Guide to the Human Genome
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Name: LOC100293468 Sequence: fasta or formatted (116aa) NCBI GI: 239758027
Description:

PREDICTED: similar to LIM and senescent cell antigen-like domains 1

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0          7           1
 C cysteine            7.8          9           1
 D aspartate           5.2          6           1
 E glutamate           4.3          5           1
 F phenylalanine       5.2          6           1
 G glycine             6.9          8           1
 H histidine           6.0          7           1
 I isoleucine          7.8          9           2
 K lysine              6.9          8           2
 L leucine            11.2         13           2
 M methionine          1.7          2           1
 N asparagine          6.0          7           2
 P proline             6.9          8           1
 Q glutamine           3.4          4           1
 R arginine            6.9          8           1
 S serine              0.9          1           1
 T threonine           0.0          0           0
 V valine              2.6          3           1
 W tryptophan          2.6          3           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to LIM and senescent cell antige... 
LOC100288695          0.772   PREDICTED: hypothetical protein XP_002342298 
LIMS1                 0.772   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.654   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.654   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.654   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.654   LIM and senescent cell antigen-like domains 2 isofor...
PXN                   0.148   paxillin isoform 3 
PXN                   0.148   paxillin isoform 2 
PXN                   0.148   paxillin isoform 1 
LPXN                  0.148   leupaxin isoform 1 
LPXN                  0.148   leupaxin isoform 2 
FBLIM1                0.135   filamin-binding LIM protein-1 isoform c 
FBLIM1                0.135   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.135   filamin-binding LIM protein-1 isoform a 
FHL1                  0.122   four and a half LIM domains 1 isoform 4 
FHL1                  0.122   four and a half LIM domains 1 isoform 2 
FHL1                  0.122   four and a half LIM domains 1 isoform 1 
FHL1                  0.122   four and a half LIM domains 1 isoform 2 
FHL1                  0.122   four and a half LIM domains 1 isoform 3 
FHL1                  0.122   four and a half LIM domains 1 isoform 5 
FHL1                  0.122   four and a half LIM domains 1 isoform 2 
FHL3                  0.122   four and a half LIM domains 3 
TGFB1I1               0.122   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.122   transforming growth factor beta 1 induced transcript...
LDB3                  0.114   LIM domain binding 3 isoform 2 
LDB3                  0.114   LIM domain binding 3 isoform 1 
FHL2                  0.114   four and a half LIM domains 2 
FHL2                  0.114   four and a half LIM domains 2 
FHL2                  0.114   four and a half LIM domains 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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