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Search of human proteins with 61744452
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo
sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo s... 518 e-147
gi|61744454 retinal G-protein coupled receptor isoform 2 [Homo s... 499 e-141
gi|21361329 retinal G-protein coupled receptor isoform 1 [Homo s... 493 e-140
gi|5730019 peropsin [Homo sapiens] 113 1e-25
gi|15150803 opsin 4 isoform 1 [Homo sapiens] 101 7e-22
gi|71999131 opsin 3 [Homo sapiens] 93 2e-19
gi|71999143 opsin 4 isoform 2 [Homo sapiens] 93 3e-19
gi|38678524 opsin 5 isoform 1 [Homo sapiens] 85 5e-17
gi|4506527 rhodopsin [Homo sapiens] 78 8e-15
gi|5174593 melatonin receptor 1A [Homo sapiens] 60 1e-09
gi|10880131 5-hydroxytryptamine receptor 7 isoform b [Homo sapiens] 60 2e-09
gi|10880129 5-hydroxytryptamine receptor 7 isoform d [Homo sapiens] 60 2e-09
gi|4504547 5-hydroxytryptamine receptor 7 isoform a [Homo sapiens] 60 2e-09
gi|9910526 opsin 1 (cone pigments), long-wave-sensitive [Homo sa... 57 1e-08
gi|4507681 thyrotropin-releasing hormone receptor [Homo sapiens] 57 2e-08
gi|114687592 opsin 1 (cone pigments), medium-wave-sensitive 2 [H... 56 3e-08
gi|4503965 opsin 1 (cone pigments), medium-wave-sensitive [Homo ... 56 3e-08
gi|4501969 adrenergic, beta-2-, receptor, surface [Homo sapiens] 55 4e-08
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 54 1e-07
gi|4557267 adrenergic, beta-3-, receptor [Homo sapiens] 54 1e-07
gi|5174595 melatonin receptor 1B [Homo sapiens] 53 2e-07
gi|7669548 tachykinin receptor 3 [Homo sapiens] 53 3e-07
gi|150170722 G protein-coupled receptor 50 [Homo sapiens] 53 3e-07
gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens] 52 4e-07
gi|4505513 opiate receptor-like 1 [Homo sapiens] 52 4e-07
gi|33286424 opiate receptor-like 1 [Homo sapiens] 52 4e-07
gi|4557857 somatostatin receptor 1 [Homo sapiens] 52 6e-07
gi|149158709 histamine receptor H1 [Homo sapiens] 50 2e-06
gi|149158706 histamine receptor H1 [Homo sapiens] 50 2e-06
gi|149158704 histamine receptor H1 [Homo sapiens] 50 2e-06
>gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo
sapiens]
Length = 253
Score = 518 bits (1333), Expect = e-147
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 60
MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
Sbjct: 1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 60
Query: 61 ADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR 120
ADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR
Sbjct: 61 ADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR 120
Query: 121 SQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTM 180
SQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTM
Sbjct: 121 SQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTM 180
Query: 181 SFFNFAMPLFITITSYSLMEQKLGKSGHLQVPALIAKMVPTINAINYALGNEMVCRGIWQ 240
SFFNFAMPLFITITSYSLMEQKLGKSGHLQVPALIAKMVPTINAINYALGNEMVCRGIWQ
Sbjct: 181 SFFNFAMPLFITITSYSLMEQKLGKSGHLQVPALIAKMVPTINAINYALGNEMVCRGIWQ 240
Query: 241 CLSPQKREKDRTK 253
CLSPQKREKDRTK
Sbjct: 241 CLSPQKREKDRTK 253
>gi|61744454 retinal G-protein coupled receptor isoform 2 [Homo
sapiens]
Length = 291
Score = 499 bits (1284), Expect = e-141
Identities = 253/291 (86%), Positives = 253/291 (86%), Gaps = 38/291 (13%)
Query: 1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 60
MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
Sbjct: 1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 60
Query: 61 ADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR 120
ADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR
Sbjct: 61 ADSGISLNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR 120
Query: 121 SQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTM 180
SQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTM
Sbjct: 121 SQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTM 180
Query: 181 SFFNFAMPLFITITSYSLMEQKLGKSGHLQ------------------------------ 210
SFFNFAMPLFITITSYSLMEQKLGKSGHLQ
Sbjct: 181 SFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVIADVT 240
Query: 211 --------VPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 253
VPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
Sbjct: 241 SISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 291
>gi|21361329 retinal G-protein coupled receptor isoform 1 [Homo
sapiens]
Length = 295
Score = 493 bits (1269), Expect = e-140
Identities = 253/295 (85%), Positives = 253/295 (85%), Gaps = 42/295 (14%)
Query: 1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 60
MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
Sbjct: 1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 60
Query: 61 ADSGISLNALVAATSSLLR----RWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH 116
ADSGISLNALVAATSSLLR RWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH
Sbjct: 61 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH 120
Query: 117 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF 176
YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF
Sbjct: 121 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF 180
Query: 177 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQ-------------------------- 210
LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQ
Sbjct: 181 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI 240
Query: 211 ------------VPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 253
VPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
Sbjct: 241 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 295
>gi|5730019 peropsin [Homo sapiens]
Length = 337
Score = 113 bits (283), Expect = 1e-25
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 4/190 (2%)
Query: 11 FGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGIS-LNA 69
F + E V L++ + + N + + F K ELRTP + ++++LA+ D G+S +
Sbjct: 20 FSQTEHNIVATYLIMAGMISIISNIIVLGIFIKYKELRTPTNAIIINLAVTDIGVSSIGY 79
Query: 70 LVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTRS---QLAWN 126
++A S L W +G GCQ + +ASI +A RY C ++ N
Sbjct: 80 PMSAASDLYGSWKFGYAGCQVYAGLNIFFGMASIGLLTVVAVDRYLTICLPDVGRRMTTN 139
Query: 127 SAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFA 186
+ + L+L W++ FWA +P++GW Y +P G CT+++ K DR+F S+ T+ NF
Sbjct: 140 TYIGLILGAWINGLFWALMPIIGWASYAPDPTGATCTINWRKNDRSFVSYTMTVIAINFI 199
Query: 187 MPLFITITSY 196
+PL + Y
Sbjct: 200 VPLTVMFYCY 209
>gi|15150803 opsin 4 isoform 1 [Homo sapiens]
Length = 478
Score = 101 bits (251), Expect = 7e-22
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 5/194 (2%)
Query: 19 VGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLN-ALVAATSSL 77
+G V+L+ L+G+ N I++FC++ LRTP ++ +++LA++D +S A V TSSL
Sbjct: 73 LGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSL 132
Query: 78 LRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY----HHYCTRSQLAWNSAVSLVL 133
++W +G GC+ + F G + ++S+ + AIA RY T + A ++L
Sbjct: 133 YKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLL 192
Query: 134 FVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITI 193
VWL + W+ P GW Y E L T C+ DY ++ + F F +PL I I
Sbjct: 193 GVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIII 252
Query: 194 TSYSLMEQKLGKSG 207
Y + + + ++G
Sbjct: 253 YCYIFIFRAIRETG 266
>gi|71999131 opsin 3 [Homo sapiens]
Length = 402
Score = 93.2 bits (230), Expect = 2e-19
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 28 LSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAATSSLLRR-WPYGSD 86
L G+ N L + + K LRTP HLL+++++L+D +SL + S LR W + +
Sbjct: 53 LLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNGWVWDTV 112
Query: 87 GCQAHGFQGFVTALASICSSAAIAWGRYHHYCTRSQLAWNSAVSLVLFVWLSSAFWAALP 146
GC GF G + + SI + +A+ RY + ++ A + ++WL S WA P
Sbjct: 113 GCVWDGFSGSLFGIVSIATLTVLAYERYIRVVHARVINFSWAWRAITYIWLYSLAWAGAP 172
Query: 147 LLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSY 196
LLGW Y + G CT+D+ D N +SF+ + +PL + Y
Sbjct: 173 LLGWNRYILDVHGLGCTVDWKSKDANDSSFVLFLFLGCLVVPLGVIAHCY 222
>gi|71999143 opsin 4 isoform 2 [Homo sapiens]
Length = 489
Score = 92.8 bits (229), Expect = 3e-19
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 19 VGMVLLVEALSGLSLNTLTIFSFCK-----------TPELRTPCHLLVLSLALADSGISL 67
+G V+L+ L+G+ N I++FC+ + LRTP ++ +++LA++D +S
Sbjct: 73 LGTVILLVGLTGMLGNLTVIYTFCRAVLRGVTVMMQSRSLRTPANMFIINLAVSDFLMSF 132
Query: 68 N-ALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY----HHYCTRSQ 122
A V TSSL ++W +G GC+ + F G + ++S+ + AIA RY T
Sbjct: 133 TQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGV 192
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSF 182
+ A ++L VWL + W+ P GW Y E L T C+ DY ++ +
Sbjct: 193 ASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCC 252
Query: 183 FNFAMPLFITITSYSLMEQKLGKSG 207
F F +PL I I Y + + + ++G
Sbjct: 253 FVFFLPLLIIIYCYIFIFRAIRETG 277
>gi|38678524 opsin 5 isoform 1 [Homo sapiens]
Length = 354
Score = 85.1 bits (209), Expect = 5e-17
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 6/196 (3%)
Query: 17 LAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISL-NALVAATS 75
L G L + + N ++ + + P ++ ++LA+ D GIS+ S
Sbjct: 34 LVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVGKPFTIIS 93
Query: 76 SLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTRSQLAW---NSAVSLV 132
RW +G GC+ +G+ GF S+ + A++ RY C S W A +
Sbjct: 94 CFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICL 153
Query: 133 LFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDY--SKGDRNFTSFLFTMSFFNFAMPLF 190
+W ++FW +PL+G G Y EP GT CTLD+ ++ F+ + FF +P
Sbjct: 154 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA 213
Query: 191 ITITSYSLMEQKLGKS 206
+ + SY + K+ S
Sbjct: 214 VIVFSYVKIIAKVKSS 229
>gi|4506527 rhodopsin [Homo sapiens]
Length = 348
Score = 77.8 bits (190), Expect = 8e-15
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Query: 13 ELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVA 72
+ +LA M LL+ + G +N LT++ + +LRTP + ++L+LA+AD + L +
Sbjct: 36 QFSMLAAYMFLLI--VLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTS 93
Query: 73 AT-SSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC---TRSQLAWNSA 128
+SL + +G GC GF + ++ S +A RY C + + N A
Sbjct: 94 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 153
Query: 129 VSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDY--SKGDRNFTSFLFTMSFFNFA 186
+ V F W+ + AA PL GW Y E L C +DY K + N SF+ M +F
Sbjct: 154 IMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFT 213
Query: 187 MPLFITITSY 196
+P+ I Y
Sbjct: 214 IPMIIIFFCY 223
>gi|5174593 melatonin receptor 1A [Homo sapiens]
Length = 350
Score = 60.5 bits (145), Expect = 1e-09
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 10/184 (5%)
Query: 18 AVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAATSSL 77
A+ VL+ + + N L I S + +LR ++ V+SLA+AD +++ S+
Sbjct: 29 ALACVLIFTIVVDILGNLLVILSVYRNKKLRNAGNIFVVSLAVADLVVAIYPYPLVLMSI 88
Query: 78 LRR-WPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC--TRSQLAWNSAVSL--V 132
W G CQ GF ++ + SI + IA RY + C + ++S SL V
Sbjct: 89 FNNGWNLGYLHCQVSGFLMGLSVIGSIFNITGIAINRYCYICHSLKYDKLYSSKNSLCYV 148
Query: 133 LFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFIT 192
L +WL + A LP L G Y+P CT S +++ + F+F +P+ I
Sbjct: 149 LLIWLLT-LAAVLPNLRAGTLQYDPRIYSCTFAQSVS----SAYTIAVVVFHFLVPMIIV 203
Query: 193 ITSY 196
I Y
Sbjct: 204 IFCY 207
>gi|10880131 5-hydroxytryptamine receptor 7 isoform b [Homo sapiens]
Length = 432
Score = 59.7 bits (143), Expect = 2e-09
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 11 FGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNAL 70
+G +E + +G +L + L ++ N L + S C +LR P + L++SLALAD +++ +
Sbjct: 76 YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAVM 135
Query: 71 --VAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY------HHYCTRSQ 122
V+ T + +W +G C + ASI + I+ RY Y R
Sbjct: 136 PFVSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQN 195
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGW 150
++L VWL SA PL GW
Sbjct: 196 --GKCMAKMILSVWLLSASITLPPLFGW 221
>gi|10880129 5-hydroxytryptamine receptor 7 isoform d [Homo sapiens]
Length = 479
Score = 59.7 bits (143), Expect = 2e-09
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 11 FGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNAL 70
+G +E + +G +L + L ++ N L + S C +LR P + L++SLALAD +++ +
Sbjct: 76 YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAVM 135
Query: 71 --VAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY------HHYCTRSQ 122
V+ T + +W +G C + ASI + I+ RY Y R
Sbjct: 136 PFVSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQN 195
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGW 150
++L VWL SA PL GW
Sbjct: 196 --GKCMAKMILSVWLLSASITLPPLFGW 221
>gi|4504547 5-hydroxytryptamine receptor 7 isoform a [Homo sapiens]
Length = 445
Score = 59.7 bits (143), Expect = 2e-09
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 11 FGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNAL 70
+G +E + +G +L + L ++ N L + S C +LR P + L++SLALAD +++ +
Sbjct: 76 YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAVM 135
Query: 71 --VAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY------HHYCTRSQ 122
V+ T + +W +G C + ASI + I+ RY Y R
Sbjct: 136 PFVSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQN 195
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGW 150
++L VWL SA PL GW
Sbjct: 196 --GKCMAKMILSVWLLSASITLPPLFGW 221
>gi|9910526 opsin 1 (cone pigments), long-wave-sensitive [Homo
sapiens]
Length = 364
Score = 57.4 bits (137), Expect = 1e-08
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 18 AVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAATSSL 77
+V M+ +V A + N L + + K +LR P + ++++LA+AD ++A+T S+
Sbjct: 57 SVWMIFVVTA--SVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLA---ETVIASTISI 111
Query: 78 LRR----WPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR-SQLAWNSAVSLV 132
+ + + G C G+ + + + S A I+W R+ C + +++ +++V
Sbjct: 112 VNQVSGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAKLAIV 171
Query: 133 --LFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDR--NFTSFLFTMSFFNFAMP 188
F W+ SA W A P+ GW Y L T C D G S++ + +P
Sbjct: 172 GIAFSWIWSAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIP 231
Query: 189 LFITITSY 196
L I + Y
Sbjct: 232 LAIIMLCY 239
>gi|4507681 thyrotropin-releasing hormone receptor [Homo sapiens]
Length = 398
Score = 57.0 bits (136), Expect = 2e-08
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 23/205 (11%)
Query: 13 ELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVA 72
E +V+ + +VL++ L G+ N + + +T +RTP + ++SLA+AD L LVA
Sbjct: 23 EYQVVTILLVLIICGL-GIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVAD----LMVLVA 77
Query: 73 A-----TSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC----TRSQL 123
A T S+ W YG GC + ++ AS CS A RY C +
Sbjct: 78 AGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLC 137
Query: 124 AWNSAVSLVLFVW----LSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFT 179
++ A +++FVW L W L L Y + +C K RN+ S ++
Sbjct: 138 TFSRAKKIIIFVWAFTSLYCMLWFFLLDLNISTYKDAIVISC----GYKISRNYYSPIYL 193
Query: 180 MSFFNF-AMPLFITITSYSLMEQKL 203
M F F +P+ + Y + + L
Sbjct: 194 MDFGVFYVVPMILATVLYGFIARIL 218
>gi|114687592 opsin 1 (cone pigments), medium-wave-sensitive 2 [Homo
sapiens]
Length = 364
Score = 56.2 bits (134), Expect = 3e-08
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 18 AVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAATSSL 77
+V M+ +V ++ + N L + + K +LR P + ++++LA+AD ++A+T S+
Sbjct: 57 SVWMIFVV--IASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLA---ETVIASTISV 111
Query: 78 LRR----WPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR-SQLAWNSAVSLV 132
+ + + G C G+ + + + S A I+W R+ C + +++ +++V
Sbjct: 112 VNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIV 171
Query: 133 --LFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDR--NFTSFLFTMSFFNFAMP 188
F W+ +A W A P+ GW Y L T C D G S++ + P
Sbjct: 172 GIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITP 231
Query: 189 LFITITSY 196
L I + Y
Sbjct: 232 LSIIVLCY 239
>gi|4503965 opsin 1 (cone pigments), medium-wave-sensitive [Homo
sapiens]
Length = 364
Score = 56.2 bits (134), Expect = 3e-08
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 18 AVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAATSSL 77
+V M+ +V ++ + N L + + K +LR P + ++++LA+AD ++A+T S+
Sbjct: 57 SVWMIFVV--IASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLA---ETVIASTISV 111
Query: 78 LRR----WPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR-SQLAWNSAVSLV 132
+ + + G C G+ + + + S A I+W R+ C + +++ +++V
Sbjct: 112 VNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIV 171
Query: 133 --LFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDR--NFTSFLFTMSFFNFAMP 188
F W+ +A W A P+ GW Y L T C D G S++ + P
Sbjct: 172 GIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITP 231
Query: 189 LFITITSY 196
L I + Y
Sbjct: 232 LSIIVLCY 239
>gi|4501969 adrenergic, beta-2-, receptor, surface [Homo sapiens]
Length = 413
Score = 55.5 bits (132), Expect = 4e-08
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)
Query: 13 ELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNAL-V 71
E+ V+ +G+V+ + L+ + N L I + K L+T + + SLA AD + L +
Sbjct: 30 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 89
Query: 72 AATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCT----RSQLAWNS 127
A L++ W +G+ C+ + ASI + IA RY + +S L N
Sbjct: 90 GAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNK 149
Query: 128 AVSLVLFVWLSSAFWAALPL-LGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFA 186
A ++L VW+ S + LP+ + W ++ C + ++ S +F
Sbjct: 150 ARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFY 209
Query: 187 MPLFITITSYSLMEQK 202
+PL I + YS + Q+
Sbjct: 210 VPLVIMVFVYSRVFQE 225
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 54.3 bits (129), Expect = 1e-07
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 5 SALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSG 64
S P + +G+++ + L ++ N L I + KTP L+T +L ++SLA AD
Sbjct: 47 SESPEPLSQQWTAGMGLLMALIVLLIVAGNVLVIVAIAKTPRLQTLTNLFIMSLASADLV 106
Query: 65 ISLNAL-VAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY----HHYCT 119
+ L + AT + RW YGS C+ + ASI + IA RY +
Sbjct: 107 MGLLVVPFGATIVVWGRWEYGSFFCELWTSVDVLCVTASIETLCVIALDRYLAITSPFRY 166
Query: 120 RSQLAWNSAVSLVLFVWLSSAFWAALPLL 148
+S L A LV VW SA + LP+L
Sbjct: 167 QSLLTRARARGLVCTVWAISALVSFLPIL 195
>gi|4557267 adrenergic, beta-3-, receptor [Homo sapiens]
Length = 408
Score = 53.9 bits (128), Expect = 1e-07
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 2 AETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALA 61
A TS LP E G +L + L+ + N L I + TP L+T ++ V SLA A
Sbjct: 25 ANTSGLPGV--PWEAALAGALLALAVLATVGGNLLVIVAIAWTPRLQTMTNVFVTSLAAA 82
Query: 62 DSGISLNAL-VAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTR 120
D + L + AAT +L WP G+ GC+ + ASI + A+A RY
Sbjct: 83 DLVMGLLVVPPAATLALTGHWPLGATGCELWTSVDVLCVTASIETLCALAVDRY--LAVT 140
Query: 121 SQLAWNSAV------SLVLFVWLSSAFWAALPLL 148
+ L + + V + V+ VW+ SA + P++
Sbjct: 141 NPLRYGALVTKRCARTAVVLVWVVSAAVSFAPIM 174
>gi|5174595 melatonin receptor 1B [Homo sapiens]
Length = 362
Score = 53.1 bits (126), Expect = 2e-07
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 12/185 (6%)
Query: 18 AVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNAL-VAATSS 76
A+ VL+V + N L I S + +LR +L ++SLALAD ++ + +
Sbjct: 42 ALSAVLIVTTAVDVVGNLLVILSVLRNRKLRNAGNLFLVSLALADLVVAFYPYPLILVAI 101
Query: 77 LLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC-----TRSQLAWNSAVSL 131
W G + C+A F ++ + S+ + AIA RY + C R W++ + +
Sbjct: 102 FYDGWALGEEHCKASAFVMGLSVIGSVFNITAIAINRYCYICHSMAYHRIYRRWHTPLHI 161
Query: 132 VLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFI 191
L +WL + A LP G +Y+P CT + T + + +F +P+ +
Sbjct: 162 CL-IWLLTVV-ALLPNFFVGSLEYDPRIYSCTFIQTAS----TQYTAAVVVIHFLLPIAV 215
Query: 192 TITSY 196
Y
Sbjct: 216 VSFCY 220
>gi|7669548 tachykinin receptor 3 [Homo sapiens]
Length = 465
Score = 52.8 bits (125), Expect = 3e-07
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 8/186 (4%)
Query: 17 LAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGIS-LNALVAATS 75
LA G+V+ V L N + I+ +RT + +++LA +D+ ++ N LV
Sbjct: 90 LAYGVVVAVAVLG----NLIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFNTLVNFIY 145
Query: 76 SLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC--TRSQLAWNSAVSLVL 133
+L W +G++ C+ F ASI S AIA RY + +L+ + ++
Sbjct: 146 ALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIG 205
Query: 134 FVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITI 193
+W+ AF A P + P T C + + +G + ++ + + PL I
Sbjct: 206 SIWI-LAFLLAFPQCLYSKTKVMPGRTLCFVQWPEGPKQHFTYHIIVIILVYCFPLLIMG 264
Query: 194 TSYSLM 199
+Y+++
Sbjct: 265 ITYTIV 270
>gi|150170722 G protein-coupled receptor 50 [Homo sapiens]
Length = 617
Score = 52.8 bits (125), Expect = 3e-07
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 24/209 (11%)
Query: 1 MAETSALPTGFGELE------------VLAVGMVLLVEALSGLSLNTLTIFSFCKTPELR 48
M T A+PT +G + ++ + +++ + L N++ I + K +LR
Sbjct: 1 MGPTLAVPTPYGCIGCKLPQPEYPPALIIFMFCAMVITIVVDLIGNSMVILAVTKNKKLR 60
Query: 49 TPCHLLVLSLALADSGISLNALVAATSSL-LRRWPYGSDGCQAHGFQGFVTALASICSSA 107
++ V+SL++AD +++ ++ + W CQ GF ++ + SI +
Sbjct: 61 NSGNIFVVSLSVADMLVAIYPYPLMLHAMSIGGWDLSQLQCQMVGFITGLSVVGSIFNIV 120
Query: 108 AIAWGRYHHYCTRSQL-----AWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCC 162
AIA RY + C Q N+ + LV+ W+ + A LP + G +Y+P C
Sbjct: 121 AIAINRYCYICHSLQYERIFSVRNTCIYLVI-TWIMTVL-AVLPNMYIGTIEYDPRTYTC 178
Query: 163 TLDYSKGDRNFTSFLFTMSFFNFAMPLFI 191
+Y N F T+ +F +PL I
Sbjct: 179 IFNY----LNNPVFTVTIVCIHFVLPLLI 203
>gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens]
Length = 520
Score = 52.4 bits (124), Expect = 4e-07
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 17 LAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNAL-VAATS 75
++VG+VL L + N L I S LRTP + +++LA+AD +S L +A
Sbjct: 46 ISVGLVLGAFILFAIVGNILVILSVACNRHLRTPTNYFIVNLAMADLLLSFTVLPFSAAL 105
Query: 76 SLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY----HHYCTRSQLAWNSAVSL 131
+L W G C + ASI S AI+ RY + + + A+
Sbjct: 106 EVLGYWVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILA 165
Query: 132 VLFVWLSSAFWAALPLLGW 150
+L VW+ S + PLLGW
Sbjct: 166 LLSVWVLSTVISIGPLLGW 184
>gi|4505513 opiate receptor-like 1 [Homo sapiens]
Length = 370
Score = 52.4 bits (124), Expect = 4e-07
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 7 LPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGIS 66
LP G L+V VG+ L V + GL N L ++ + +++T ++ + +LALAD+ +
Sbjct: 46 LPLG---LKVTIVGLYLAV-CVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVL 101
Query: 67 LNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC----TRSQ 122
L T LL WP+G+ C+ + S + A++ RY C
Sbjct: 102 LTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDV 161
Query: 123 LAWNSAVSLVLFVW-LSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMS 181
+ A ++ + +W L+S + ++G + E + C + D F +
Sbjct: 162 RTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEI-ECLVEIPTPQDYWGPVFAICIF 220
Query: 182 FFNFAMPLFITITSYSLMEQKL 203
F+F +P+ + YSLM ++L
Sbjct: 221 LFSFIVPVLVISVCYSLMIRRL 242
>gi|33286424 opiate receptor-like 1 [Homo sapiens]
Length = 370
Score = 52.4 bits (124), Expect = 4e-07
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 7 LPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGIS 66
LP G L+V VG+ L V + GL N L ++ + +++T ++ + +LALAD+ +
Sbjct: 46 LPLG---LKVTIVGLYLAV-CVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVL 101
Query: 67 LNALVAATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYC----TRSQ 122
L T LL WP+G+ C+ + S + A++ RY C
Sbjct: 102 LTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDV 161
Query: 123 LAWNSAVSLVLFVW-LSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMS 181
+ A ++ + +W L+S + ++G + E + C + D F +
Sbjct: 162 RTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEI-ECLVEIPTPQDYWGPVFAICIF 220
Query: 182 FFNFAMPLFITITSYSLMEQKL 203
F+F +P+ + YSLM ++L
Sbjct: 221 LFSFIVPVLVISVCYSLMIRRL 242
>gi|4557857 somatostatin receptor 1 [Homo sapiens]
Length = 391
Score = 51.6 bits (122), Expect = 6e-07
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Query: 12 GELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALV 71
G+ + + + V L GL N++ I+ + +++T ++ +L+LA+AD + L+
Sbjct: 54 GQGSAILISFIYSVVCLVGLCGNSMVIYVILRYAKMKTATNIYILNLAIADELLMLSVPF 113
Query: 72 AATSSLLRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRY---HHYCTRSQLAWNSA 128
TS+LLR WP+G+ C+ V SI ++ RY H ++ +
Sbjct: 114 LVTSTLLRHWPFGALLCRLVLSVDAVNMFTSIYCLTVLSVDRYVAVVHPIKAARYRRPTV 173
Query: 129 VSLV-LFVWLSSAFWAALPLLGWGHYDYEPLGT--CCTLDYSKGDRNFTSFLFTMSFFNF 185
+V L VW+ S LP++ + GT C L R F+ F
Sbjct: 174 AKVVNLGVWVLSLL-VILPIVVFSRTAANSDGTVACNMLMPEPAQRWLVGFVLYTFLMGF 232
Query: 186 AMPLFITITSYSLMEQKL 203
+P+ Y L+ K+
Sbjct: 233 LLPVGAICLCYVLIIAKM 250
>gi|149158709 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 49.7 bits (117), Expect = 2e-06
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 15 EVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAAT 74
+++ + +VL L + LN L +++ +L T +L ++SL++AD + + A+V
Sbjct: 26 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVAD--LIVGAVVMPM 83
Query: 75 SSL---LRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH---------YCTRSQ 122
+ L + +W G C +V + ASI S + RY Y T+++
Sbjct: 84 NILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTR 143
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEP---LGTCCTLDYSKGDRNFTSFLFT 179
A + +L W S W +P+LGW H+ + C D+ + T F
Sbjct: 144 -----ASATILGAWFLSFLWV-IPILGWNHFMQQTSVRREDKCETDF----YDVTWFKVM 193
Query: 180 MSFFNFAMPLFITITSYSLMEQKLGKSGHLQVPALIAKMVPTINAI 225
+ NF +P + + Y+ + + + + H Q LI + +P+ + I
Sbjct: 194 TAIINFYLPTLLMLWFYAKIYKAVRQ--HCQHRELINRSLPSFSEI 237
>gi|149158706 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 49.7 bits (117), Expect = 2e-06
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 15 EVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAAT 74
+++ + +VL L + LN L +++ +L T +L ++SL++AD + + A+V
Sbjct: 26 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVAD--LIVGAVVMPM 83
Query: 75 SSL---LRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH---------YCTRSQ 122
+ L + +W G C +V + ASI S + RY Y T+++
Sbjct: 84 NILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTR 143
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEP---LGTCCTLDYSKGDRNFTSFLFT 179
A + +L W S W +P+LGW H+ + C D+ + T F
Sbjct: 144 -----ASATILGAWFLSFLWV-IPILGWNHFMQQTSVRREDKCETDF----YDVTWFKVM 193
Query: 180 MSFFNFAMPLFITITSYSLMEQKLGKSGHLQVPALIAKMVPTINAI 225
+ NF +P + + Y+ + + + + H Q LI + +P+ + I
Sbjct: 194 TAIINFYLPTLLMLWFYAKIYKAVRQ--HCQHRELINRSLPSFSEI 237
>gi|149158704 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 49.7 bits (117), Expect = 2e-06
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 15 EVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAAT 74
+++ + +VL L + LN L +++ +L T +L ++SL++AD + + A+V
Sbjct: 26 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVAD--LIVGAVVMPM 83
Query: 75 SSL---LRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH---------YCTRSQ 122
+ L + +W G C +V + ASI S + RY Y T+++
Sbjct: 84 NILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTR 143
Query: 123 LAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEP---LGTCCTLDYSKGDRNFTSFLFT 179
A + +L W S W +P+LGW H+ + C D+ + T F
Sbjct: 144 -----ASATILGAWFLSFLWV-IPILGWNHFMQQTSVRREDKCETDF----YDVTWFKVM 193
Query: 180 MSFFNFAMPLFITITSYSLMEQKLGKSGHLQVPALIAKMVPTINAI 225
+ NF +P + + Y+ + + + + H Q LI + +P+ + I
Sbjct: 194 TAIINFYLPTLLMLWFYAKIYKAVRQ--HCQHRELINRSLPSFSEI 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,125,185
Number of Sequences: 37866
Number of extensions: 355539
Number of successful extensions: 1356
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 269
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.