Guide to the Human Genome
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Name: TNFAIP8L1 Sequence: fasta or formatted (186aa) NCBI GI: 22748781
Description:

tumor necrosis factor, alpha-induced protein 8-like 1

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         19           2
 C cysteine            2.2          4           1
 D aspartate           5.9         11           2
 E glutamate           5.4         10           2
 F phenylalanine       4.3          8           1
 G glycine             6.5         12           2
 H histidine           4.3          8           1
 I isoleucine          1.1          2           1
 K lysine              5.9         11           2
 L leucine            17.2         32           3
 M methionine          2.7          5           1
 N asparagine          1.1          2           1
 P proline             1.6          3           1
 Q glutamine           3.2          6           1
 R arginine            9.7         18           2
 S serine              5.9         11           2
 T threonine           4.3          8           1
 V valine              7.0         13           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 8-like ... 
TNFAIP8               0.606   tumor necrosis factor, alpha-induced protein 8 isof...
TNFAIP8               0.606   tumor necrosis factor, alpha-induced protein 8 isof...
TNFAIP8L3             0.550   tumor necrosis factor, alpha-induced protein 8-like ...
TNFAIP8L2             0.532   tumor necrosis factor, alpha-induced protein 8-like...
MORC1                 0.012   MORC family CW-type zinc finger 1 
SNTG2                 0.012   syntrophin, gamma 2 
VIM                   0.009   vimentin 
SLC22A6               0.009   solute carrier family 22 member 6 isoform d 
SLC22A6               0.009   solute carrier family 22 member 6 isoform c 
SLC22A6               0.009   solute carrier family 22 member 6 isoform b 
SLC22A6               0.009   solute carrier family 22 member 6 isoform a 
NLRP5                 0.009   NACHT, LRR and PYD containing protein 5 
CCPG1                 0.009   cell cycle progression 1 isoform 2 
CCPG1                 0.009   cell cycle progression 1 isoform 1 
DMD                   0.006   dystrophin Dp427c isoform 
DMD                   0.006   dystrophin Dp427p2 isoform 
DMD                   0.006   dystrophin Dp427p1 isoform 
DMD                   0.006   dystrophin Dp427l isoform 
DMD                   0.006   dystrophin Dp427m isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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