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Search of human proteins with 61676093
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61676093 cyclin C isoform b [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61676093 cyclin C isoform b [Homo sapiens] 409 e-115
gi|61676091 cyclin C isoform a [Homo sapiens] 409 e-115
gi|88758580 cyclin L2 isoform A [Homo sapiens] 62 4e-10
gi|9945320 cyclin L1 [Homo sapiens] 60 2e-09
gi|150417989 cyclin K isoform 1 [Homo sapiens] 59 2e-09
gi|38176158 cyclin K isoform 2 [Homo sapiens] 59 2e-09
gi|17978466 cyclin T1 [Homo sapiens] 47 1e-05
gi|4502623 cyclin H [Homo sapiens] 46 2e-05
gi|17978469 cyclin T2 isoform b [Homo sapiens] 46 2e-05
gi|4502629 cyclin T2 isoform a [Homo sapiens] 46 2e-05
gi|196049382 family with sequence similarity 58, member A isofor... 43 2e-04
gi|196049384 family with sequence similarity 58, member A isofor... 42 4e-04
gi|157502165 family with sequence similarity 58 member B [Homo s... 38 0.006
gi|210031154 zinc finger protein 541 [Homo sapiens] 31 0.60
gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo sapi... 30 1.8
gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 29 2.3
gi|221554518 cyclin L2 isoform D [Homo sapiens] 29 3.0
gi|221554516 cyclin L2 isoform C [Homo sapiens] 29 3.0
gi|88758578 cyclin L2 isoform B [Homo sapiens] 29 3.0
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 29 3.0
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 28 3.9
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 28 3.9
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 28 6.7
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 27 8.7
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 27 8.7
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 27 8.7
gi|156119615 myosin IXA [Homo sapiens] 27 8.7
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 27 8.7
gi|116089333 kelch domain containing 7A [Homo sapiens] 27 8.7
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 27 8.7
>gi|61676093 cyclin C isoform b [Homo sapiens]
Length = 198
Score = 409 bits (1051), Expect = e-115
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60
MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL
Sbjct: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60
Query: 61 MDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA 120
MDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA
Sbjct: 61 MDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA 120
Query: 121 CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPN 180
CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPN
Sbjct: 121 CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPN 180
Query: 181 SEGEQGPNGSQNSSYSQS 198
SEGEQGPNGSQNSSYSQS
Sbjct: 181 SEGEQGPNGSQNSSYSQS 198
>gi|61676091 cyclin C isoform a [Homo sapiens]
Length = 283
Score = 409 bits (1051), Expect = e-115
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60
MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL
Sbjct: 86 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 145
Query: 61 MDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA 120
MDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA
Sbjct: 146 MDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA 205
Query: 121 CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPN 180
CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPN
Sbjct: 206 CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPN 265
Query: 181 SEGEQGPNGSQNSSYSQS 198
SEGEQGPNGSQNSSYSQS
Sbjct: 266 SEGEQGPNGSQNSSYSQS 283
>gi|88758580 cyclin L2 isoform A [Homo sapiens]
Length = 520
Score = 61.6 bits (148), Expect = 4e-10
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 5 CVFLASKVEEFGVVSNTRLIAAATSVL---------KTRFSYAFPKEFPYRMNHILECEF 55
CV LASK+EE R I +V K +++ N I++ E
Sbjct: 127 CVHLASKIEEA-----PRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAER 181
Query: 56 YLLELMDCCLIVYHPYRPLLQYVQ--DMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIA 113
+L+ + C+ V HP++ ++ Y+Q + + L+ +W +ND+ RTD+ + + P IA
Sbjct: 182 RVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLRTDVFVRFQPESIA 241
Query: 114 LACLHVAC---VVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWK 157
AC+++A + + WF E+I EI IL+LY + K
Sbjct: 242 CACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKILQLYARKK 288
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 59.7 bits (143), Expect = 2e-09
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 1 MAPTCVFLASKVEE--------FGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILE 52
+A C+ LASK+EE V + R + +T + + N +++
Sbjct: 128 VAMACINLASKIEEAPRRIRDVINVFHHLRQLRGK----RTPSPLILDQNYINTKNQVIK 183
Query: 53 CEFYLLELMDCCLIVYHPYRPLLQYVQ--DMGQEDMLLPLAWRIVNDTYRTDLCLLYPPF 110
E +L+ + C+ V HP++ ++ Y+Q + + L+ AW +ND+ RT++ + + P
Sbjct: 184 AERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPE 243
Query: 111 MIALACLHVACVVQQ---KDARQWFAELSVDMEKILEIIRVILKLYEQWK 157
IA AC+++A Q WF E+I EI L+LY + K
Sbjct: 244 TIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKK 293
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 59.3 bits (142), Expect = 2e-09
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 5 CVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF---PKEFPYRMNHILECEFYLLELM 61
C+FLA KVEE +I A S+L F PKE ++ E LL+ +
Sbjct: 99 CLFLAGKVEETPKKCKD-IIKTARSLLNDVQFGQFGDDPKE------EVMVLERILLQTI 151
Query: 62 DCCLIVYHPYRPLLQYVQ----DMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACL 117
L V HPY+ LL+Y + D + L+ +AW VND+ T L L + P +IA+A +
Sbjct: 152 KFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVM 211
Query: 118 HVACVVQQKDARQWFAE-----------LSVDMEKILEIIRVILKLYEQWKNFDERKEMA 166
++A + + + ++W ++ V ++ + +I IL LY Q K
Sbjct: 212 YLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ-QMPHHTP 270
Query: 167 TILSKMPKPKPPPNSEGEQGPNGSQNSSYSQ 197
L + P +P P Q SQ+S SQ
Sbjct: 271 HQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQ 301
>gi|38176158 cyclin K isoform 2 [Homo sapiens]
Length = 354
Score = 59.3 bits (142), Expect = 2e-09
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 5 CVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF---PKEFPYRMNHILECEFYLLELM 61
C+FLA KVEE +I A S+L F PKE ++ E LL+ +
Sbjct: 99 CLFLAGKVEETPKKCKD-IIKTARSLLNDVQFGQFGDDPKE------EVMVLERILLQTI 151
Query: 62 DCCLIVYHPYRPLLQYVQ----DMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACL 117
L V HPY+ LL+Y + D + L+ +AW VND+ T L L + P +IA+A +
Sbjct: 152 KFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVM 211
Query: 118 HVACVVQQKDARQWFAE-----------LSVDMEKILEIIRVILKLYEQWKNFDERKEMA 166
++A + + + ++W ++ V ++ + +I IL LY Q K
Sbjct: 212 YLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ-QMPHHTP 270
Query: 167 TILSKMPKPKPPPNSEGEQGPNGSQNSSYSQ 197
L + P +P P Q SQ+S SQ
Sbjct: 271 HQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQ 301
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 46.6 bits (109), Expect = 1e-05
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPY--RMNHILECEFYLL 58
+AP +FLA+KVEE +I A + L + S + Y ++ ++ E +L
Sbjct: 83 VAPAALFLAAKVEE-QPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141
Query: 59 ELMDCCLIVYHPYRPLLQYVQDM-GQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACL 117
+ + L + HP+ +++ Q + +D+ + N + T L Y P ++A C+
Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201
Query: 118 HVAC------VVQQKDARQW--FAELSVDMEKILEIIRVILKLYEQWKN 158
H+AC + D + W + + +V +E + E+ L++ E+ N
Sbjct: 202 HLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPN 250
>gi|4502623 cyclin H [Homo sapiens]
Length = 323
Score = 46.2 bits (108), Expect = 2e-05
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 4 TCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDC 63
TC FLA KV+EF V S + S L + + ILE E L++ ++
Sbjct: 107 TCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA----------LEQILEYELLLIQQLNF 156
Query: 64 CLIVYHPYRPLLQYVQD-------MGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALAC 116
LIV++PYRP ++ D + ++L A +N TD LLY P IAL
Sbjct: 157 HLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTA 216
Query: 117 L 117
+
Sbjct: 217 I 217
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 45.8 bits (107), Expect = 2e-05
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKE---------FPYRMNHIL 51
++ T +FLA+KVEE V+K + P E + + ++
Sbjct: 82 ISSTALFLAAKVEEQA--------RKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTQELV 133
Query: 52 ECEFYLLELMDCCLIVYHPYRPLLQYVQDM-GQEDMLLPLAWRIVNDTYRTDLCLLYPPF 110
E +L+ + + + HP+ +++ Q + +D+ + N + T CL Y P
Sbjct: 134 ILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPT 193
Query: 111 MIALACLHVAC------VVQQKDARQW--FAELSVDMEKILEIIRVILKLYEQWKN 158
+IA C+H+AC + D + W + + +V +E + E+ L++ E+ N
Sbjct: 194 VIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPN 249
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 45.8 bits (107), Expect = 2e-05
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKE---------FPYRMNHIL 51
++ T +FLA+KVEE V+K + P E + + ++
Sbjct: 82 ISSTALFLAAKVEEQA--------RKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTQELV 133
Query: 52 ECEFYLLELMDCCLIVYHPYRPLLQYVQDM-GQEDMLLPLAWRIVNDTYRTDLCLLYPPF 110
E +L+ + + + HP+ +++ Q + +D+ + N + T CL Y P
Sbjct: 134 ILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPT 193
Query: 111 MIALACLHVAC------VVQQKDARQW--FAELSVDMEKILEIIRVILKLYEQWKN 158
+IA C+H+AC + D + W + + +V +E + E+ L++ E+ N
Sbjct: 194 VIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPN 249
>gi|196049382 family with sequence similarity 58, member A isoform 1
[Homo sapiens]
Length = 248
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60
+A + ++LA KVEE + + + + + F + I++CE +L +
Sbjct: 72 IAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRV 131
Query: 61 MDCCLIVYHPYRPLLQYVQDMG--------QEDMLLPLAWRIVNDTYRTDLCLLYPPFMI 112
+ + HP++ LL Y+ + Q + AW ++ D+Y LCL + I
Sbjct: 132 LRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHI 191
Query: 113 ALACLHVACVV-------QQKDARQWFAELSVDMEK--ILEIIRVILKLY 153
A+A L++A V + + + W+ + D+ K I I+ ++++Y
Sbjct: 192 AVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIVSDLIQIY 241
>gi|196049384 family with sequence similarity 58, member A isoform 2
[Homo sapiens]
Length = 228
Score = 41.6 bits (96), Expect = 4e-04
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60
+A + ++LA KVEE + + + + + F + I++CE +L +
Sbjct: 72 IAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRV 131
Query: 61 MDCCLIVYHPYRPLLQYVQDMG--------QEDMLLPLAWRIVNDTYRTDLCLLYPPFMI 112
+ + HP++ LL Y+ + Q + AW ++ D+Y LCL + I
Sbjct: 132 LRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHI 191
Query: 113 ALACLHVACVV 123
A+A L++A V
Sbjct: 192 AVAVLYLALQV 202
>gi|157502165 family with sequence similarity 58 member B [Homo
sapiens]
Length = 252
Score = 37.7 bits (86), Expect = 0.006
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 33/178 (18%)
Query: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNH--------ILE 52
+A + ++LA KVEE + ++ ++ Y P P ++ I++
Sbjct: 76 IAMSSIYLAGKVEEQPLWAH--------DIISVSNRYFNPSSEPLGLDSRLWELRDSIVQ 127
Query: 53 CEFYLLELMDCCLIVYHPYRPLLQYVQDMG--------QEDMLLPLAWRIVNDTYRTDLC 104
E +L ++ + HP++ LL Y+ + Q + AW ++ D+Y LC
Sbjct: 128 RELLMLRVLRFQVSFQHPHKYLLYYLVSLKNWLNCHSWQRTPVAVTAWALLRDSYHGGLC 187
Query: 105 LLYPPFMIALACLHVACVV-------QQKDARQWFAELSVDMEK--ILEIIRVILKLY 153
L + IA+ L++A V + + + W+ S D+ K I I+ ++++Y
Sbjct: 188 LRFQAQHIAVVVLYLALQVYGVEVPAEVEAEKLWWQAFSDDLTKPIIDTIVSDLIQIY 245
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 31.2 bits (69), Expect = 0.60
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 152 LYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNS 193
L Q K+ +ER + + K +PPP++ GE GP G S
Sbjct: 950 LQGQEKDGEERDSKESSQQRKRKKRPPPSTAGEPGPAGCHQS 991
>gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo
sapiens]
Length = 887
Score = 29.6 bits (65), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 168 ILSKMPKPKPPP---NSEGEQGPNGSQNSSYSQ 197
IL + PKP PPP N E +G G+Q+ Y +
Sbjct: 765 ILGRDPKPLPPPMKLNKEMVEGMGGTQSEQYQE 797
>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
Length = 1822
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 18/68 (26%)
Query: 130 QWFAE---------LSVDMEKILEIIRVIL---------KLYEQWKNFDERKEMATILSK 171
QWF+E +D E + E ++ IL K+ ++ + + K+ A L++
Sbjct: 849 QWFSEPENILIKINAEIDKESLCEKVKEILTTEIAKKKNKVEKKLEEKEAEKKAAASLAE 908
Query: 172 MPKPKPPP 179
+P P PPP
Sbjct: 909 LPLPTPPP 916
>gi|221554518 cyclin L2 isoform D [Homo sapiens]
Length = 227
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 5 CVFLASKVEEFGVVSNTRLIAAATSVL---------KTRFSYAFPKEFPYRMNHILECEF 55
CV LASK+EE R I +V K +++ N I++ E
Sbjct: 127 CVHLASKIEEA-----PRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAER 181
Query: 56 YLLELMDCCLIVYHPYRPLLQYVQ 79
+L+ + C+ V HP++ ++ Y+Q
Sbjct: 182 RVLKELGFCVHVKHPHKIIVMYLQ 205
>gi|221554516 cyclin L2 isoform C [Homo sapiens]
Length = 236
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 5 CVFLASKVEEFGVVSNTRLIAAATSVL---------KTRFSYAFPKEFPYRMNHILECEF 55
CV LASK+EE R I +V K +++ N I++ E
Sbjct: 127 CVHLASKIEEA-----PRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAER 181
Query: 56 YLLELMDCCLIVYHPYRPLLQYVQ 79
+L+ + C+ V HP++ ++ Y+Q
Sbjct: 182 RVLKELGFCVHVKHPHKIIVMYLQ 205
>gi|88758578 cyclin L2 isoform B [Homo sapiens]
Length = 226
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 5 CVFLASKVEEFGVVSNTRLIAAATSVL---------KTRFSYAFPKEFPYRMNHILECEF 55
CV LASK+EE R I +V K +++ N I++ E
Sbjct: 127 CVHLASKIEEA-----PRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAER 181
Query: 56 YLLELMDCCLIVYHPYRPLLQYVQ 79
+L+ + C+ V HP++ ++ Y+Q
Sbjct: 182 RVLKELGFCVHVKHPHKIIVMYLQ 205
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 28.9 bits (63), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 167 TILSKMPKPKPPPNSEGEQGPNGSQNSSYSQ 197
T LS P P PP +G+QGP G + Q
Sbjct: 902 TFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQ 932
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 140 EKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPN 188
+K+ I+ +L Y++ K+F + + +++ +PKP PP+++ + PN
Sbjct: 46 DKLSSRIQSMLGNYDEMKDFIGDRSIPKLVA-IPKPTVPPSADEKSNPN 93
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 28.5 bits (62), Expect = 3.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 42 EFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT 101
E P + ++L C L +C I + L Y+QD ML+ WR+V +
Sbjct: 790 EEPDILFNMLNCLKILCLHGECLYIARKDHPQFLAYIQD----HMLIASLWRVVKSEFSQ 845
Query: 102 DLCLLYPPFMIALACLHVA 120
L P + AL+ H A
Sbjct: 846 LSSLAVPLLLHALSLPHGA 864
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 27.7 bits (60), Expect = 6.7
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 123 VQQKDARQWFAELSVDMEKILEIIRVI----LKLYEQ----WKNFDE-RKEMATILSKMP 173
++Q+D R W E ++E++ E+ R++ LYEQ F+E E + L
Sbjct: 378 LRQQDERLWQQETLQELERLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQ 437
Query: 174 KPKPPPNSEGEQGPNGSQNSS 194
+ K S G + P GS++++
Sbjct: 438 QVKELKKSGGAEEPRGSESAA 458
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 27.3 bits (59), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 170 SKMPKPKPPPNSEGEQGPNGS 190
S + P PP S GEQGP+G+
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGA 1134
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 27.3 bits (59), Expect = 8.7
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 123 VQQKDARQWFAELSVDMEKILEIIRVI----LKLYEQ----WKNFDE-RKEMATILSKMP 173
++Q+D R W E ++E++ E+ R++ LYEQ F+E E + L
Sbjct: 287 LRQQDERLWQQETLRELERLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQ 346
Query: 174 KPKPPPNSEGEQGPNGSQNSS 194
+ K S G + P GS++++
Sbjct: 347 QVKELEKSGGAEEPRGSESAA 367
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 27.3 bits (59), Expect = 8.7
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 123 VQQKDARQWFAELSVDMEKILEIIRVI----LKLYEQ----WKNFDE-RKEMATILSKMP 173
++Q+D R W E ++E++ E+ R++ LYEQ F+E E + L
Sbjct: 287 LRQQDERLWQQETLRELERLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQ 346
Query: 174 KPKPPPNSEGEQGPNGSQNSS 194
+ K S G + P GS++++
Sbjct: 347 QVKELEKSGGAEEPRGSESAA 367
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 27.3 bits (59), Expect = 8.7
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 59 ELMDCCLIVYHPYRPLL--QYVQDMGQEDMLLPLAWR-IVNDTYRTDLCLLYPPFMIALA 115
E++ +++ +R LL Q+ + Q +++ WR +N D + F++A A
Sbjct: 1018 EVLRRIILLQRWFRVLLCRQHFLHLRQASVIIQRFWRNYLNQKQVRDAAVQKDAFVMASA 1077
Query: 116 CLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATI 168
A ++Q W A L + ++ LE+ + + ++W+++ R+ MA I
Sbjct: 1078 ----AALLQAS----WRAHL--ERQRYLELRAAAIVIQQKWRDYYRRRHMAAI 1120
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 27.3 bits (59), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 172 MPKPKPPPNSEGEQGPNGSQ 191
+P P+ P SEG QGP G Q
Sbjct: 298 LPGPRGPMGSEGVQGPPGQQ 317
>gi|116089333 kelch domain containing 7A [Homo sapiens]
Length = 777
Score = 27.3 bits (59), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 169 LSKMPKPKPPPNSEGEQGPNGSQ 191
L+++P P+PPP S G +G Q
Sbjct: 313 LTEVPSPRPPPGSLGTGAASGGQ 335
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 27.3 bits (59), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 172 MPKPKPPPNSEGEQGPNGSQ 191
+P P+ P SEG QGP G Q
Sbjct: 297 LPGPRGPMGSEGVQGPPGQQ 316
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,346,609
Number of Sequences: 37866
Number of extensions: 359023
Number of successful extensions: 2725
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2648
Number of HSP's gapped (non-prelim): 68
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.