Guide to the Human Genome
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Name: SEMA5A Sequence: fasta or formatted (1074aa) NCBI GI: 147904700
Description:

semaphorin 5A

Referenced in:

Additional Genes in Development
Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         60           2
 C cysteine            5.8         62           1
 D aspartate           3.6         39           1
 E glutamate           6.0         64           2
 F phenylalanine       4.0         43           3
 G glycine             7.3         78           3
 H histidine           2.3         25           1
 I isoleucine          4.0         43           2
 K lysine              3.2         34           2
 L leucine             7.4         80           2
 M methionine          1.5         16           1
 N asparagine          5.5         59           2
 P proline             6.1         65           2
 Q glutamine           4.4         47           3
 R arginine            6.3         68           3
 S serine              8.5         91           3
 T threonine           6.7         72           2
 V valine              5.6         60           2
 W tryptophan          2.7         29           1
 Y tyrosine            3.6         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semaphorin 5A 
SEMA5B                0.590   semaphorin 5B isoform 1 
SEMA6A                0.125   sema domain, transmembrane domain (TM), and cytoplas...
SEMA6B                0.122   semaphorin 6B precursor 
SEMA6D                0.119   semaphorin 6D isoform 1 precursor 
SEMA6D                0.119   semaphorin 6D isoform 5 precursor 
SEMA6D                0.119   semaphorin 6D isoform 4 precursor 
SEMA6D                0.119   semaphorin 6D isoform 3 precursor 
SEMA6D                0.119   semaphorin 6D isoform 2 precursor 
SEMA6C                0.111   semaphorin Y 
SEMA4C                0.109   semaphorin 4C 
HMCN1                 0.109   hemicentin 1 
SEMA3A                0.106   semaphorin 3A precursor 
SEMA6D                0.104   semaphorin 6D isoform 6 precursor 
SEMA4A                0.100   semaphorin B 
SEMA3B                0.100   semaphorin 3B isoform 1 precursor 
SEMA3E                0.099   semaphorin 3E 
SEMA3C                0.098   semaphorin 3C 
SEMA4D                0.098   semaphorin 4D isoform 2 
SEMA3B                0.098   semaphorin 3B isoform 2 precursor 
SEMA3D                0.098   semaphorin 3D 
SEMA4D                0.096   semaphorin 4D isoform 1 
SEMA4B                0.095   semaphorin 4B precursor 
SEMA4B                0.095   semaphorin 4B precursor 
SEMA3F                0.094   semaphorin 3F 
SEMA4F                0.082   semaphorin W 
SEMA4G                0.076   semaphorin 4G 
SEMA3G                0.073   semaphorin sem2 
CFP                   0.069   complement factor properdin precursor 
CFP                   0.069   complement factor properdin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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