Guide to the Human Genome
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Name: TNFAIP8 Sequence: fasta or formatted (188aa) NCBI GI: 117676370
Description:

tumor necrosis factor, alpha-induced protein 8 isoform b

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [198aa] tumor necrosis factor, alpha-induced protein 8 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         11           2
 C cysteine            1.6          3           1
 D aspartate           5.9         11           2
 E glutamate           6.4         12           2
 F phenylalanine       5.3         10           1
 G glycine             2.1          4           1
 H histidine           3.7          7           1
 I isoleucine          6.4         12           2
 K lysine             10.1         19           3
 L leucine            11.2         21           2
 M methionine          3.2          6           1
 N asparagine          8.0         15           2
 P proline             1.1          2           1
 Q glutamine           5.3         10           1
 R arginine            4.3          8           1
 S serine              4.8          9           2
 T threonine           5.3         10           2
 V valine              6.9         13           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 8 isof... 
TNFAIP8               0.997   tumor necrosis factor, alpha-induced protein 8 isof...
TNFAIP8L3             0.668   tumor necrosis factor, alpha-induced protein 8-like ...
TNFAIP8L1             0.590   tumor necrosis factor, alpha-induced protein 8-like ...
TNFAIP8L2             0.524   tumor necrosis factor, alpha-induced protein 8-like...
UACA                  0.020   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.020   uveal autoantigen with coiled-coil domains and ankyr...
FILIP1L               0.020   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.020   filamin A interacting protein 1-like isoform 2 [Hom...
FILIP1L               0.020   filamin A interacting protein 1-like isoform 1 [Hom...
TRIML2                0.020   tripartite motif family-like 2 
NINL                  0.014   ninein-like 
ACAP2                 0.014   centaurin, beta 2 
ANGPTL2               0.014   angiopoietin-like 2 precursor 
C5                    0.011   complement component 5 preproprotein 
UHRF1BP1L             0.011   UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...
BEGAIN                0.009   brain-enriched guanylate kinase-associated protein ...
BEGAIN                0.009   brain-enriched guanylate kinase-associated protein [...
C10orf118             0.009   CTCL tumor antigen L14-2 
CENPE                 0.009   centromere protein E 
DOCK9                 0.009   dedicator of cytokinesis 9 isoform b 
DOCK9                 0.009   dedicator of cytokinesis 9 isoform a 
STAMBP                0.009   STAM binding protein 
STAMBP                0.009   STAM binding protein 
STAMBP                0.009   STAM binding protein 
APOB                  0.006   apolipoprotein B precursor 
RAI14                 0.006   retinoic acid induced 14 isoform d 
RAI14                 0.006   retinoic acid induced 14 isoform c 
RAI14                 0.006   retinoic acid induced 14 isoform b 
RAI14                 0.006   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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