Guide to the Human Genome
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Name: FAM58A Sequence: fasta or formatted (248aa) NCBI GI: 196049382
Description:

family with sequence similarity 58, member A isoform 1

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [228aa] family with sequence similarity 58, member A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         22           2
 C cysteine            1.6          4           1
 D aspartate           4.4         11           2
 E glutamate           6.9         17           2
 F phenylalanine       4.0         10           2
 G glycine             5.2         13           5
 H histidine           3.6          9           1
 I isoleucine          6.5         16           2
 K lysine              2.4          6           1
 L leucine            10.5         26           2
 M methionine          2.4          6           1
 N asparagine          3.2          8           1
 P proline             6.0         15           1
 Q glutamine           4.8         12           1
 R arginine            6.5         16           1
 S serine              4.8         12           2
 T threonine           3.6          9           1
 V valine              7.7         19           1
 W tryptophan          2.4          6           2
 Y tyrosine            4.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 58, member A isofor... 
FAM58A                0.895   family with sequence similarity 58, member A isofor...
FAM58B                0.801   family with sequence similarity 58 member B 
CCNK                  0.160   cyclin K isoform 1 
CCNK                  0.160   cyclin K isoform 2 
CCNL1                 0.148   cyclin L1 
CCNL2                 0.144   cyclin L2 isoform A 
CCNT2                 0.123   cyclin T2 isoform b 
CCNT2                 0.123   cyclin T2 isoform a 
CCNL2                 0.099   cyclin L2 isoform C 
CCNL2                 0.099   cyclin L2 isoform D 
CCNL2                 0.099   cyclin L2 isoform B 
CCNT1                 0.097   cyclin T1 
CCNC                  0.080   cyclin C isoform a 
CCNH                  0.039   cyclin H 
CCNC                  0.037   cyclin C isoform b 
GMIP                  0.012   GEM interacting protein 
LOC100292124          0.010   PREDICTED: hypothetical protein XP_002346387 
RAB32                 0.008   RAB32, member RAS oncogene family 
FLJ10357              0.008   hypothetical protein LOC55701 
POU3F1                0.008   POU domain, class 3, transcription factor 1 
LOC651986             0.006   PREDICTED: similar to forkhead box L2 
LOC651986             0.006   PREDICTED: similar to forkhead box L2 
LOC100288524          0.006   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.006   PREDICTED: similar to forkhead box L2 
COL7A1                0.006   alpha 1 type VII collagen precursor 
COL24A1               0.006   collagen, type XXIV, alpha 1 
PEF1                  0.006   penta-EF-hand domain containing 1 
TCFL5                 0.006   transcription factor-like 5 protein 
CUX2                  0.006   cut-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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