Guide to the Human Genome
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Name: ZMYND17 Sequence: fasta or formatted (460aa) NCBI GI: 67782303
Description:

zinc finger, MYND domain containing 17

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         21           2
 C cysteine            2.2         10           1
 D aspartate           5.9         27           2
 E glutamate           4.3         20           2
 F phenylalanine       3.9         18           2
 G glycine             7.4         34           2
 H histidine           3.7         17           2
 I isoleucine          2.8         13           2
 K lysine              3.3         15           2
 L leucine            12.0         55           4
 M methionine          2.6         12           1
 N asparagine          1.3          6           1
 P proline             8.3         38           2
 Q glutamine           3.9         18           1
 R arginine            6.1         28           4
 S serine              8.5         39           2
 T threonine           6.1         28           2
 V valine              8.5         39           2
 W tryptophan          2.0          9           1
 Y tyrosine            2.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, MYND domain containing 17 
SMYD2                 0.026   SET and MYND domain containing 2 
ZMYND19               0.023   zinc finger, MYND domain containing 19 
USP19                 0.020   ubiquitin thioesterase 19 
TDRD1                 0.018   tudor domain containing 1 
ZMYND15               0.017   zinc finger, MYND-type containing 15 isoform 2 [Homo...
EGLN1                 0.017   egl nine homolog 1 
ZMYND15               0.017   zinc finger, MYND-type containing 15 isoform 1 [Hom...
SMYD3                 0.016   SET and MYND domain containing 3 
ZMYND10               0.016   zinc finger, MYND domain-containing 10 
CBFA2T3               0.016   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T3               0.016   myeloid translocation gene on chromosome 16 isoform ...
ANKMY2                0.016   ankyrin repeat and MYND domain containing 2 
DEAF1                 0.014   deformed epidermal autoregulatory factor 1 
RUNX1T1               0.014   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.014   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.014   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.014   acute myelogenous leukemia 1 translocation 1 protein ...
LOC100294411          0.014   PREDICTED: similar to deformed epidermal autoregula...
CBFA2T2               0.012   core-binding factor, runt domain, alpha subunit 2; t...
CBFA2T2               0.012   core-binding factor, runt domain, alpha subunit 2; t...
CBFA2T2               0.012   core-binding factor, runt domain, alpha subunit 2; tr...
ZMYND12               0.012   zinc finger, MYND-type containing 12 isoform 1 [Hom...
LOC389813             0.012   similar to CG15216-PA 
SMYD1                 0.010   SET and MYND domain containing 1 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform b 
PRG4                  0.009   proteoglycan 4 isoform D 
PRG4                  0.009   proteoglycan 4 isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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