Guide to the Human Genome
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Name: LOC100292466 Sequence: fasta or formatted (82aa) NCBI GI: 239755528
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5          7           1
 C cysteine            3.7          3           1
 D aspartate           2.4          2           1
 E glutamate           3.7          3           1
 F phenylalanine       1.2          1           1
 G glycine             9.8          8           1
 H histidine           2.4          2           1
 I isoleucine          1.2          1           1
 K lysine              0.0          0           0
 L leucine             6.1          5           2
 M methionine          2.4          2           1
 N asparagine          3.7          3           1
 P proline            17.1         14           1
 Q glutamine           1.2          1           1
 R arginine           15.9         13           2
 S serine              8.5          7           1
 T threonine           3.7          3           1
 V valine              8.5          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289816          1.000   PREDICTED: hypothetical protein XP_002347235 
LOC100289633          1.000   PREDICTED: hypothetical protein XP_002343096 
LOC100292934          0.053   PREDICTED: hypothetical protein 
LOC100131435          0.047   PREDICTED: hypothetical protein 
PLXNA4                0.047   plexin A4 isoform 1 
NUDT17                0.047   nudix (nucleoside diphosphate linked moiety X)-type ...
LOC100128071          0.040   PREDICTED: hypothetical protein LOC100128071 
LOC100128071          0.040   PREDICTED: hypothetical protein LOC100128071 
LOC100128071          0.040   PREDICTED: hypothetical protein LOC100128071 
LOC100131435          0.040   PREDICTED: hypothetical protein 
LOC100131435          0.040   PREDICTED: hypothetical protein 
CRH                   0.033   corticotropin releasing hormone precursor 
LOC100131311          0.033   PREDICTED: hypothetical protein 
LOC100288439          0.033   PREDICTED: hypothetical protein 
LOC100131311          0.033   PREDICTED: hypothetical protein 
LOC100131311          0.033   PREDICTED: hypothetical protein 
LOC100292143          0.033   PREDICTED: hypothetical protein 
LOC100129103          0.033   PREDICTED: similar to hCG2038970 
LOC100132261          0.033   PREDICTED: similar to hCG2023245 
SRRM1                 0.033   serine/arginine repetitive matrix 1 
DMWD                  0.027   dystrophia myotonica-containing WD repeat motif prot...
LOC730883             0.027   PREDICTED: hypothetical protein 
LOC730883             0.027   PREDICTED: hypothetical protein 
SPEG                  0.027   SPEG complex locus 
AFF3                  0.020   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.020   AF4/FMR2 family, member 3 isoform 1 
LOC100292629          0.020   PREDICTED: hypothetical protein 
LOC100289960          0.020   PREDICTED: hypothetical protein XP_002346853 
LOC100286905          0.020   PREDICTED: hypothetical protein XP_002342691 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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