Guide to the Human Genome
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Name: NUDT4 Sequence: fasta or formatted (181aa) NCBI GI: 40317634
Description:

nudix-type motif 4 isoform beta

Referenced in:

Nucleotide Pathways

Other entries for this name:
alt prot [180aa] nudix-type motif 4 isoform alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         11           2
 C cysteine            2.2          4           1
 D aspartate           4.4          8           1
 E glutamate          10.5         19           3
 F phenylalanine       3.3          6           1
 G glycine             7.7         14           3
 H histidine           1.7          3           1
 I isoleucine          2.8          5           1
 K lysine              7.2         13           2
 L leucine             8.3         15           2
 M methionine          1.7          3           2
 N asparagine          3.9          7           2
 P proline             5.5         10           1
 Q glutamine           3.9          7           1
 R arginine            6.6         12           1
 S serine              6.1         11           3
 T threonine           4.4          8           1
 V valine              8.8         16           1
 W tryptophan          1.7          3           1
 Y tyrosine            3.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nudix-type motif 4 isoform beta 
NUDT4                 0.980   nudix-type motif 4 isoform alpha 
NUDT11                0.825   nudix-type motif 11 
NUDT10                0.819   nudix-type motif 10 
NUDT3                 0.655   nudix-type motif 3 
NUDT6                 0.069   nudix-type motif 6 isoform a 
NUDT6                 0.063   nudix-type motif 6 isoform b 
NUDT2                 0.040   nudix-type motif 2 
NUDT2                 0.040   nudix-type motif 2 
NUDT2                 0.040   nudix-type motif 2 
NUDT18                0.040   nudix (nucleoside diphosphate linked moiety X)-type...
DCP2                  0.040   DCP2 decapping enzyme 
NUDT17                0.032   nudix (nucleoside diphosphate linked moiety X)-type ...
NUDT5                 0.014   nudix-type motif 5 
TMEFF1                0.014   transmembrane protein with EGF-like and two follista...
FAM100B               0.011   hypothetical protein LOC283991 
TMC4                  0.011   transmembrane channel-like 4 isoform 2 
TMC4                  0.011   transmembrane channel-like 4 isoform 1 
COL27A1               0.009   collagen, type XXVII, alpha 1 
NUDT9                 0.006   nudix-type motif 9 isoform b 
NUDT9                 0.006   nudix-type motif 9 isoform a 
HYDIN                 0.006   hydrocephalus inducing isoform a 
BRD1                  0.006   bromodomain containing protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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