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Search of human proteins with 58761544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58761544 amine oxidase (flavin containing) domain 2 isoform
a [Homo sapiens]
(876 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 1752 0.0
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 1686 0.0
gi|116256451 amine oxidase (flavin containing) domain 1 [Homo sa... 182 9e-46
gi|23097272 polyamine oxidase isoform 1 [Homo sapiens] 134 4e-31
gi|28559076 spermine oxidase isoform 2 [Homo sapiens] 128 2e-29
gi|28559074 spermine oxidase isoform 1 [Homo sapiens] 128 3e-29
gi|28559080 spermine oxidase isoform 4 [Homo sapiens] 120 7e-27
gi|4557735 monoamine oxidase A [Homo sapiens] 60 7e-09
gi|38202207 monoamine oxidase B [Homo sapiens] 60 9e-09
gi|23821023 interleukin 4 induced 1 isoform 1 precursor [Homo sa... 59 2e-08
gi|27477089 interleukin 4 induced 1 isoform 2 [Homo sapiens] 59 2e-08
gi|28559078 spermine oxidase isoform 3 [Homo sapiens] 57 6e-08
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 57 7e-08
gi|46397310 polyamine oxidase isoform 4 [Homo sapiens] 54 5e-07
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 51 4e-06
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 51 5e-06
gi|153070260 myristoylated alanine-rich protein kinase C substra... 47 6e-05
gi|33286446 opioid growth factor receptor [Homo sapiens] 47 8e-05
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 47 8e-05
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 46 1e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 46 1e-04
gi|124378039 SEC16 homolog A [Homo sapiens] 46 2e-04
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 46 2e-04
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 46 2e-04
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 46 2e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 2e-04
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 45 2e-04
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 45 2e-04
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 45 2e-04
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 1752 bits (4538), Expect = 0.0
Identities = 876/876 (100%), Positives = 876/876 (100%)
Query: 1 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP 60
MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP
Sbjct: 1 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP 60
Query: 61 RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY 120
RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY
Sbjct: 61 RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY 120
Query: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD 180
REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD
Sbjct: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD 180
Query: 181 DSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL 240
DSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL
Sbjct: 181 DSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL 240
Query: 241 WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK 300
WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK
Sbjct: 241 WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK 300
Query: 301 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN 360
VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN
Sbjct: 301 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN 360
Query: 361 PMAVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQL 420
PMAVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQL
Sbjct: 361 PMAVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQL 420
Query: 421 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK 480
DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK
Sbjct: 421 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK 480
Query: 481 ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP 540
ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP
Sbjct: 481 ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP 540
Query: 541 SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV 600
SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV
Sbjct: 541 SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV 600
Query: 601 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 660
ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA
Sbjct: 601 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 660
Query: 661 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 720
VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN
Sbjct: 661 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 720
Query: 721 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW 780
LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW
Sbjct: 721 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW 780
Query: 781 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL 840
ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL
Sbjct: 781 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL 840
Query: 841 SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM 876
SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM
Sbjct: 841 SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM 876
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 1686 bits (4366), Expect = 0.0
Identities = 852/876 (97%), Positives = 852/876 (97%), Gaps = 24/876 (2%)
Query: 1 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP 60
MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP
Sbjct: 1 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP 60
Query: 61 RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY 120
RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY
Sbjct: 61 RKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY 120
Query: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD 180
REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG
Sbjct: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG------- 173
Query: 181 DSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL 240
VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL
Sbjct: 174 -------------VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL 220
Query: 241 WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK 300
WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK
Sbjct: 221 WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGK 280
Query: 301 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN 360
VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN
Sbjct: 281 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN 340
Query: 361 PMAVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQL 420
PMAVVSKQVNMELAKIKQKCPLYEANGQA VPKEKDEMVEQEFNRLLEATSYLSHQL
Sbjct: 341 PMAVVSKQVNMELAKIKQKCPLYEANGQA----VPKEKDEMVEQEFNRLLEATSYLSHQL 396
Query: 421 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK 480
DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK
Sbjct: 397 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK 456
Query: 481 ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP 540
ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP
Sbjct: 457 ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP 516
Query: 541 SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV 600
SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV
Sbjct: 517 SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV 576
Query: 601 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 660
ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA
Sbjct: 577 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 636
Query: 661 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 720
VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN
Sbjct: 637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 696
Query: 721 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW 780
LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW
Sbjct: 697 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPW 756
Query: 781 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL 840
ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL
Sbjct: 757 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL 816
Query: 841 SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM 876
SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM
Sbjct: 817 SGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM 852
>gi|116256451 amine oxidase (flavin containing) domain 1 [Homo
sapiens]
Length = 590
Score = 182 bits (463), Expect = 9e-46
Identities = 109/287 (37%), Positives = 160/287 (55%), Gaps = 27/287 (9%)
Query: 571 LSLKHWDQDDDF-EFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAV 629
+S + WD ++ F +F G H + GYS + LAEGLDI+L + V+ + Y SG EV
Sbjct: 322 VSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDY--SGDEVQVT 379
Query: 630 NTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLC 689
T T Y VL T+PL +L Q A+QF PPL E K A+ +G G + K+ L
Sbjct: 380 TTDGTG----YSAQKVLVTVPLALL--QKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQ 433
Query: 690 FDRVFWDPSV---NLFGHVGSTTASRGELFLFWNL---YKAPILLALVAGEAAGIMENIS 743
F FWD V + FGHV + + RG +F+++ K +L++++AGEA + +
Sbjct: 434 FPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLD 493
Query: 744 DDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQP 803
D ++ +C+A L+ +F VP P + V+RW DPW + +YS+V G SG YD++A+
Sbjct: 494 DKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAED 553
Query: 804 ITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 850
I +FFAGE T R++P TV GA LSG+REA +IA
Sbjct: 554 IQ------------GTVFFAGEATNRHFPQTVTGAYLSGVREASKIA 588
Score = 73.6 bits (179), Expect = 8e-13
Identities = 48/107 (44%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 269 VHRVHSYLERHGLINFGIYKRIKP---LPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 324
V R+ ++ R GLIN G+ LP K VIIIG+G +GLAAARQL +FG+ V
Sbjct: 217 VERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKV 276
Query: 325 TLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLGGNPMAVVSKQVN 370
T+LEA+DR+GGRV + V GA +V G NP+A++ +QV+
Sbjct: 277 TVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQVS 323
>gi|23097272 polyamine oxidase isoform 1 [Homo sapiens]
Length = 511
Score = 134 bits (337), Expect = 4e-31
Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 21/220 (9%)
Query: 645 VLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGH 704
V+ T+PLG L++ F PPLP K A++++GFG NK+ L F+ FW+P L
Sbjct: 283 VIVTVPLGFLREHLDTF-FDPPLPAEKAEAIRKIGFGTNNKIFLEFEEPFWEPDCQLIQL 341
Query: 705 VGSTTA----SRGELFLFW-----------NLYKAPILLALVAGEAAGIMENISDDVIVG 749
V T+ + EL W +L +AG + ME +SD+ ++
Sbjct: 342 VWEDTSPLEDAAPELQDAWFRKLIGFVVLPAFASVHVLCGFIAGLESEFMETLSDEEVLL 401
Query: 750 RCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPS 809
+L+ + G+ +P PK + SRW + P+ RGSYSYVA GS+G D DL+AQP+
Sbjct: 402 CLTQVLRRVTGNPRLPAPKSVLRSRWHSAPYTRGSYSYVAVGSTGGDLDLLAQPL----P 457
Query: 810 IPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRI 849
GA + ++ FAGE T R + +T HGALLSG REA R+
Sbjct: 458 ADGAGAQL-QILFAGEATHRTFYSTTHGALLSGWREADRL 496
Score = 40.4 bits (93), Expect = 0.007
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 300 KVIIIGSGVSGLAAARQL--QSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL 357
+V+++G G++GL AA++L S + +LEA R GGR+ + R V ++GA + G
Sbjct: 15 RVLVVGGGIAGLGAAQRLCGHSAFPHLRVLEATARAGGRIRSERCFGGVVEVGAHWIHGP 74
Query: 358 G-GNPMAVVSKQVNMELAK-IKQKCPLYEANG 387
GNP+ ++ + + K + Q+ L E G
Sbjct: 75 SRGNPVFQLAAEYGLLGEKELSQENQLVETGG 106
>gi|28559076 spermine oxidase isoform 2 [Homo sapiens]
Length = 502
Score = 128 bits (322), Expect = 2e-29
Identities = 107/384 (27%), Positives = 172/384 (44%), Gaps = 46/384 (11%)
Query: 495 PRDITAEFL-VKSKHRDLTALCKEYDEL--AETQGKL----EEKLQELEANPPSDVYLSS 547
P+D+ EF + ++ +LT +D+ AE+Q + E+++ N P D +
Sbjct: 132 PKDVVEEFSDLYNEVYNLTQEFFRHDKPVNAESQNSVGVFTREEVRNRIRNDPDDPEATK 191
Query: 548 RDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD 607
R + + + +E ++ S + + E G+H + +G+ V LAEG+
Sbjct: 192 RLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIP 251
Query: 608 ---IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFV 664
I+L VR + + + P GVLK+Q + F
Sbjct: 252 AHVIQLGKPVRCIHWDQASARPRGPEIE-----------------PRGVLKRQYTSF-FR 293
Query: 665 PPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 717
P LP K +A+ R+G G +K+ L F+ FW P N V A L
Sbjct: 294 PGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESHTLTYPPELWYR 353
Query: 718 ----FWNLYKAP----ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKE 769
F LY +L + GE A +ME D+ + C +L+ G+ +P+P+
Sbjct: 354 KICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRR 413
Query: 770 TVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIR 829
+ S W ++P+ RGSYSY GSSG D + +A+P+ S AP ++ F+GE T R
Sbjct: 414 ILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPM---QVLFSGEATHR 470
Query: 830 NYPATVHGALLSGLREAGRIADQF 853
Y +T HGALLSG REA R+ + +
Sbjct: 471 KYYSTTHGALLSGQREAARLIEMY 494
Score = 59.7 bits (143), Expect = 1e-08
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 300 KVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLG 358
+V++IG+G++GLAAA+ L G DVT+LEA +GGRV + + G+ +LGA + G
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSH 85
Query: 359 GNPMAVVSK-----QVNMELAKIKQKCPLYEANGQADTV-----KVPKEKDEMVEQEFNR 408
GNP+ +++ + + + + LY NG A + ++PK+ E +N
Sbjct: 86 GNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNE 145
Query: 409 LLEAT-SYLSHQLDFNVLNNKPVSLGQALEV 438
+ T + H N + V + EV
Sbjct: 146 VYNLTQEFFRHDKPVNAESQNSVGVFTREEV 176
>gi|28559074 spermine oxidase isoform 1 [Homo sapiens]
Length = 555
Score = 128 bits (321), Expect = 3e-29
Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 643 DAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLF 702
D V+ T+ LGVLK+Q + F P LP K +A+ R+G G +K+ L F+ FW P N
Sbjct: 326 DHVIVTVSLGVLKRQYTSF-FRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSL 384
Query: 703 GHVGSTTASRGELFL-----------FWNLYKAP----ILLALVAGEAAGIMENISDDVI 747
V A L F LY +L + GE A +ME D+ +
Sbjct: 385 QFVWEDEAESHTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAV 444
Query: 748 VGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPG 807
C +L+ G+ +P+P+ + S W ++P+ RGSYSY GSSG D + +A+P+
Sbjct: 445 AEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYT 504
Query: 808 PSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 853
S AP ++ F+GE T R Y +T HGALLSG REA R+ + +
Sbjct: 505 ESSKTAPM---QVLFSGEATHRKYYSTTHGALLSGQREAARLIEMY 547
Score = 59.7 bits (143), Expect = 1e-08
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 300 KVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLG 358
+V++IG+G++GLAAA+ L G DVT+LEA +GGRV + + G+ +LGA + G
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSH 85
Query: 359 GNPMAVVSK-----QVNMELAKIKQKCPLYEANGQADTV-----KVPKEKDEMVEQEFNR 408
GNP+ +++ + + + + LY NG A + ++PK+ E +N
Sbjct: 86 GNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNE 145
Query: 409 LLEAT-SYLSHQLDFNVLNNKPVSLGQALEV 438
+ T + H N + V + EV
Sbjct: 146 VYNLTQEFFRHDKPVNAESQNSVGVFTREEV 176
>gi|28559080 spermine oxidase isoform 4 [Homo sapiens]
Length = 532
Score = 120 bits (300), Expect = 7e-27
Identities = 111/412 (26%), Positives = 178/412 (43%), Gaps = 72/412 (17%)
Query: 495 PRDITAEFL-VKSKHRDLTALCKEYDEL--AETQGKL----EEKLQELEANPPSDVYLSS 547
P+D+ EF + ++ +LT +D+ AE+Q + E+++ N P D +
Sbjct: 132 PKDVVEEFSDLYNEVYNLTQEFFRHDKPVNAESQNSVGVFTREEVRNRIRNDPDDPEATK 191
Query: 548 RDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD 607
R + + + +E ++ S + + E G+H + +G+ V LAEG+
Sbjct: 192 RLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIP 251
Query: 608 ---IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFV 664
I+L VR + + + P GVLK+Q + F
Sbjct: 252 AHVIQLGKPVRCIHWDQASARPRGPEIE-----------------PRGVLKRQYTSF-FR 293
Query: 665 PPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 717
P LP K +A+ R+G G +K+ L F+ FW P N V A L
Sbjct: 294 PGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESHTLTYPPELWYR 353
Query: 718 ----FWNLYKAP----ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKE 769
F LY +L + GE A +ME D+ + C +L+ G+ +P+P+
Sbjct: 354 KICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRR 413
Query: 770 TVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPI----------------TPG------ 807
+ S W ++P+ RGSYSY GSSG D + +A+P+ PG
Sbjct: 414 ILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAHGSSTKQQPGHLFSSK 473
Query: 808 -PSIP-----GAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 853
P P GA +P+ ++ F+GE T R Y +T HGALLSG REA R+ + +
Sbjct: 474 CPEQPLDANRGAVKPM-QVLFSGEATHRKYYSTTHGALLSGQREAARLIEMY 524
Score = 59.7 bits (143), Expect = 1e-08
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 300 KVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLG 358
+V++IG+G++GLAAA+ L G DVT+LEA +GGRV + + G+ +LGA + G
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSH 85
Query: 359 GNPMAVVSK-----QVNMELAKIKQKCPLYEANGQADTV-----KVPKEKDEMVEQEFNR 408
GNP+ +++ + + + + LY NG A + ++PK+ E +N
Sbjct: 86 GNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNE 145
Query: 409 LLEAT-SYLSHQLDFNVLNNKPVSLGQALEV 438
+ T + H N + V + EV
Sbjct: 146 VYNLTQEFFRHDKPVNAESQNSVGVFTREEV 176
>gi|4557735 monoamine oxidase A [Homo sapiens]
Length = 527
Score = 60.5 bits (145), Expect = 7e-09
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 27/174 (15%)
Query: 301 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG--NYVADLGAMVVTGLG 358
V++IG G+SGL+AA+ L +G+ V +LEARDRVGGR T R +YV GA V G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV--GPT 73
Query: 359 GNPMAVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSH 418
N + +SK++ +E Y+ N V+ K K F + +Y
Sbjct: 74 QNRILRLSKELGIE---------TYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAY--- 121
Query: 419 QLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKM 472
LD+N L ++G+ + + +H + W K+ +KEL++K+
Sbjct: 122 -LDYNNLWRTIDNMGKEIPTDAPWEAQHA-----DKWDKMT-----MKELIDKI 164
Score = 43.1 bits (100), Expect = 0.001
Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 32/251 (12%)
Query: 605 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFV 664
G +KLN V V ++ + +N Y+C V+ +P + + + F
Sbjct: 235 GDQVKLNHPVTHVDQSSDNIIIETLNHEH------YECKYVINAIPPTLTAK----IHFR 284
Query: 665 PPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNL--- 721
P LP + +QR+ G + K ++ + FW + G + + L
Sbjct: 285 PELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK----DYCGCMIIEDEDAPISITLDDT 340
Query: 722 ---YKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRAD 778
P ++ + A + + ++ + + + GS P W +
Sbjct: 341 KPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEE 400
Query: 779 PWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGA 838
++ G Y+ Y + + QP+ R+FFAG T + + GA
Sbjct: 401 QYSGGCYTAYFPPGIMTQYGRVIR------------QPVGRIFFAGTETATKWSGYMEGA 448
Query: 839 LLSGLREAGRI 849
+ +G R A +
Sbjct: 449 VEAGERAAREV 459
>gi|38202207 monoamine oxidase B [Homo sapiens]
Length = 520
Score = 60.1 bits (144), Expect = 9e-09
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 301 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR--KGNYVADLGAMVVTGLG 358
V+++G G+SG+AAA+ L G++V +LEARDRVGGR T R K YV DLG V G
Sbjct: 7 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPT 64
Query: 359 GNPMAVVSKQVNMELAKIKQ 378
N + ++K++ +E K+ +
Sbjct: 65 QNRILRLAKELGLETYKVNE 84
Score = 41.2 bits (95), Expect = 0.004
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 39/237 (16%)
Query: 653 VLKQQPPA----VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGST 708
V+ PP + F PPLP + + R+ G++ K ++ + FW + G+
Sbjct: 260 VISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKK----DYCGTM 315
Query: 709 TASRGELFLFWNLYK-------APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGS 761
E + + L A I+ ++A +A + ++ + C K + GS
Sbjct: 316 IIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAK-VLGS 374
Query: 762 SAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLF 821
+P W + ++ G Y+ Y + + QP+ R++
Sbjct: 375 LEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLR------------QPVDRIY 422
Query: 822 FAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPR----QATP---GVPAQ 871
FAG T ++ + GA+ +G R A I L AM +P Q+ P VPAQ
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAAREI----LHAMGKIPEDEIWQSEPESVDVPAQ 475
>gi|23821023 interleukin 4 induced 1 isoform 1 precursor [Homo
sapiens]
Length = 567
Score = 59.3 bits (142), Expect = 2e-08
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 8/74 (10%)
Query: 281 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF 340
++ +G+ + +KP +VI++G+GV+GL AA+ L G VT+LEA +R+GGR+ T+
Sbjct: 48 VVTWGLNRTLKPQ------RVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTY 101
Query: 341 RKGN--YVADLGAM 352
R N ++ +LGAM
Sbjct: 102 RDQNTGWIGELGAM 115
Score = 48.5 bits (114), Expect = 3e-05
Identities = 66/260 (25%), Positives = 98/260 (37%), Gaps = 24/260 (9%)
Query: 594 GYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL 651
G+ +P AL L + LN V + V + + K D VL T
Sbjct: 265 GWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASG 324
Query: 652 GVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTAS 711
+K+ + F PPLP A++R+ + KV L F R FW GH + S
Sbjct: 325 PAVKR----ITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPS 380
Query: 712 RGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET- 770
R +F A +L + +AA +S + + L + + G T
Sbjct: 381 R-MIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTG 439
Query: 771 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 830
VV RW D ++G + ++ P P R++FAGEHT
Sbjct: 440 VVKRWAEDQHSQGGF-------------VVQPPALWQTEKDDWTVPYGRIYFAGEHTA-- 484
Query: 831 YP-ATVHGALLSGLREAGRI 849
YP V A+ S LR A +I
Sbjct: 485 YPHGWVETAVKSALRAAIKI 504
>gi|27477089 interleukin 4 induced 1 isoform 2 [Homo sapiens]
Length = 589
Score = 59.3 bits (142), Expect = 2e-08
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 8/74 (10%)
Query: 281 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF 340
++ +G+ + +KP +VI++G+GV+GL AA+ L G VT+LEA +R+GGR+ T+
Sbjct: 70 VVTWGLNRTLKPQ------RVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTY 123
Query: 341 RKGN--YVADLGAM 352
R N ++ +LGAM
Sbjct: 124 RDQNTGWIGELGAM 137
Score = 48.5 bits (114), Expect = 3e-05
Identities = 66/260 (25%), Positives = 98/260 (37%), Gaps = 24/260 (9%)
Query: 594 GYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL 651
G+ +P AL L + LN V + V + + K D VL T
Sbjct: 287 GWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASG 346
Query: 652 GVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTAS 711
+K+ + F PPLP A++R+ + KV L F R FW GH + S
Sbjct: 347 PAVKR----ITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPS 402
Query: 712 RGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET- 770
R +F A +L + +AA +S + + L + + G T
Sbjct: 403 R-MIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTG 461
Query: 771 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 830
VV RW D ++G + ++ P P R++FAGEHT
Sbjct: 462 VVKRWAEDQHSQGGF-------------VVQPPALWQTEKDDWTVPYGRIYFAGEHTA-- 506
Query: 831 YP-ATVHGALLSGLREAGRI 849
YP V A+ S LR A +I
Sbjct: 507 YPHGWVETAVKSALRAAIKI 526
>gi|28559078 spermine oxidase isoform 3 [Homo sapiens]
Length = 190
Score = 57.4 bits (137), Expect = 6e-08
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 300 KVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLG 358
+V++IG+G++GLAAA+ L G DVT+LEA +GGRV + + G+ +LGA + G
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSH 85
Query: 359 GNPMAVVSK-----QVNMELAKIKQKCPLYEANGQADTV-----KVPKEKDEMVEQEFNR 408
GNP+ +++ + + + + LY NG A + ++PK+ E +N
Sbjct: 86 GNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNE 145
Query: 409 LLE 411
++
Sbjct: 146 PMQ 148
Score = 40.8 bits (94), Expect = 0.006
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 819 RLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 853
++ F+GE T R Y +T HGALLSG REA R+ + +
Sbjct: 148 QVLFSGEATHRKYYSTTHGALLSGQREAARLIEMY 182
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 57.0 bits (136), Expect = 7e-08
Identities = 53/177 (29%), Positives = 68/177 (38%), Gaps = 25/177 (14%)
Query: 7 AAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGER-------- 58
AAAAAAAAA AA G +GPG G+ A G + G G E
Sbjct: 3 AAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62
Query: 59 TPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR---RTSRRKR 115
P + P PP A PPG+ GP G E G+ E G +
Sbjct: 63 EPEPEPEPEEEPPRPRA-PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEA 121
Query: 116 AKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPP-----EEENESE 167
K REM+E L +E + EK+ + PPP A P EE+ E++
Sbjct: 122 IKARVREMEEEAEKL--------KELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEAD 170
>gi|46397310 polyamine oxidase isoform 4 [Homo sapiens]
Length = 486
Score = 54.3 bits (129), Expect = 5e-07
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 645 VLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGH 704
V+ T+PLG L++ F PPLP K A++++GFG NK+ L F+ FW+P L
Sbjct: 283 VIVTVPLGFLREHLDTF-FDPPLPAEKAEAIRKIGFGTNNKIFLEFEEPFWEPDCQLIQL 341
Query: 705 VGSTTA----SRGELFLFW-----------NLYKAPILLALVAGEAAGIMENISDDVIV 748
V T+ + EL W +L +AG + ME +SD+ ++
Sbjct: 342 VWEDTSPLEDAAPELQDAWFRKLIGFVVLPAFASVHVLCGFIAGLESEFMETLSDEEVL 400
Score = 40.4 bits (93), Expect = 0.007
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 300 KVIIIGSGVSGLAAARQL--QSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL 357
+V+++G G++GL AA++L S + +LEA R GGR+ + R V ++GA + G
Sbjct: 15 RVLVVGGGIAGLGAAQRLCGHSAFPHLRVLEATARAGGRIRSERCFGGVVEVGAHWIHGP 74
Query: 358 G-GNPMAVVSKQVNMELAK-IKQKCPLYEANG 387
GNP+ ++ + + K + Q+ L E G
Sbjct: 75 SRGNPVFQLAAEYGLLGEKELSQENQLVETGG 106
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 51.2 bits (121), Expect = 4e-06
Identities = 65/252 (25%), Positives = 93/252 (36%), Gaps = 51/252 (20%)
Query: 17 AATGTEAGP---GTAGGSENGSEVAAQPAGL--SGPAEVGPGAVGERTPRKKEPPRASPP 71
+A+G E P G G S N + A S P E PG + P PP P
Sbjct: 363 SASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPL---PPPHRGP 419
Query: 72 GGLAEPPGSAGPQAGPTVVPGSATP--------METGIAETPEGRRTSRRKRAKVEYREM 123
G PPG + GP P + + +E +RR+R + E R
Sbjct: 420 AGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQ 479
Query: 124 DESLANLSE-----DEYYSEEERNAKAE------------------KEKKLPP-PPPQAP 159
+E A +E DE + ++ KAE KE PP PPP +
Sbjct: 480 EERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASA 539
Query: 160 PEEENESEPEEPSGQAGGLQDDSSGGY--------GDGQASGVEGAAFQSRLPHDRMTSQ 211
P E+EPEEP+ QA Q + G G G S +F++ ++ S+
Sbjct: 540 PTP--ETEPEEPA-QAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSK 596
Query: 212 EAACFPDIISGP 223
E P+ + P
Sbjct: 597 EGPEPPEEVPPP 608
Score = 38.1 bits (87), Expect = 0.036
Identities = 45/157 (28%), Positives = 57/157 (36%), Gaps = 31/157 (19%)
Query: 35 SEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEP--PGSAGP-QAGPTVVP 91
+E AA PA S PA P AV + P PP AS P EP P A P Q+ PT
Sbjct: 506 AEPAAPPAAPSTPAP--PPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPGV 563
Query: 92 GSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKL 151
+A + +G G TS E ++ L + K+
Sbjct: 564 AAAPTLVSG------GGSTSSTSSGSFEASPVEPQLPS-------------------KEG 598
Query: 152 PPPPPQAPPEEENESEPEEPSGQA-GGLQDDSSGGYG 187
P PP + PP EP G G + S G G
Sbjct: 599 PEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLG 635
Score = 35.8 bits (81), Expect = 0.18
Identities = 44/209 (21%), Positives = 76/209 (36%), Gaps = 33/209 (15%)
Query: 11 AAAAAAAATGTEAGPGTAGGSENGSEVA-AQPAGLSGPAEVGPGAVGERTPRKKEPPRAS 69
A ++ +++ G GPG G G + + P S P E P + P PP +S
Sbjct: 1405 AGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGL----PLPPPPPSSS 1460
Query: 70 P-----------PGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKV 118
P G+ + + G PG + G+ + P+G S R +
Sbjct: 1461 AVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQG--PSPRPPTRY 1518
Query: 119 EYREMDESLANLSEDEYYSEEERNAK--------AEKEKKLPPP----PPQAPPEEENES 166
E + ++ + LS D ++ E + + PP PP+ P + ES
Sbjct: 1519 EPQRVN---SGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPKRRERPPRKPELLQEES 1575
Query: 167 EPEEPSGQAGGLQDDSSGGYGDGQASGVE 195
P S G + + G + + +G E
Sbjct: 1576 LPPPHSSGFLGSKPEGPGPQAESRDTGTE 1604
Score = 35.0 bits (79), Expect = 0.30
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 27/162 (16%)
Query: 7 AAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPP 66
A + AAA +G G+ + +GS A P P++ GP P ++ PP
Sbjct: 555 AQSTPTPGVAAAPTLVSGGGSTSSTSSGS-FEASPVEPQLPSKEGP------EPPEEVPP 607
Query: 67 RASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126
+PP EP G GPT P S G+ + + + + ++ ++
Sbjct: 608 PTTPPVPKVEPKGDG---IGPTRQPPS-----QGLGYP----KYQKSLPPRFQRQQQEQL 655
Query: 127 LANLSEDEYYSEEERNAKAEKEKKLPP--------PPPQAPP 160
L + ++ ++ +A PP P PQAPP
Sbjct: 656 LKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPP 697
Score = 33.5 bits (75), Expect = 0.89
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 34 GSEVAAQPAG--LSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVP 91
G+E++ +G LSG ++V G +R+ SP GGL G GP P
Sbjct: 1643 GTEMSQSDSGVDLSGDSQVSSGPCSQRS---------SPDGGLK------GAAEGPPKRP 1687
Query: 92 GSATPMETGIAETPEGRRTSRR 113
G ++P+ E P G RR
Sbjct: 1688 GGSSPLNAVPCEGPPGSEPPRR 1709
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 50.8 bits (120), Expect = 5e-06
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 15/215 (6%)
Query: 16 AAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP-RKKEPPRASPPGGL 74
A TG G + S + + AQ A P + G RT RK++ P+ P GG
Sbjct: 115 AGGTGQRRG---SRSSPSADQQRAQDREEEAAAAPVPTSRGHRTEKRKRQQPQRRPAGGT 171
Query: 75 AEPPGS-AGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSED 133
+ GS + P A A T G RT +RK + + R +
Sbjct: 172 GQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTGQRRGSR 231
Query: 134 EYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGDGQASG 193
S +++ A+ +E+ P P + + +P++P + +GG G + SG
Sbjct: 232 SSPSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRR-------PAGGTGQRRGSG 284
Query: 194 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQK 228
+A Q DR +EAA P S +T+K
Sbjct: 285 YSPSADQQG-AQDR--EEEAAAAPAPTSSGHRTEK 316
Score = 46.6 bits (109), Expect = 1e-04
Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 12/189 (6%)
Query: 16 AAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKK-EPPRASPPGGL 74
A TG G + S + + AQ A P + G RT ++K + P+ P GG
Sbjct: 221 AGGTGQRRG---SRSSPSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGT 277
Query: 75 AEPPGSA-GPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSED 133
+ GS P A A T G RT +RKR +++ + +
Sbjct: 278 GQRRGSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSG 337
Query: 134 EYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGDGQASG 193
S ++ A+ +E+ P P + + +P++P Q + G G + SG
Sbjct: 338 CSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQP-------QRRPAAGTGQRRGSG 390
Query: 194 VEGAAFQSR 202
+A Q R
Sbjct: 391 SSPSADQQR 399
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 47.4 bits (111), Expect = 6e-05
Identities = 58/250 (23%), Positives = 86/250 (34%), Gaps = 36/250 (14%)
Query: 9 AAAAAAAAAATGTEAGPGTAGG------SENGSEVAAQPAGLSG------PAEVGPGAVG 56
AA A++ + A G E G G +E+G++ Q G + PA G GA
Sbjct: 22 AAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQANGSAPAADKEEPAAAGSGAAS 81
Query: 57 ERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAE------------- 103
K EP A+ P A P P G PGS T E A
Sbjct: 82 PSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDG 141
Query: 104 -TPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEE 162
TP + +K+ K + L+ S + E +AE P ++
Sbjct: 142 ATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGGEAE-------APAAEGGKD 194
Query: 163 ENESEPEEPSGQAGGLQDDSSGGYGDGQASGVEGAAF---QSRLPHDRMTSQEAACFPDI 219
E + +AG + + G+ A+G EGAA Q P + + E D
Sbjct: 195 EAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPPASDE 254
Query: 220 ISGPQQTQKV 229
++ KV
Sbjct: 255 TKAAEEPSKV 264
Score = 39.7 bits (91), Expect = 0.012
Identities = 39/119 (32%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 4 GKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSG--PAEVGP---GAVGER 58
GK AA AAAAAA G +G A G E AA G +G P E P E+
Sbjct: 192 GKDEAAGGAAAAAAEAGAASGEQAAA---PGEEAAAGEEGAAGGDPQEAKPQEAAVAPEK 248
Query: 59 TPRKKEPPRASPPGGLAEPPG-SAGPQAGPTVVPGSATP-----METGIAETPEGRRTS 111
P E A P + E AG A P +A P E AE P S
Sbjct: 249 PPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEPAAAAAS 307
Score = 35.8 bits (81), Expect = 0.18
Identities = 34/96 (35%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 3 SGKKAAAAAAAAA-----AAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGA--- 54
+G AAAAA A A AAA G EA G G + G A+P + E P +
Sbjct: 197 AGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAA-GGDPQEAKPQEAAVAPEKPPASDET 255
Query: 55 VGERTPRKKEPPRASPPGGLA---EPPGSAGPQAGP 87
P K E +A G A E P +AGP A P
Sbjct: 256 KAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPP 291
Score = 33.1 bits (74), Expect = 1.2
Identities = 55/245 (22%), Positives = 81/245 (33%), Gaps = 38/245 (15%)
Query: 4 GKKAAAAAAAAAAA-------ATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVG 56
G+ AAAAA A A+ A G A PG+ +E + AA + +
Sbjct: 88 GEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDGATPSPS 147
Query: 57 ERTPRKKEP------------------PRASPPGGLAEPPGSAGPQAGPTVVPGSATPME 98
TP+KK+ + + GG AE P + G G G A
Sbjct: 148 NETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGGEAEAPAAEG---GKDEAAGGA---- 200
Query: 99 TGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQA 158
A G + + A E E A + + +E EK
Sbjct: 201 -AAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPPASDETKAAE 259
Query: 159 PPEEENESEPEEPSGQAGGLQDDSSGGYG---DGQASGVEGAAFQSRLPHDRMTSQEA-- 213
P + E + EE A + S+ G G + +A+ E A + SQEA
Sbjct: 260 EPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEPAAAAASSACAAPSQEAQP 319
Query: 214 ACFPD 218
C P+
Sbjct: 320 ECSPE 324
Score = 33.1 bits (74), Expect = 1.2
Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 41/132 (31%)
Query: 4 GKKAAAAAAAAA----AAATGTEAGPG---TAGG-------------------------S 31
G AAAA A AA AAA G EA G AGG +
Sbjct: 199 GAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPPASDETKAA 258
Query: 32 ENGSEVA---AQPAGLS-----GPAEVGPGAVGER-TPRKKEPPRASPPGGLAEPPGSAG 82
E S+V A+ AG S P+ GPGA E+ +EP A+ A P A
Sbjct: 259 EEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEPAAAAASSACAAPSQEAQ 318
Query: 83 PQAGPTVVPGSA 94
P+ P P A
Sbjct: 319 PECSPEAPPAEA 330
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 47.0 bits (110), Expect = 8e-05
Identities = 54/184 (29%), Positives = 68/184 (36%), Gaps = 27/184 (14%)
Query: 3 SGKKAAAAAAAA---AAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERT 59
+G AA A+ A A A + +G AG SENG E + G +GP E PG+
Sbjct: 465 AGDSAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTE--GRTGPKEGTPGS----- 517
Query: 60 PRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVE 119
E P SP G P P P+ PG P G A S +
Sbjct: 518 --PSETPGPSPAG-----PAGDEPAESPSETPG---PRPAGPAGDEPAESPSETPGPRPA 567
Query: 120 YREMDESLANLSEDEYYSE--EERNAKAEKEKKLPPPPPQAPPEEENESEPEE-----PS 172
DE + SE S R+ AE + P P P P +E P E P+
Sbjct: 568 GPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPA 627
Query: 173 GQAG 176
G AG
Sbjct: 628 GPAG 631
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 47.0 bits (110), Expect = 8e-05
Identities = 48/186 (25%), Positives = 66/186 (35%), Gaps = 27/186 (14%)
Query: 41 PAGLSGP--AEVGPGAVGERTPRKKEPPRA-SPPGGLAEPPGSAGPQAGPTVVP------ 91
P+G + P A GP P K+EP + PG L PP P GP +P
Sbjct: 803 PSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVP 862
Query: 92 ------GSATPMETGI------AETPEGRRTSRRKRAKVEYREMDESLANLSEDEY-YSE 138
G +E + + E + + E E +E EDE Y E
Sbjct: 863 EGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFE 922
Query: 139 EERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGDGQASGVEGAA 198
EE + E E++ + EEE E E EE L++ +G EGA
Sbjct: 923 EEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEE-----LEEVEDLEFGTAGGEVEEGAP 977
Query: 199 FQSRLP 204
LP
Sbjct: 978 PPPTLP 983
Score = 39.3 bits (90), Expect = 0.016
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 26 GTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGL--AEPPGSA-- 81
GTAGG E A P P + P +P K +P PG L E PG+
Sbjct: 966 GTAGGEV---EEGAPP-----PPTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEE 1017
Query: 82 -GPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEE 140
G PT+ P A P + + E + VE E + L E+E E+
Sbjct: 1018 RGADTAPTLAP-EALPSQGEVEREGESPAAGPPPQELVE--EEPSAPPTLLEEE---TED 1071
Query: 141 RNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGD 188
+ K + PPP+ P EEE E+E E + Q QDD++ D
Sbjct: 1072 GSDKVQ-------PPPETPAEEEMETETEAEALQEKE-QDDTAAMLAD 1111
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 46.2 bits (108), Expect = 1e-04
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 7 AAAAAAAAAAAATGTE-------AGPGTAGGSENGSEVAAQPAGLSGPAEVG---PGAVG 56
AAAAAAAAAAA+ G + PG++GG G +A P S ++G P G
Sbjct: 339 AAAAAAAAAAASGGAQQRSHHAPMSPGSSGG--GGQPLARTPQPSSPMDQMGKMRPQPYG 396
Query: 57 ERTPRKKEPPRASPP----GGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSR 112
P ++ S P G +P GS PQ P + G A G++ T
Sbjct: 397 GTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYT-------- 448
Query: 113 RKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEP---E 169
++ ++ + YY+++ + + ++ PP Q PP + ++P +
Sbjct: 449 -QQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQ-----PPYSQQPPSQTPHAQPSYQQ 502
Query: 170 EPSGQAGGLQ 179
+P Q LQ
Sbjct: 503 QPQSQPPQLQ 512
Score = 37.0 bits (84), Expect = 0.080
Identities = 53/230 (23%), Positives = 76/230 (33%), Gaps = 11/230 (4%)
Query: 2 LSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPR 61
LS + + AAAAA +A S + S A Q G G GP A G TP+
Sbjct: 231 LSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGG--GPSAAGGGTPQ 288
Query: 62 KKEPPRASPP-GGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY 120
P A+P L P SA G S P + G + P + A
Sbjct: 289 ----PTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAA 344
Query: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD 180
S + ++ + P P +P ++ + P +P G
Sbjct: 345 AAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRP-QPYGGTNPYSQ 403
Query: 181 DSSGGYGDGQASGVEGAAFQSRLPHD-RMTSQEAACFPDIISGPQQTQKV 229
G Q G G + S+ P MT Q A + G TQ++
Sbjct: 404 QQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRA--QSAMGGLSYTQQI 451
Score = 33.9 bits (76), Expect = 0.68
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 20 GTEA----GPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLA 75
GTE G T+G S + E + PA P G R P SP G A
Sbjct: 652 GTEGALSPGVSTSGISSSQGE-QSNPAQSPFSPHTSPHLPGIRGPSP------SPVGSPA 704
Query: 76 EPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEY 135
S P VPG+ P P G+ S + + M++S ++++D
Sbjct: 705 SVAQSRSGPLSPAAVPGNQMP-----PRPPSGQSDS------IMHPSMNQS--SIAQDRG 751
Query: 136 YSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG-----QAGGLQDDSSGGYG-DG 189
Y + P P + P+ + P +PSG G Q +S G YG G
Sbjct: 752 YMQRN-----------PQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQG 800
Query: 190 QASGVEG 196
G +G
Sbjct: 801 GQYGPQG 807
Score = 32.7 bits (73), Expect = 1.5
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 4 GKKAAAAAA-------AAAAAATGTEAGPGTAGGSE--NGSEVAAQPAGLSGPAEVGPGA 54
G+ AAAAAA AA + G GP G E +G+E G + GPGA
Sbjct: 37 GEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGA 96
Query: 55 VGE-RTPRKKEPPRASPPGGLAEPPGSAG 82
+ + PR + L EPPG G
Sbjct: 97 EPDLKNSNGNAGPRPALNNNLTEPPGGGG 125
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 46.2 bits (108), Expect = 1e-04
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 7 AAAAAAAAAAAATGTE-------AGPGTAGGSENGSEVAAQPAGLSGPAEVG---PGAVG 56
AAAAAAAAAAA+ G + PG++GG G +A P S ++G P G
Sbjct: 339 AAAAAAAAAAASGGAQQRSHHAPMSPGSSGG--GGQPLARTPQPSSPMDQMGKMRPQPYG 396
Query: 57 ERTPRKKEPPRASPP----GGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSR 112
P ++ S P G +P GS PQ P + G A G++ T
Sbjct: 397 GTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYT-------- 448
Query: 113 RKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEP---E 169
++ ++ + YY+++ + + ++ PP Q PP + ++P +
Sbjct: 449 -QQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQ-----PPYSQQPPSQTPHAQPSYQQ 502
Query: 170 EPSGQAGGLQ 179
+P Q LQ
Sbjct: 503 QPQSQPPQLQ 512
Score = 37.0 bits (84), Expect = 0.080
Identities = 53/230 (23%), Positives = 76/230 (33%), Gaps = 11/230 (4%)
Query: 2 LSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPR 61
LS + + AAAAA +A S + S A Q G G GP A G TP+
Sbjct: 231 LSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGG--GPSAAGGGTPQ 288
Query: 62 KKEPPRASPP-GGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY 120
P A+P L P SA G S P + G + P + A
Sbjct: 289 ----PTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAA 344
Query: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD 180
S + ++ + P P +P ++ + P +P G
Sbjct: 345 AAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRP-QPYGGTNPYSQ 403
Query: 181 DSSGGYGDGQASGVEGAAFQSRLPHD-RMTSQEAACFPDIISGPQQTQKV 229
G Q G G + S+ P MT Q A + G TQ++
Sbjct: 404 QQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRA--QSAMGGLSYTQQI 451
Score = 33.9 bits (76), Expect = 0.68
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 20 GTEA----GPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLA 75
GTE G T+G S + E + PA P G R P SP G A
Sbjct: 652 GTEGALSPGVSTSGISSSQGE-QSNPAQSPFSPHTSPHLPGIRGPSP------SPVGSPA 704
Query: 76 EPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEY 135
S P VPG+ P P G+ S + + M++S ++++D
Sbjct: 705 SVAQSRSGPLSPAAVPGNQMP-----PRPPSGQSDS------IMHPSMNQS--SIAQDRG 751
Query: 136 YSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG-----QAGGLQDDSSGGYG-DG 189
Y + P P + P+ + P +PSG G Q +S G YG G
Sbjct: 752 YMQRN-----------PQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQG 800
Query: 190 QASGVEG 196
G +G
Sbjct: 801 GQYGPQG 807
Score = 32.7 bits (73), Expect = 1.5
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 4 GKKAAAAAA-------AAAAAATGTEAGPGTAGGSE--NGSEVAAQPAGLSGPAEVGPGA 54
G+ AAAAAA AA + G GP G E +G+E G + GPGA
Sbjct: 37 GEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGA 96
Query: 55 VGE-RTPRKKEPPRASPPGGLAEPPGSAG 82
+ + PR + L EPPG G
Sbjct: 97 EPDLKNSNGNAGPRPALNNNLTEPPGGGG 125
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 45.8 bits (107), Expect = 2e-04
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 53 GAVGERTPRKKEPPRASPPG------GLAEPPGSAGPQAGPTVVPGSATPMETGIAETPE 106
G TP + P +PPG G +PP S P A T PG A ET E +
Sbjct: 2048 GKFANLTPSRTVPDSEAPPGWDRADSGPTQPPLSLSP-APETKRPGQAAKKET--KEPKK 2104
Query: 107 GRRTSRR---KRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEE 163
G R + K E D+ ++ DE ++ + E+EKK PPPPP + P+
Sbjct: 2105 GESWFFRWLPGKKKTEAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPPTSMPKTV 2164
Query: 164 NESEPEEP 171
+ P P
Sbjct: 2165 QAAPPALP 2172
Score = 32.3 bits (72), Expect = 2.0
Identities = 48/194 (24%), Positives = 72/194 (37%), Gaps = 31/194 (15%)
Query: 53 GAVGERTPRKKE--PPRASP---PGGLAEPPGSAGPQAGPTVVP---------------G 92
G V E R+K+ P A P PG L +PP + P V P
Sbjct: 633 GEVRETCVRQKQCRPAAALPDASPGNLEQPPDNMETLCAPQVCPLPLNSTTEAVHMLPHA 692
Query: 93 SATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKL- 151
A P++T + PE +R S R + V+ +L SE + A A +
Sbjct: 693 GAPPLDT-VYPAPE-KRPSARTQGPVKCESPATTLWAQSELPDFGGNVLLAPAAPALYVC 750
Query: 152 --PPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGDGQASGVEGAAFQSRLPHDRMT 209
P PP PPEE + A +Q S GG G + +E + +
Sbjct: 751 AKPQPPVVQPPEEAMSGQQSRNPSSAAPVQ--SRGGI--GASENLENPPKMGE--EEALQ 804
Query: 210 SQEAACFPDIISGP 223
SQ ++ + ++S P
Sbjct: 805 SQASSGYASLLSSP 818
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 45.8 bits (107), Expect = 2e-04
Identities = 62/284 (21%), Positives = 109/284 (38%), Gaps = 59/284 (20%)
Query: 104 TPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAP--PE 161
TPE ++ + +K Y + S+ + EE+ + + ++ P P + P+
Sbjct: 308 TPEAKKKNAKKGPSTPYTK--------SKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPK 359
Query: 162 EENESEPEEPSGQAGGLQDD----------SSGGYGDGQASGVEGAAFQSR-LPHDRMTS 210
N + E + GG D ++G D ++G +G ++ L D +T
Sbjct: 360 TVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTE 419
Query: 211 Q---------------------EAACFPDIISGPQQ--TQKVFLFIRNRTLQLWLDNPKI 247
Q E P+ +G + T +++L RN + + NP+
Sbjct: 420 QTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQE 479
Query: 248 QLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLP--TKKTGKVIIIG 305
LT A + L D + RVH++LE+ GLIN+ + +P P T ++
Sbjct: 480 YLTSTACRRNLAG----DVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLA 535
Query: 306 SGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADL 349
SGL + G V +A + G RKG + DL
Sbjct: 536 DTPSGLVPLQPKTPQGRQV---DADTKAG------RKGKELDDL 570
Score = 40.0 bits (92), Expect = 0.009
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 23/111 (20%)
Query: 3 SGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRK 62
+G A A A A+ AG G GS SE Q +GP + P +
Sbjct: 1009 AGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQ----- 1063
Query: 63 KEPPRASPPGGLAEPPGSAGPQAGPT----------VVPGSATPMETGIAE 103
P A PPG PPG GP P VPGS P G+A+
Sbjct: 1064 ---PGAVPPG--VPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHP---GVAD 1106
Score = 38.9 bits (89), Expect = 0.021
Identities = 37/131 (28%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 61 RKKEPPRASPPGGLAEPP-GSAGPQA--GPTVVPGSATPMETGIAETPEGRRTSRRKRAK 117
++++PP A PPG PP G+AGP A G V P S P G P S
Sbjct: 988 QQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPS------ 1041
Query: 118 VEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGG 177
E S A + + + A +PPP P P N+ P PS G
Sbjct: 1042 -EQIGQAGSTAGPQQQQPAGAPQPGA---VPPGVPPPGPHGPSPFPNQQTP--PSMMPGA 1095
Query: 178 LQDDSSGGYGD 188
+ G D
Sbjct: 1096 VPGSGHPGVAD 1106
Score = 35.4 bits (80), Expect = 0.23
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 8 AAAAAAAAAAATGTEAGPGTAGGSENGSEVAA-------QPAGLSGPAEVGPGAV--GER 58
A A A+ A G+ A PG+ G SE + + QPAG P V PG G
Sbjct: 1018 AVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPH 1077
Query: 59 TPR---KKEPPRASPPG--------GLAEPPGSAGPQAGPTVVPGSATPM 97
P ++ P + PG G+A+ PG+ P PG+ TP+
Sbjct: 1078 GPSPFPNQQTPPSMMPGAVPGSGHPGVAD-PGTPLPPDPTAPSPGTVTPV 1126
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 45.8 bits (107), Expect = 2e-04
Identities = 62/284 (21%), Positives = 109/284 (38%), Gaps = 59/284 (20%)
Query: 104 TPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAP--PE 161
TPE ++ + +K Y + S+ + EE+ + + ++ P P + P+
Sbjct: 308 TPEAKKKNAKKGPSTPYTK--------SKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPK 359
Query: 162 EENESEPEEPSGQAGGLQDD----------SSGGYGDGQASGVEGAAFQSR-LPHDRMTS 210
N + E + GG D ++G D ++G +G ++ L D +T
Sbjct: 360 TVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTE 419
Query: 211 Q---------------------EAACFPDIISGPQQ--TQKVFLFIRNRTLQLWLDNPKI 247
Q E P+ +G + T +++L RN + + NP+
Sbjct: 420 QTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQE 479
Query: 248 QLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLP--TKKTGKVIIIG 305
LT A + L D + RVH++LE+ GLIN+ + +P P T ++
Sbjct: 480 YLTSTACRRNLAG----DVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLA 535
Query: 306 SGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADL 349
SGL + G V +A + G RKG + DL
Sbjct: 536 DTPSGLVPLQPKTPQGRQV---DADTKAG------RKGKELDDL 570
Score = 39.7 bits (91), Expect = 0.012
Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 20/104 (19%)
Query: 3 SGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRK 62
+G A A A A+ AG G GS SE Q +GP + P +
Sbjct: 1009 AGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQ----- 1063
Query: 63 KEPPRASPPGGLAEPPGSAGPQAGPT----------VVPGSATP 96
P A PPG PPG GP P VPGS P
Sbjct: 1064 ---PGAVPPG--VPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHP 1102
Score = 38.1 bits (87), Expect = 0.036
Identities = 43/146 (29%), Positives = 54/146 (36%), Gaps = 17/146 (11%)
Query: 61 RKKEPPRASPPGGLAEPP-GSAGPQA--GPTVVPGSATPMETGIAETPEGRRTSRRKRAK 117
++++PP A PPG PP G+AGP A G V P S P G P S
Sbjct: 988 QQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPS------ 1041
Query: 118 VEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGG 177
E S A + + + A +PPP P P N+ P PS G
Sbjct: 1042 -EQIGQAGSTAGPQQQQPAGAPQPGA---VPPGVPPPGPHGPSPFPNQQTP--PSMMPGA 1095
Query: 178 LQDDSSGGYGDGQASGVEGAAFQSRL 203
+ SG G S AA Q L
Sbjct: 1096 V--PGSGHPGVAAQSPAIVAAVQGNL 1119
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 45.8 bits (107), Expect = 2e-04
Identities = 42/120 (35%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 9 AAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSG------PAEVGPGAVGERTPRK 62
AAAAAAAA A+ AG T GG G A+ GL G P P A RT
Sbjct: 16 AAAAAAAAVASAASAGNVTGGGGAAGQVDASPGPGLRGEPSHPFPRATAPTAQAPRT--- 72
Query: 63 KEPPRASPPGGLAEPPGSAGPQAGP---TVVPGSAT---PMETGIAETPEGRRTSRRKRA 116
PPRA+ LA + P+ P T P S T P+ P RTS +A
Sbjct: 73 -GPPRATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQA 131
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.4 bits (106), Expect = 2e-04
Identities = 55/210 (26%), Positives = 73/210 (34%), Gaps = 44/210 (20%)
Query: 19 TGTEAGPGTAG-GSENGSEVAAQPAGLSG-------------------PAEVG-PGAVGE 57
TG PG AG E G + A P+G G P E G PG VG
Sbjct: 638 TGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 697
Query: 58 RTPRKKEPPRASP-------PGGLAEPPGSAGPQ--AGPTVVPGSATPMETGIAETPEGR 108
R R R SP P GL PG+ GP+ +GP PG A+ P G
Sbjct: 698 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG---------AQGPPGL 748
Query: 109 RTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEP 168
+ +R ++ E ++ + PP P E+ E P
Sbjct: 749 QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP 808
Query: 169 EEPSGQAGGLQDDSSGGYGDGQASGVEGAA 198
P+G AG + G G+ +G G A
Sbjct: 809 PGPAGSAG-----ARGAPGERGETGPPGPA 833
Score = 38.9 bits (89), Expect = 0.021
Identities = 36/92 (39%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 19 TGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKE-----PPRASPPG- 72
TG + PG G S G + A+ PAG SGP PG VG P K+ P PPG
Sbjct: 1136 TGLQGLPGPPGPS--GDQGASGPAGPSGPRGP-PGPVG---PSGKDGANGIPGPIGPPGP 1189
Query: 73 -------GLAEPPGSAGPQAGPTVVPGSATPM 97
G A PPG+ GP GP PG M
Sbjct: 1190 RGRSGETGPAGPPGNPGP-PGPPGPPGPGIDM 1220
Score = 37.7 bits (86), Expect = 0.047
Identities = 56/198 (28%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 18 ATGTEAGPGTAGGS----ENGSEVAAQPAGL------SGPAEVGPGAVGERTPRKKEPPR 67
A G PG G S ENGS P GL +GPA GA G R + P
Sbjct: 298 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPA----GAAGARGNDGQPGP- 352
Query: 68 ASPPGGLAEPPGSAGPQAGPTV--VPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDE 125
A PPG GP GP PG+ A PEG + R +
Sbjct: 353 -------AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG 405
Query: 126 SLANLSEDEYYSEEERNAKAEKEKKLPP-PPPQAPPEEENESEPEEPSGQAG-----GLQ 179
+ N D + +A A P P P+ PP + + P P GQ G G +
Sbjct: 406 ASGNPGTDG-IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK 464
Query: 180 DDSSGGYGDGQASGVEGA 197
+ G G+ +G +GA
Sbjct: 465 GE-QGPKGEPGPAGPQGA 481
Score = 37.4 bits (85), Expect = 0.061
Identities = 54/195 (27%), Positives = 70/195 (35%), Gaps = 35/195 (17%)
Query: 20 GTEAGPGTAGGSENGSEVAAQPAGLSGPAEV----------GP----GAVGERTPRKKEP 65
G + PG +G + G P GL+GPA GP GA G + R +
Sbjct: 1005 GKQGAPGASG--DRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG 1062
Query: 66 PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDE 125
+P G PPGS GP AGPT G P G +R + R
Sbjct: 1063 AVGAP--GAPGPPGSPGP-AGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG--- 1116
Query: 126 SLANLSEDEYYSEEERNAKAEKE----KKLPPPPPQAPPEEENESEPEEPSGQAGGLQDD 181
+ E ER K + + LP PP P ++ S P PSG G
Sbjct: 1117 -----DKGEAGEPGERGLKGHRGFTGLQGLPGPP--GPSGDQGASGPAGPSGPRG--PPG 1167
Query: 182 SSGGYGDGQASGVEG 196
G G A+G+ G
Sbjct: 1168 PVGPSGKDGANGIPG 1182
Score = 37.0 bits (84), Expect = 0.080
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 21/196 (10%)
Query: 20 GTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPG-----GL 74
G PG G G + A P G P E GP + +P R PG GL
Sbjct: 507 GERGAPGNRGFP--GQDGLAGPKG--APGERGPSGLAGPKGANGDPGRPGEPGLPGARGL 562
Query: 75 AEPPGSAGPQ--AGPTVVPG-SATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLS 131
PG AGPQ GP+ PG P G P+G R + +
Sbjct: 563 TGRPGDAGPQGKVGPSGAPGEDGRPGPPG----PQGARGQPGVMGFPGPKGANGEPGKAG 618
Query: 132 EDEYYSEEERNAKAEKEKK---LPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGD 188
E K+ + PP P P E E PSG G G G+
Sbjct: 619 EKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG--LPGPPGPPGE 676
Query: 189 GQASGVEGAAFQSRLP 204
G G +G ++ P
Sbjct: 677 GGKPGDQGVPGEAGAP 692
Score = 36.2 bits (82), Expect = 0.14
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 13 AAAAAATGTEAGPGTAG--GSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASP 70
A AA A G + PG AG G + P E GP G R P + PR P
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP--TGARGPEGAQGPRGEP 395
Query: 71 PGGLAEPPGSAGPQAGPTV--VPGS-ATPMETGIAETP 105
G PG AG P +PG+ + GIA P
Sbjct: 396 --GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 431
Score = 35.4 bits (80), Expect = 0.23
Identities = 51/193 (26%), Positives = 67/193 (34%), Gaps = 26/193 (13%)
Query: 19 TGTEAGPGTAGGSENGSEVAAQ-PAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEP 77
TG PG AG + EV PAG +G A PG GE P A PPG +P
Sbjct: 788 TGPIGPPGPAGANGEKGEVGPPGPAGSAG-ARGAPGERGETGP-PGPAGFAGPPGADGQP 845
Query: 78 --------------PGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREM 123
G+ GPQ GP+ PG P TG+ P+G R ++ +
Sbjct: 846 GAKGEQGEAGQKGDAGAPGPQ-GPSGAPGPQGP--TGVT-GPKGARGAQGPPGATGFPGA 901
Query: 124 DESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSS 183
+ + + K+ PP E + P+G G
Sbjct: 902 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG-----EK 956
Query: 184 GGYGDGQASGVEG 196
G GD SG EG
Sbjct: 957 GEPGDDGPSGAEG 969
Score = 32.0 bits (71), Expect = 2.6
Identities = 51/194 (26%), Positives = 64/194 (32%), Gaps = 27/194 (13%)
Query: 18 ATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRAS-----PPG 72
A G + PG G V P G +G PG G P K+ P+ + PPG
Sbjct: 886 ARGAQGPPGATGFPGAAGRVG--PPGSNG----NPGPPGPPGPSGKDGPKGARGDSGPPG 939
Query: 73 GLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSE 132
E PG GP AGP G AE P G + +R V
Sbjct: 940 RAGE-PGLQGP-AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL 997
Query: 133 DEYYSEEERNAKAEKEKKLPPPPPQAPP-------EEENESEP--EEPSGQAGGLQDDSS 183
E + PP P PP E E P + P G +D ++
Sbjct: 998 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAA 1052
Query: 184 GGYGDGQASGVEGA 197
G GD +G GA
Sbjct: 1053 GVKGDRGETGAVGA 1066
Score = 32.0 bits (71), Expect = 2.6
Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 28/118 (23%)
Query: 12 AAAAAAATGTEAGPGTAGGS----ENGSEVAAQPAGLSGPAEV-------GP-------G 53
A A A G PG AG + + G A P G SGPA GP G
Sbjct: 1063 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1122
Query: 54 AVGERTPRKKE----------PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGI 101
GER + PP S G + P G +GP+ P V S GI
Sbjct: 1123 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI 1180
Score = 30.0 bits (66), Expect = 9.8
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 16 AAATGTEAGPGTAGGSENGSEVAAQ--PAGLSGPA-EVGP-------GAVGERTPRKKEP 65
A A+G G G + ++ P G GPA E GP G G PR ++
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 153
Query: 66 PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEG 107
+P G PPG GP P + A M G E G
Sbjct: 154 EPGTP--GNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGG 193
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 45.4 bits (106), Expect = 2e-04
Identities = 55/210 (26%), Positives = 73/210 (34%), Gaps = 44/210 (20%)
Query: 19 TGTEAGPGTAG-GSENGSEVAAQPAGLSG-------------------PAEVG-PGAVGE 57
TG PG AG E G + A P+G G P E G PG VG
Sbjct: 569 TGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 628
Query: 58 RTPRKKEPPRASP-------PGGLAEPPGSAGPQ--AGPTVVPGSATPMETGIAETPEGR 108
R R R SP P GL PG+ GP+ +GP PG A+ P G
Sbjct: 629 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG---------AQGPPGL 679
Query: 109 RTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEP 168
+ +R ++ E ++ + PP P E+ E P
Sbjct: 680 QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP 739
Query: 169 EEPSGQAGGLQDDSSGGYGDGQASGVEGAA 198
P+G AG + G G+ +G G A
Sbjct: 740 PGPAGSAG-----ARGAPGERGETGPPGPA 764
Score = 38.9 bits (89), Expect = 0.021
Identities = 36/92 (39%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 19 TGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKE-----PPRASPPG- 72
TG + PG G S G + A+ PAG SGP PG VG P K+ P PPG
Sbjct: 1067 TGLQGLPGPPGPS--GDQGASGPAGPSGPRGP-PGPVG---PSGKDGANGIPGPIGPPGP 1120
Query: 73 -------GLAEPPGSAGPQAGPTVVPGSATPM 97
G A PPG+ GP GP PG M
Sbjct: 1121 RGRSGETGPAGPPGNPGP-PGPPGPPGPGIDM 1151
Score = 37.7 bits (86), Expect = 0.047
Identities = 56/198 (28%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 18 ATGTEAGPGTAGGS----ENGSEVAAQPAGL------SGPAEVGPGAVGERTPRKKEPPR 67
A G PG G S ENGS P GL +GPA GA G R + P
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPA----GAAGARGNDGQPGP- 283
Query: 68 ASPPGGLAEPPGSAGPQAGPTV--VPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDE 125
A PPG GP GP PG+ A PEG + R +
Sbjct: 284 -------AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG 336
Query: 126 SLANLSEDEYYSEEERNAKAEKEKKLPP-PPPQAPPEEENESEPEEPSGQAG-----GLQ 179
+ N D + +A A P P P+ PP + + P P GQ G G +
Sbjct: 337 ASGNPGTDG-IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK 395
Query: 180 DDSSGGYGDGQASGVEGA 197
+ G G+ +G +GA
Sbjct: 396 GE-QGPKGEPGPAGPQGA 412
Score = 37.4 bits (85), Expect = 0.061
Identities = 54/195 (27%), Positives = 70/195 (35%), Gaps = 35/195 (17%)
Query: 20 GTEAGPGTAGGSENGSEVAAQPAGLSGPAEV----------GP----GAVGERTPRKKEP 65
G + PG +G + G P GL+GPA GP GA G + R +
Sbjct: 936 GKQGAPGASG--DRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG 993
Query: 66 PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDE 125
+P G PPGS GP AGPT G P G +R + R
Sbjct: 994 AVGAP--GAPGPPGSPGP-AGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG--- 1047
Query: 126 SLANLSEDEYYSEEERNAKAEKE----KKLPPPPPQAPPEEENESEPEEPSGQAGGLQDD 181
+ E ER K + + LP PP P ++ S P PSG G
Sbjct: 1048 -----DKGEAGEPGERGLKGHRGFTGLQGLPGPP--GPSGDQGASGPAGPSGPRG--PPG 1098
Query: 182 SSGGYGDGQASGVEG 196
G G A+G+ G
Sbjct: 1099 PVGPSGKDGANGIPG 1113
Score = 37.0 bits (84), Expect = 0.080
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 21/196 (10%)
Query: 20 GTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPG-----GL 74
G PG G G + A P G P E GP + +P R PG GL
Sbjct: 438 GERGAPGNRGFP--GQDGLAGPKG--APGERGPSGLAGPKGANGDPGRPGEPGLPGARGL 493
Query: 75 AEPPGSAGPQ--AGPTVVPG-SATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLS 131
PG AGPQ GP+ PG P G P+G R + +
Sbjct: 494 TGRPGDAGPQGKVGPSGAPGEDGRPGPPG----PQGARGQPGVMGFPGPKGANGEPGKAG 549
Query: 132 EDEYYSEEERNAKAEKEKK---LPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGD 188
E K+ + PP P P E E PSG G G G+
Sbjct: 550 EKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG--LPGPPGPPGE 607
Query: 189 GQASGVEGAAFQSRLP 204
G G +G ++ P
Sbjct: 608 GGKPGDQGVPGEAGAP 623
Score = 36.2 bits (82), Expect = 0.14
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 13 AAAAAATGTEAGPGTAG--GSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASP 70
A AA A G + PG AG G + P E GP G R P + PR P
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP--TGARGPEGAQGPRGEP 326
Query: 71 PGGLAEPPGSAGPQAGPTV--VPGS-ATPMETGIAETP 105
G PG AG P +PG+ + GIA P
Sbjct: 327 --GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 362
Score = 35.4 bits (80), Expect = 0.23
Identities = 51/193 (26%), Positives = 67/193 (34%), Gaps = 26/193 (13%)
Query: 19 TGTEAGPGTAGGSENGSEVAAQ-PAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEP 77
TG PG AG + EV PAG +G A PG GE P A PPG +P
Sbjct: 719 TGPIGPPGPAGANGEKGEVGPPGPAGSAG-ARGAPGERGETGP-PGPAGFAGPPGADGQP 776
Query: 78 --------------PGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREM 123
G+ GPQ GP+ PG P TG+ P+G R ++ +
Sbjct: 777 GAKGEQGEAGQKGDAGAPGPQ-GPSGAPGPQGP--TGVT-GPKGARGAQGPPGATGFPGA 832
Query: 124 DESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSS 183
+ + + K+ PP E + P+G G
Sbjct: 833 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG-----EK 887
Query: 184 GGYGDGQASGVEG 196
G GD SG EG
Sbjct: 888 GEPGDDGPSGAEG 900
Score = 32.0 bits (71), Expect = 2.6
Identities = 51/194 (26%), Positives = 64/194 (32%), Gaps = 27/194 (13%)
Query: 18 ATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRAS-----PPG 72
A G + PG G V P G +G PG G P K+ P+ + PPG
Sbjct: 817 ARGAQGPPGATGFPGAAGRVG--PPGSNG----NPGPPGPPGPSGKDGPKGARGDSGPPG 870
Query: 73 GLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSE 132
E PG GP AGP G AE P G + +R V
Sbjct: 871 RAGE-PGLQGP-AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL 928
Query: 133 DEYYSEEERNAKAEKEKKLPPPPPQAPP-------EEENESEP--EEPSGQAGGLQDDSS 183
E + PP P PP E E P + P G +D ++
Sbjct: 929 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAA 983
Query: 184 GGYGDGQASGVEGA 197
G GD +G GA
Sbjct: 984 GVKGDRGETGAVGA 997
Score = 32.0 bits (71), Expect = 2.6
Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 28/118 (23%)
Query: 12 AAAAAAATGTEAGPGTAGGS----ENGSEVAAQPAGLSGPAEV-------GP-------G 53
A A A G PG AG + + G A P G SGPA GP G
Sbjct: 994 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053
Query: 54 AVGERTPRKKE----------PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGI 101
GER + PP S G + P G +GP+ P V S GI
Sbjct: 1054 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI 1111
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 45.4 bits (106), Expect = 2e-04
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 22/108 (20%)
Query: 450 EQIEHWKKIVKTQ---------EELKELLNKMVN-LKEKIKELHQQYKEAS-------EV 492
E+I K +K+Q E++KE +N+M++ L +++ EL Q YKEA +
Sbjct: 609 EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKR 668
Query: 493 KPPRDITAEFLVKSKHRDLTAL-----CKEYDELAETQGKLEEKLQEL 535
K D+TAE++ K++H L L K D L+E + + + L EL
Sbjct: 669 KSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLNEL 716
Score = 38.1 bits (87), Expect = 0.036
Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 367 KQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLN 426
+Q+ L ++++ EA + V++ + E+V + E +S LS +L +
Sbjct: 435 QQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLK-ETQS 493
Query: 427 NKPVSLGQALEVVIQLQEKHVKDEQIE---HWKKIVKTQEELKELLNKMVNL-------K 476
++ + L V Q++ V E ++ H+ ++ T+EE+ L + N K
Sbjct: 494 KYEEAMKEVLSVQKQMKLGLVSPESMDNYSHFHELRVTEEEINVLKQDLQNALEESERNK 553
Query: 477 EKIKELHQQYKEASE---VKPPRDITAEF------LVKSKHRDLTALCKEYDELAETQGK 527
EK++EL ++ E + +KPP + E ++++ +++ L ++Y E E K
Sbjct: 554 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 613
Query: 528 LEEKLQELEANPPSD 542
L++ L+ SD
Sbjct: 614 LKDTLKSQMTQEASD 628
Score = 30.0 bits (66), Expect = 9.8
Identities = 41/198 (20%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 368 QVNMELAKIKQKCPLY-EANGQADTVKVPKEKDEMVEQ-----EFNRLLEATSYLSHQLD 421
++N +++++ Q LY EA + + + K +++ + E +L++ T+ +S
Sbjct: 643 ELNKQVSELSQ---LYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN-VSRAKA 698
Query: 422 FNVLNNKPVSLGQALEVVIQLQE-----KHVKDEQIEHWKKIVKTQEELKELLNKMVNLK 476
+ L+ + L + QL++ K EH + I + KE+ K+ NLK
Sbjct: 699 EDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLK 758
Query: 477 EKI--KELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQE 534
E + KE+ E ++ +T + +S + L + + E++ KL+E ++E
Sbjct: 759 EHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLE--SEVSVLASKLKESVKE 816
Query: 535 LEANPPSDVYLSSRDRQI 552
E V + S Q+
Sbjct: 817 KEKVHSEVVQIRSEVSQV 834
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 45.4 bits (106), Expect = 2e-04
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 22/108 (20%)
Query: 450 EQIEHWKKIVKTQ---------EELKELLNKMVN-LKEKIKELHQQYKEAS-------EV 492
E+I K +K+Q E++KE +N+M++ L +++ EL Q YKEA +
Sbjct: 598 EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKR 657
Query: 493 KPPRDITAEFLVKSKHRDLTAL-----CKEYDELAETQGKLEEKLQEL 535
K D+TAE++ K++H L L K D L+E + + + L EL
Sbjct: 658 KSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLNEL 705
Score = 38.1 bits (87), Expect = 0.036
Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 367 KQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLN 426
+Q+ L ++++ EA + V++ + E+V + E +S LS +L +
Sbjct: 424 QQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLK-ETQS 482
Query: 427 NKPVSLGQALEVVIQLQEKHVKDEQIE---HWKKIVKTQEELKELLNKMVNL-------K 476
++ + L V Q++ V E ++ H+ ++ T+EE+ L + N K
Sbjct: 483 KYEEAMKEVLSVQKQMKLGLVSPESMDNYSHFHELRVTEEEINVLKQDLQNALEESERNK 542
Query: 477 EKIKELHQQYKEASE---VKPPRDITAEF------LVKSKHRDLTALCKEYDELAETQGK 527
EK++EL ++ E + +KPP + E ++++ +++ L ++Y E E K
Sbjct: 543 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 602
Query: 528 LEEKLQELEANPPSD 542
L++ L+ SD
Sbjct: 603 LKDTLKSQMTQEASD 617
Score = 30.0 bits (66), Expect = 9.8
Identities = 41/198 (20%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 368 QVNMELAKIKQKCPLY-EANGQADTVKVPKEKDEMVEQ-----EFNRLLEATSYLSHQLD 421
++N +++++ Q LY EA + + + K +++ + E +L++ T+ +S
Sbjct: 632 ELNKQVSELSQ---LYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN-VSRAKA 687
Query: 422 FNVLNNKPVSLGQALEVVIQLQE-----KHVKDEQIEHWKKIVKTQEELKELLNKMVNLK 476
+ L+ + L + QL++ K EH + I + KE+ K+ NLK
Sbjct: 688 EDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLK 747
Query: 477 EKI--KELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQE 534
E + KE+ E ++ +T + +S + L + + E++ KL+E ++E
Sbjct: 748 EHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLE--SEVSVLASKLKESVKE 805
Query: 535 LEANPPSDVYLSSRDRQI 552
E V + S Q+
Sbjct: 806 KEKVHSEVVQIRSEVSQV 823
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 45.4 bits (106), Expect = 2e-04
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 22/108 (20%)
Query: 450 EQIEHWKKIVKTQ---------EELKELLNKMVN-LKEKIKELHQQYKEAS-------EV 492
E+I K +K+Q E++KE +N+M++ L +++ EL Q YKEA +
Sbjct: 577 EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKR 636
Query: 493 KPPRDITAEFLVKSKHRDLTAL-----CKEYDELAETQGKLEEKLQEL 535
K D+TAE++ K++H L L K D L+E + + + L EL
Sbjct: 637 KSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLNEL 684
Score = 38.1 bits (87), Expect = 0.036
Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 367 KQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLN 426
+Q+ L ++++ EA + V++ + E+V + E +S LS +L +
Sbjct: 403 QQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLK-ETQS 461
Query: 427 NKPVSLGQALEVVIQLQEKHVKDEQIE---HWKKIVKTQEELKELLNKMVNL-------K 476
++ + L V Q++ V E ++ H+ ++ T+EE+ L + N K
Sbjct: 462 KYEEAMKEVLSVQKQMKLGLVSPESMDNYSHFHELRVTEEEINVLKQDLQNALEESERNK 521
Query: 477 EKIKELHQQYKEASE---VKPPRDITAEF------LVKSKHRDLTALCKEYDELAETQGK 527
EK++EL ++ E + +KPP + E ++++ +++ L ++Y E E K
Sbjct: 522 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 581
Query: 528 LEEKLQELEANPPSD 542
L++ L+ SD
Sbjct: 582 LKDTLKSQMTQEASD 596
Score = 30.0 bits (66), Expect = 9.8
Identities = 41/198 (20%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 368 QVNMELAKIKQKCPLY-EANGQADTVKVPKEKDEMVEQ-----EFNRLLEATSYLSHQLD 421
++N +++++ Q LY EA + + + K +++ + E +L++ T+ +S
Sbjct: 611 ELNKQVSELSQ---LYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN-VSRAKA 666
Query: 422 FNVLNNKPVSLGQALEVVIQLQE-----KHVKDEQIEHWKKIVKTQEELKELLNKMVNLK 476
+ L+ + L + QL++ K EH + I + KE+ K+ NLK
Sbjct: 667 EDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLK 726
Query: 477 EKI--KELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQE 534
E + KE+ E ++ +T + +S + L + + E++ KL+E ++E
Sbjct: 727 EHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLE--SEVSVLASKLKESVKE 784
Query: 535 LEANPPSDVYLSSRDRQI 552
E V + S Q+
Sbjct: 785 KEKVHSEVVQIRSEVSQV 802
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,067,852
Number of Sequences: 37866
Number of extensions: 2104098
Number of successful extensions: 26005
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 1425
Number of HSP's that attempted gapping in prelim test: 17264
Number of HSP's gapped (non-prelim): 8286
length of query: 876
length of database: 18,247,518
effective HSP length: 111
effective length of query: 765
effective length of database: 14,044,392
effective search space: 10743959880
effective search space used: 10743959880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.