479145 brefeldin A-inhibited guanine nucleotide-exchange pr... 32 0.99
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 0.99
gi|122937424 one cut homeobox 3 [Homo sapiens] 32 0.99
gi|44917619 kelch domain containing 10 [Homo sapiens] 31 1.3
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 31 1.7
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 31 1.7
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 31 1.7
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 31 1.7
gi|4503765 fragile X mental retardation 1 [Homo sapiens] 30 2.2
gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens] 30 2.2
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 30 2.2
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 30 2.2
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.2
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.2
gi|33620755 YEATS domain containing 2 [Homo sapiens] 30 2.2
>gi|62865862 purine-rich element binding protein G isoform B [Homo
sapiens]
Length = 322
Score = 661 bits (1705), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60
MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL
Sbjct: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60
Query: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120
ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG
Sbjct: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120
Query: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180
DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN
Sbjct: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180
Query: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240
RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI
Sbjct: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240
Query: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKSRENIN 300
EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKSRENIN
Sbjct: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKSRENIN 300
Query: 301 LFHCCQIKHKEQPHDTTKTVEE 322
LFHCCQIKHKEQPHDTTKTVEE
Sbjct: 301 LFHCCQIKHKEQPHDTTKTVEE 322
>gi|7019507 purine-rich element binding protein G isoform A [Homo
sapiens]
Length = 347
Score = 588 bits (1516), Expect = e-168
Identities = 291/302 (96%), Positives = 294/302 (97%), Gaps = 1/302 (0%)
Query: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60
MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL
Sbjct: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60
Query: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120
ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG
Sbjct: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120
Query: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180
DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN
Sbjct: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180
Query: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240
RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI
Sbjct: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240
Query: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNY-PKSRENI 299
EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLK++ P R I
Sbjct: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTI 300
Query: 300 NL 301
+
Sbjct: 301 TV 302
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 243 bits (619), Expect = 2e-64
Identities = 145/292 (49%), Positives = 177/292 (60%), Gaps = 69/292 (23%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDI 67
GGGGG G GG + GG G + L QH E QELASKRVDI
Sbjct: 32 GGGGGGGGGGGSGGGGGGAPGGL----QH-------------------ETQELASKRVDI 68
Query: 68 QKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDFIEHYA 127
Q KRFYLDVKQ+++GRFLKIAEV G KS+LTLS+SVA E +D LGDFIEHYA
Sbjct: 69 QNKRFYLDVKQNAKGRFLKIAEVGAGGN------KSRLTLSMSVAVEFRDYLGDFIEHYA 122
Query: 128 HLGLKGHRQEHGHSKEQGSRRRQKHSAPS-PPVSVGSEEHPHSVLKTDYIERDNRKYYLD 186
LG PS PP +++ P LK++++ R+NRKYY+D
Sbjct: 123 QLG------------------------PSQPPDLAQAQDEPRRALKSEFLVRENRKYYMD 158
Query: 187 LKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLIEDYGEG 246
LKENQRGRFLRIRQT+ RG G+ Q QTI LPAQG+IEFRDAL +LI+DYG
Sbjct: 159 LKENQRGRFLRIRQTVNRGPGL------GSTQGQTIALPAQGLIEFRDALAKLIDDYGV- 211
Query: 247 DIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKSREN 298
+++P ELPEGTS VDNKRF+FDVGSNKYG+F++++ + N
Sbjct: 212 --------EEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRN 255
>gi|15147219 purine-rich element binding protein B [Homo sapiens]
Length = 312
Score = 232 bits (592), Expect = 3e-61
Identities = 137/261 (52%), Positives = 167/261 (63%), Gaps = 38/261 (14%)
Query: 49 NQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLS 108
++ GG E QELASKR+DIQ KRFYLDVKQ+++GRFLKIAEV G KS+LTLS
Sbjct: 23 SRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGS------KSRLTLS 76
Query: 109 LSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPH 168
++VAAE +D LGDFIEHYA LG Q ++E G RR
Sbjct: 77 MAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR------------------- 117
Query: 169 SVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQE--QTIVLPA 226
LK++++ R+NRKYYLDLKENQRGRFLRIRQT+ RG G G G + QTI LPA
Sbjct: 118 -ALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPA 176
Query: 227 QGMIEFRDALVQLIEDYGEGDIEERRGGDDDPL---------ELPEGTSFRVDNKRFYFD 277
QG+IEFRDAL +LI+DYG G+ +E GG ELPEGTS VD+KRF+FD
Sbjct: 177 QGLIEFRDALAKLIDDYG-GEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFD 235
Query: 278 VGSNKYGIFLKLTNYPKSREN 298
VG NKYG+FL+++ S N
Sbjct: 236 VGCNKYGVFLRVSEVKPSYRN 256
Score = 57.0 bits (136), Expect = 2e-08
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 158 PVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLG 217
P S G E L + ++ N+++YLD+K+N +GRFL+I + G G G
Sbjct: 21 PASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEV---GAG---------G 68
Query: 218 QEQTIVLPAQGMIEFRDALVQLIEDY---GEGDIEERRGGDDD---PLELPEGTSFRVDN 271
+ + L EFRD+L IE Y G E+ G ++ P + +N
Sbjct: 69 SKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVREN 128
Query: 272 KRFYFDVGSNKYGIFLKL 289
+++Y D+ N+ G FL++
Sbjct: 129 RKYYLDLKENQRGRFLRI 146
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 34.7 bits (78), Expect = 0.12
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 1 MERAR---RRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAE 56
+ERA+ R GGGGG GG + GG G + P+YAA+A A AAE
Sbjct: 68 LERAKWPYRGGGGGGSAGGGSSGGGPGGGGG-----GAGGYAPYYAAAAAAAAAAAAAE 121
>gi|38198663 potassium channel tetramerisation domain containing 8
[Homo sapiens]
Length = 473
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/100 (26%), Positives = 40/100 (40%)
Query: 23 SGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRG 82
SG S + L + SH P+ A A Q KK + +
Sbjct: 348 SGTSCNELSTSSCDSHSEASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPVQWIPPPDKR 407
Query: 83 RFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDF 122
R ++ + I + R+ N+ K K+ LSV E+K C+ DF
Sbjct: 408 RNSELFQTLISKSRETNLSKKKVCEKLSVEEEMKKCIQDF 447
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 33.1 bits (74), Expect = 0.34
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHS--HYPHYAASATPNQAGG 53
GGGGG G GG GG L S HS H H AA+A N G
Sbjct: 166 GGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSG 213
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 32.7 bits (73), Expect = 0.44
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDI 67
GGGGG G GG GSG + P + A +P + +EI E S R
Sbjct: 102 GGGGGGGAGGGGSAGSGAKNPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPY 161
Query: 68 QKKRF 72
+++F
Sbjct: 162 YREKF 166
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 32.7 bits (73), Expect = 0.44
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATP 48
GGGGG G G +++ GL + A+H H+ H+ A P
Sbjct: 242 GGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHP 282
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 32.3 bits (72), Expect = 0.58
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 8 GGGGGRGRGGKNVGG-SGLSKSRLYPQAQHSHY--PH 41
G GGG G GG GG GL K P H H+ PH
Sbjct: 10 GAGGGSGSGGSGSGGLIGLMKDAFQPHHHHHHHLSPH 46
>gi|46430491 scratch 2 protein [Homo sapiens]
Length = 307
Score = 32.3 bits (72), Expect = 0.58
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 5 RRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSH 38
RRRGGGGG G + GG+G R QA H
Sbjct: 120 RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 32.0 bits (71), Expect = 0.76
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 5 RRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELA 61
+R GGGG G GG G SG S S A +YP Y + +G A+ +Q A
Sbjct: 247 QRMAGGGGPGSGGSGAGSSGSSPSSA-ASAFLGNYPWYHQT-----SGSASHLQATA 297
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 32.0 bits (71), Expect = 0.76
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 44/193 (22%)
Query: 161 VGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIG---------- 210
VG EE + LK + + N + D K N++ R + ++T + +G
Sbjct: 1780 VGEEEDGDNDLKVELAQSKN-DHPTDKKGNRKKRAVDTKKTKLESLSQVGPVNENVMEED 1838
Query: 211 ------------------YFGHSLGQEQTIVL-PAQGMIEFRDALVQLIEDYGEGDIEER 251
G +L E+ +V PA+G F+ + ++ E+ G D E
Sbjct: 1839 LKTMIERHLTAKTPTKRVRIGKTLPSEKAVVTEPAKGEEAFQ--MSEVDEESGLKDSEPE 1896
Query: 252 R---------GGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKS---RENI 299
R G ++PE F V F+ + S Y +TN+ KS ++N
Sbjct: 1897 RKRKKTEDSSSGKSVASDVPEELDFLVPKAGFFCPICSLFYSGEKAMTNHCKSTRHKQNT 1956
Query: 300 NLFHCCQIKHKEQ 312
F Q K KEQ
Sbjct: 1957 EKFMAKQRKEKEQ 1969
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 32.0 bits (71), Expect = 0.76
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 44/193 (22%)
Query: 161 VGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIG---------- 210
VG EE + LK + + N + D K N++ R + ++T + +G
Sbjct: 1780 VGEEEDGDNDLKVELAQSKN-DHPTDKKGNRKKRAVDTKKTKLESLSQVGPVNENVMEED 1838
Query: 211 ------------------YFGHSLGQEQTIVL-PAQGMIEFRDALVQLIEDYGEGDIEER 251
G +L E+ +V PA+G F+ + ++ E+ G D E
Sbjct: 1839 LKTMIERHLTAKTPTKRVRIGKTLPSEKAVVTEPAKGEEAFQ--MSEVDEESGLKDSEPE 1896
Query: 252 R---------GGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKS---RENI 299
R G ++PE F V F+ + S Y +TN+ KS ++N
Sbjct: 1897 RKRKKTEDSSSGKSVASDVPEELDFLVPKAGFFCPICSLFYSGEKAMTNHCKSTRHKQNT 1956
Query: 300 NLFHCCQIKHKEQ 312
F Q K KEQ
Sbjct: 1957 EKFMAKQRKEKEQ 1969
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 31.6 bits (70), Expect = 0.99
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 5 RRRGGGGG--RGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGA 54
+ RGGGG RG GG GSG +KSR +A S H A + GGA
Sbjct: 722 KSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASK-SHGGGGAKRRRGGGA 772
>gi|51479145 brefeldin A-inhibited guanine nucleotide-exchange
protein 1 [Homo sapiens]
Length = 1849
Score = 31.6 bits (70), Expect = 0.99
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 143 EQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTM 202
E+ +K S P GS P KT++IE D KY+L + + + RI T
Sbjct: 42 EEIKAETEKQSPPHGEAKAGSSTLPPVKSKTNFIEAD--KYFLPFELACQSKCPRIVSTS 99
Query: 203 MRGTGMIGYFGHSLGQEQTIVLPAQGMIE 231
+ + +GH G P + +I+
Sbjct: 100 LDCLQKLIAYGHLTGNAPDSTTPGKKLID 128
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 31.6 bits (70), Expect = 0.99
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 8 GGGGGRGRGGKNVGGSG-------------LSKSR--LYPQAQHSHYPHYAASATPNQA 51
GGGGG G GG GGSG S+SR PQ H P +SA +QA
Sbjct: 2303 GGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPVRHHPPVLVSSAASSQA 2361
Score = 28.9 bits (63), Expect = 6.4
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRV 65
GGGGG G GG GG G S P H S P+ GGA R+
Sbjct: 2292 GGGGGGGSGGS--GGGGGSGGGGAPSGGSGH------SGGPSSCGGAPSTSRSRPSRI 2341
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 31.6 bits (70), Expect = 0.99
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYP----QAQHSHYPHYAASATPNQAGG---AAEIQEL 60
GGGGG G GG GSG + L P A +H PH GG A +E+
Sbjct: 265 GGGGGTGSGG---AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEI 321
Query: 61 ASKRV 65
+K V
Sbjct: 322 NTKEV 326
>gi|44917619 kelch domain containing 10 [Homo sapiens]
Length = 442
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 2 ERARRRGGG------GGRGRGGKNVGGSGLSKSRLYPQAQHSHYPH 41
+R RRRGGG GG G GG + G G +L Q S PH
Sbjct: 8 DRNRRRGGGAAGAGGGGSGAGGGSGGSGGRGTGQLNRFVQLSGRPH 53
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 30.8 bits (68), Expect = 1.7
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 101 RKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVS 160
RK++ T+S+ V +K L + + GLK + SKE + R SA SPP
Sbjct: 318 RKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSS-SASSPPKK 376
Query: 161 VGSEEHPHS 169
H HS
Sbjct: 377 EHHHHHHHS 385
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 1.7
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 101 RKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVS 160
RK++ T+S+ V +K L + + GLK + SKE + R SA SPP
Sbjct: 306 RKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSS-SASSPPKK 364
Query: 161 VGSEEHPHS 169
H HS
Sbjct: 365 EHHHHHHHS 373
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 3 RARRRGGGGGRGRGGKNVGGSGL 25
R R RG G GRGRG GGSGL
Sbjct: 82 RGRGRGRGRGRGRGRPPSGGSGL 104
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 3 RARRRGGGGGRGRGGKNVGGSGL 25
R R RG G GRGRG GGSGL
Sbjct: 82 RGRGRGRGRGRGRGRPPSGGSGL 104
>gi|4503765 fragile X mental retardation 1 [Homo sapiens]
Length = 632
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 6 RRGGGGGRGRGGKNVGG 22
RR GGGGRG+GG+ GG
Sbjct: 532 RRRGGGGRGQGGRGRGG 548
>gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens]
Length = 2459
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 109 LSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQ-GSRRRQKHSAPS 156
LS E+ D L ++ + LG+K R+E G S+EQ GS + +HS P+
Sbjct: 2407 LSEEGEIVDLL--LMKILSFLGIKSKREEPGSSREQPGSLSQTRHSRPA 2453
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 30.4 bits (67), Expect = 2.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLY 31
GGGGG G GG GG S S LY
Sbjct: 750 GGGGGGGGGGAGGGGPSASNSLLY 773
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 30.4 bits (67), Expect = 2.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLY 31
GGGGG G GG GG S S LY
Sbjct: 731 GGGGGGGGGGAGGGGPSASNSLLY 754
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 2 ERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQH-------SHYPHYAASATPNQ 50
+ A G GGG +GGK G S + S L+ + + S +PH+ PN+
Sbjct: 628 QTAEGEGAGGGAKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNE 683
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 2 ERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQH-------SHYPHYAASATPNQ 50
+ A G GGG +GGK G S + S L+ + + S +PH+ PN+
Sbjct: 628 QTAEGEGAGGGAKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNE 683
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATP 48
GGGG G GG GG S + +QH Y Y TP
Sbjct: 818 GGGGSTGGGGGTAGGGTQSTAGPGGISQHLTYTSYILKQTP 858
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,933,322
Number of Sequences: 37866
Number of extensions: 608973
Number of successful extensions: 4442
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 4014
Number of HSP's gapped (non-prelim): 353
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.