Guide to the Human Genome
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Name: SCRT2 Sequence: fasta or formatted (307aa) NCBI GI: 46430491
Description:

scratch 2 protein

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         42           2
 C cysteine            4.2         13           1
 D aspartate           4.2         13           1
 E glutamate           3.6         11           2
 F phenylalanine       3.3         10           2
 G glycine            11.7         36           5
 H histidine           5.5         17           1
 I isoleucine          0.7          2           1
 K lysine              5.5         17           2
 L leucine             6.2         19           2
 M methionine          2.0          6           1
 N asparagine          1.3          4           1
 P proline             9.1         28           4
 Q glutamine           2.9          9           1
 R arginine            7.5         23           4
 S serine              8.8         27           2
 T threonine           3.6         11           1
 V valine              2.0          6           1
 W tryptophan          0.3          1           1
 Y tyrosine            3.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scratch 2 protein 
SCRT1                 0.546   scratch 
SNAI2                 0.248   snail 2 
SNAI3                 0.230   snail homolog 3 
SNAI1                 0.206   snail 1 homolog 
ZNF282                0.167   zinc finger protein 282 
ZKSCAN3               0.163   zinc finger with KRAB and SCAN domains 3 
ZNF782                0.159   zinc finger protein 782 
ZNF624                0.159   zinc finger protein 624 
ZNF358                0.157   zinc finger protein 358 
ZNF572                0.156   zinc finger protein 572 
ZNF135                0.156   zinc finger protein 135 
ZNF91                 0.154   zinc finger protein 91 
ZNF577                0.154   zinc finger protein 577 isoform a 
ZNF43                 0.154   zinc finger protein 43 
ZNF577                0.152   zinc finger protein 577 isoform b 
ZKSCAN4               0.152   zinc finger with KRAB and SCAN domains 4 
ZNF333                0.152   zinc finger protein 333 
ZNF441                0.151   zinc finger protein 441 
ZNF484                0.151   zinc finger protein 484 isoform b 
ZNF484                0.151   zinc finger protein 484 isoform a 
ZNF585A               0.151   zinc finger protein 585A 
ZNF585A               0.151   zinc finger protein 585A 
ZNF213                0.151   zinc finger protein 213 
ZNF213                0.151   zinc finger protein 213 
ZNF846                0.151   zinc finger protein 846 
ZNF568                0.151   zinc finger protein 568 
ZNF726                0.149   PREDICTED: zinc finger protein 726 
ZNF726                0.149   PREDICTED: zinc finger protein 726 
ZNF726                0.149   PREDICTED: zinc finger protein 726 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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