Guide to the Human Genome
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Name: NUDT11 Sequence: fasta or formatted (164aa) NCBI GI: 37221177
Description:

nudix-type motif 11

Referenced in:

Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          8           2
 C cysteine            2.4          4           1
 D aspartate           5.5          9           1
 E glutamate          11.6         19           3
 F phenylalanine       2.4          4           1
 G glycine             8.5         14           3
 H histidine           1.8          3           1
 I isoleucine          1.8          3           1
 K lysine              7.9         13           2
 L leucine             7.9         13           2
 M methionine          1.8          3           1
 N asparagine          2.4          4           1
 P proline             6.7         11           1
 Q glutamine           2.4          4           1
 R arginine            7.3         12           1
 S serine              6.7         11           3
 T threonine           3.7          6           1
 V valine              8.5         14           1
 W tryptophan          1.8          3           1
 Y tyrosine            3.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nudix-type motif 11 
NUDT10                0.991   nudix-type motif 10 
NUDT4                 0.903   nudix-type motif 4 isoform beta 
NUDT4                 0.884   nudix-type motif 4 isoform alpha 
NUDT3                 0.704   nudix-type motif 3 
NUDT6                 0.069   nudix-type motif 6 isoform a 
NUDT6                 0.066   nudix-type motif 6 isoform b 
NUDT18                0.047   nudix (nucleoside diphosphate linked moiety X)-type...
NUDT2                 0.044   nudix-type motif 2 
NUDT2                 0.044   nudix-type motif 2 
NUDT2                 0.044   nudix-type motif 2 
DCP2                  0.035   DCP2 decapping enzyme 
NUDT17                0.035   nudix (nucleoside diphosphate linked moiety X)-type ...
PCNXL2                0.022   pecanex-like 2 
NUDT5                 0.016   nudix-type motif 5 
TMC4                  0.009   transmembrane channel-like 4 isoform 2 
TMC4                  0.009   transmembrane channel-like 4 isoform 1 
UBN1                  0.009   ubinuclein 1 
UBN1                  0.009   ubinuclein 1 
SLC24A2               0.009   solute carrier family 24 (sodium/potassium/calcium ex...
COL27A1               0.009   collagen, type XXVII, alpha 1 
PRX                   0.006   periaxin isoform 1 
PRX                   0.006   periaxin isoform 2 
CLPTM1L               0.006   CLPTM1-like 
SIPA1L3               0.006   signal-induced proliferation-associated 1 like 3 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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