Guide to the Human Genome
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Name: CCNT2 Sequence: fasta or formatted (663aa) NCBI GI: 4502629
Description:

cyclin T2 isoform a

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [730aa] cyclin T2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         36           2
 C cysteine            1.4          9           1
 D aspartate           4.1         27           1
 E glutamate           5.6         37           2
 F phenylalanine       2.0         13           2
 G glycine             4.8         32           2
 H histidine           6.3         42           2
 I isoleucine          5.0         33           2
 K lysine              7.7         51           2
 L leucine             8.0         53           2
 M methionine          2.0         13           1
 N asparagine          3.2         21           1
 P proline             5.1         34           2
 Q glutamine           6.0         40           2
 R arginine            4.4         29           2
 S serine             14.9         99           7
 T threonine           6.5         43           2
 V valine              4.7         31           2
 W tryptophan          1.1          7           2
 Y tyrosine            2.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin T2 isoform a 
CCNT2                 0.968   cyclin T2 isoform b 
CCNT1                 0.384   cyclin T1 
CCNK                  0.084   cyclin K isoform 1 
CCNK                  0.084   cyclin K isoform 2 
CCNL2                 0.058   cyclin L2 isoform A 
CCNL1                 0.057   cyclin L1 
FAM58A                0.046   family with sequence similarity 58, member A isofor...
CCNL2                 0.041   cyclin L2 isoform C 
CCNL2                 0.040   cyclin L2 isoform D 
CCNL2                 0.040   cyclin L2 isoform B 
FAM58B                0.040   family with sequence similarity 58 member B 
FAM58A                0.038   family with sequence similarity 58, member A isofor...
CCNC                  0.037   cyclin C isoform a 
FLG                   0.022   filaggrin 
NKTR                  0.019   natural killer-tumor recognition sequence 
HRNR                  0.019   hornerin 
DSPP                  0.017   dentin sialophosphoprotein preproprotein 
DYRK1A                0.017   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.017   dual-specificity tyrosine-(Y)-phosphorylation regula...
GPATCH8               0.017   G patch domain containing 8 
CTR9                  0.016   SH2 domain binding protein 1 
LOC643446             0.016   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.016   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.016   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.016   PREDICTED: similar to ribonucleic acid binding prote...
CCNC                  0.016   cyclin C isoform b 
CIR1                  0.015   CBF1 interacting corepressor 
CHGB                  0.015   chromogranin B precursor 
SFRS8                 0.015   splicing factor, arginine/serine-rich 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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