Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TNFAIP8 Sequence: fasta or formatted (198aa) NCBI GI: 117676365
Description:

tumor necrosis factor, alpha-induced protein 8 isoform a

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [188aa] tumor necrosis factor, alpha-induced protein 8 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         12           2
 C cysteine            1.5          3           1
 D aspartate           5.6         11           2
 E glutamate           8.1         16           2
 F phenylalanine       5.1         10           1
 G glycine             2.0          4           1
 H histidine           4.0          8           1
 I isoleucine          6.1         12           2
 K lysine             10.1         20           3
 L leucine            10.6         21           2
 M methionine          3.0          6           1
 N asparagine          7.6         15           2
 P proline             1.0          2           1
 Q glutamine           5.1         10           1
 R arginine            4.0          8           1
 S serine              5.6         11           2
 T threonine           5.1         10           2
 V valine              7.1         14           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 8 isof... 
TNFAIP8               0.946   tumor necrosis factor, alpha-induced protein 8 isof...
TNFAIP8L3             0.641   tumor necrosis factor, alpha-induced protein 8-like ...
TNFAIP8L1             0.560   tumor necrosis factor, alpha-induced protein 8-like ...
TNFAIP8L2             0.497   tumor necrosis factor, alpha-induced protein 8-like...
FILIP1L               0.024   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.024   filamin A interacting protein 1-like isoform 1 [Hom...
TRIML2                0.022   tripartite motif family-like 2 
UACA                  0.019   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.019   uveal autoantigen with coiled-coil domains and ankyr...
FILIP1L               0.019   filamin A interacting protein 1-like isoform 2 [Hom...
CCDC112               0.019   coiled-coil domain containing 112 isoform 1 
CCDC112               0.019   coiled-coil domain containing 112 isoform 2 
NINL                  0.014   ninein-like 
ACAP2                 0.014   centaurin, beta 2 
ANGPTL2               0.014   angiopoietin-like 2 precursor 
C5                    0.011   complement component 5 preproprotein 
CENPE                 0.011   centromere protein E 
KIF5B                 0.011   kinesin family member 5B 
UHRF1BP1L             0.011   UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...
BEGAIN                0.008   brain-enriched guanylate kinase-associated protein ...
BEGAIN                0.008   brain-enriched guanylate kinase-associated protein [...
C10orf118             0.008   CTCL tumor antigen L14-2 
KIAA0774              0.008   hypothetical protein LOC23281 isoform a 
RAI14                 0.008   retinoic acid induced 14 isoform d 
RAI14                 0.008   retinoic acid induced 14 isoform c 
RAI14                 0.008   retinoic acid induced 14 isoform b 
RAI14                 0.008   retinoic acid induced 14 isoform a 
RAI14                 0.008   retinoic acid induced 14 isoform a 
RAI14                 0.008   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press