Guide to the Human Genome
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Search of human proteins with 58761498

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like
[Homo sapiens]
         (320 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   670   0.0  
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   670   0.0  
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   645   0.0  
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   621   e-178
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   556   e-159
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   556   e-159
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   554   e-158
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   455   e-128
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   412   e-115
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   412   e-115
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   297   1e-80
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   197   8e-51
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   195   4e-50
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   194   1e-49
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   192   3e-49
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   179   4e-45
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   170   2e-42
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   167   9e-42
gi|4505255 musashi 1 [Homo sapiens]                                   161   6e-40
gi|20373175 musashi 2 isoform a [Homo sapiens]                        160   1e-39
gi|25121993 musashi 2 isoform b [Homo sapiens]                        156   3e-38
gi|239747524 PREDICTED: similar to serum response factor-related...   147   1e-35
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         143   2e-34
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         143   2e-34
gi|6678271 TAR DNA binding protein [Homo sapiens]                     115   5e-26
gi|55956788 nucleolin [Homo sapiens]                                  102   6e-22
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           96   4e-20
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          96   4e-20
gi|4502847 cold inducible RNA binding protein [Homo sapiens]           96   4e-20
gi|55956899 keratin 9 [Homo sapiens]                                   86   6e-17

>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  670 bits (1729), Expect = 0.0
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240

Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
           GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300

Query: 301 NQGGYGVSSSSSSYGSGRRF 320
           NQGGYGVSSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  670 bits (1729), Expect = 0.0
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240

Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
           GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300

Query: 301 NQGGYGVSSSSSSYGSGRRF 320
           NQGGYGVSSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  645 bits (1664), Expect = 0.0
 Identities = 310/320 (96%), Positives = 311/320 (97%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMN  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           L KQEMASASSSQRGR GSGNFGGGRG GFGGNDNFGRGGNFSGRGGFGGS GGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240

Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
           GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300

Query: 301 NQGGYGVSSSSSSYGSGRRF 320
           NQGGYG SSSSSSYGSGRRF
Sbjct: 301 NQGGYGGSSSSSSYGSGRRF 320


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  621 bits (1601), Expect = e-178
 Identities = 310/372 (83%), Positives = 311/372 (83%), Gaps = 52/372 (13%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMN  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           L KQEMASASSSQRGR GSGNFGGGRG GFGGNDNFGRGGNFSGRGGFGGS GGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240

Query: 241 GDGYNGFGND-------------------------------------------------- 250
           GDGYNGFGND                                                  
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300

Query: 251 --GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308
             GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+NQGGYG S
Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360

Query: 309 SSSSSYGSGRRF 320
           SSSSSYGSGRRF
Sbjct: 361 SSSSSYGSGRRF 372


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  556 bits (1434), Expect = e-159
 Identities = 272/320 (85%), Positives = 283/320 (88%), Gaps = 5/320 (1%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
            Y TVEEVDAAMN  PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235

Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
            DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKPQ
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295

Query: 301 NQGGYGVSSSSSSYGSGRRF 320
           NQGGYG SSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  556 bits (1434), Expect = e-159
 Identities = 272/320 (85%), Positives = 283/320 (88%), Gaps = 5/320 (1%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
            Y TVEEVDAAMN  PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235

Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
            DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKPQ
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295

Query: 301 NQGGYGVSSSSSSYGSGRRF 320
           NQGGYG SSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  554 bits (1428), Expect = e-158
 Identities = 271/320 (84%), Positives = 282/320 (88%), Gaps = 5/320 (1%)

Query: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
            Y TVEEVDAAMN  PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
           L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GG GGS     +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235

Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
            DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKPQ
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295

Query: 301 NQGGYGVSSSSSSYGSGRRF 320
           NQGGYG SSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  455 bits (1171), Expect = e-128
 Identities = 242/365 (66%), Positives = 261/365 (71%), Gaps = 65/365 (17%)

Query: 7   PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
           PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY+ VE
Sbjct: 28  PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87

Query: 67  EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
           EVDAAM   PHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LRDYFE
Sbjct: 88  EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147

Query: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
           +YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+ GHNCEV+KAL KQEM
Sbjct: 148 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207

Query: 187 ASASSSQRGR-RGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG--GGYGGSGDG 243
            SA  SQRGR  GSGNF G  G+  GG  NFGRGGNF GRGG+GG  GG  G YGG   G
Sbjct: 208 QSA-GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266

Query: 244 YNGFGND----------------------------------------------GSNFGGG 257
           YNGFG D                                              G N+GGG
Sbjct: 267 YNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGG 326

Query: 258 GSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPQNQGGYGVSSSSSSYG 315
           G+YNDFGNY+  Q SN+GPMKGG+FGGRSSG PYG            GGYG    S  YG
Sbjct: 327 GNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GGYGSGGGSGGYG 374

Query: 316 SGRRF 320
           S RRF
Sbjct: 375 S-RRF 378



 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 31/97 (31%), Positives = 56/97 (57%)

Query: 4   SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
           S  P     ++K+F+GG+  +T + +LR +FE++G +    VM D  + + RGF FVT+ 
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175

Query: 64  TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGA 100
             + VD  +    H ++G   E K+A+S+++ Q  G+
Sbjct: 176 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 28/247 (11%)

Query: 93  EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
           E+   P     ++K+F+GG+  +T +  LR++FE++G +    +M D  + + RGF FVT
Sbjct: 23  EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82

Query: 153 FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGG---RGDG 209
           +   + VD  +  + H V G   E ++A+ +++     +    ++    F GG     + 
Sbjct: 83  YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139

Query: 210 FGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-- 267
           +   D F + G             G   G +   ++   +D  +      Y+    +N  
Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD--DHDTVDKIVVQKYHTINGHNCE 197

Query: 268 -------NQSSNFGPMKG-----GNFGGRSSGPYGGGGQYFAKPQN---QGGYGVSSSSS 312
                   +  + G  +G     GNF GR  G +GGGG  F +  N   +GGYG     S
Sbjct: 198 VKKALSKQEMQSAGSQRGRGGGSGNFMGR-GGNFGGGGGNFGRGGNFGGRGGYGGGGGGS 256

Query: 313 --SYGSG 317
             SYG G
Sbjct: 257 RGSYGGG 263


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  412 bits (1058), Expect = e-115
 Identities = 210/334 (62%), Positives = 240/334 (71%), Gaps = 35/334 (10%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15  REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

Query: 68  VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           VDAAM   PH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+ GHN EVRKAL +QEM 
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194

Query: 188 SASSSQRGRRGS----------GNFGGGRGDGF-GGNDNFGRGGNFS----------GRG 226
              SS+ GR G+          GNFG G G  F GG+D +G G  F           G G
Sbjct: 195 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 254

Query: 227 GFGGSCG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274
            FGGS G GGG GG G G  G+GN G  +GGG           G+YNDFGNYN Q SN+G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 314

Query: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPQNQGGYG 306
           PMK GNFGG     GPYGGG          GGYG
Sbjct: 315 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYG 348



 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 30/94 (31%), Positives = 55/94 (58%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQ 96
              + VD  +    H ++G   E ++A+SR++ Q
Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  412 bits (1058), Expect = e-115
 Identities = 210/334 (62%), Positives = 240/334 (71%), Gaps = 35/334 (10%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 68  VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           VDAAM   PH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+ GHN EVRKAL +QEM 
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182

Query: 188 SASSSQRGRRGS----------GNFGGGRGDGF-GGNDNFGRGGNFS----------GRG 226
              SS+ GR G+          GNFG G G  F GG+D +G G  F           G G
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242

Query: 227 GFGGSCG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274
            FGGS G GGG GG G G  G+GN G  +GGG           G+YNDFGNYN Q SN+G
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302

Query: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPQNQGGYG 306
           PMK GNFGG     GPYGGG          GGYG
Sbjct: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYG 336



 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 30/94 (31%), Positives = 55/94 (58%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQ 96
              + VD  +    H ++G   E ++A+SR++ Q
Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  297 bits (760), Expect = 1e-80
 Identities = 157/307 (51%), Positives = 197/307 (64%), Gaps = 10/307 (3%)

Query: 9   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
           E  QL KLFIGGL+ +T++  LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE 
Sbjct: 2   ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61

Query: 69  DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
           DAAM  +PH VDG  VE KRAVSREDS RPGAH  VKK+FVGG+K D  E  L ++F Q+
Sbjct: 62  DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121

Query: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
           G +E  EI+ D+ SGKKRGF FV F +HD+ DK  + K+H ++GH  EV+KA+PK+++ S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181

Query: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNF---GRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
                 G R S    GGRG G G + N    G GG ++  GG+GG  GGGGY   G G  
Sbjct: 182 GGGGG-GSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYNAYGGGGG 239

Query: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQYFAKPQNQ 302
           G    GS++G G  +  FG+Y+   S++GPMK G  GG     +GG    G Y       
Sbjct: 240 GSSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297

Query: 303 GGYGVSS 309
           GGYG SS
Sbjct: 298 GGYGGSS 304



 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 71/264 (26%), Positives = 103/264 (39%), Gaps = 58/264 (21%)

Query: 4   SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
           SA P    +++KLF+GGL  +  +  L  HF Q+GT+    ++ D  + + RGFGFV + 
Sbjct: 88  SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147

Query: 64  TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
             +  D A     H + G  VE K+AV +ED    G          GG +        R 
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198

Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
                           RG G+          D + + K     Y++  G+          
Sbjct: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223

Query: 184 QEMASASSSQRGRRGSGNFGGGRGDGFGGND---NFGRGGNFS-GRGGFGGSCGGGGYGG 239
                      G    G  GG  G  +GG+D    FG  G++S  +  +G    GGG GG
Sbjct: 224 -----GGGGGGGYNAYGGGGG--GSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGG 276

Query: 240 SGDGYNGFGNDG---SNFGGGGSY 260
            G  + G  N G     +GGGG Y
Sbjct: 277 GGSSWGGRSNSGPYRGGYGGGGGY 300



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGY 237
           S   S  G   SG  GGG G  +GG  N    G + G  G GG  GG  +
Sbjct: 259 SQHQSSYGPMKSGGGGGGGGSSWGGRSN---SGPYRGGYGGGGGYGGSSF 305


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  197 bits (502), Expect = 8e-51
 Identities = 109/288 (37%), Positives = 165/288 (57%), Gaps = 17/288 (5%)

Query: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +K  + K  E   K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +   E VD  M+   HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
           R+YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSG 241
            K++       Q G RG G  G  RG G G + N+ +G +     G+      G YG + 
Sbjct: 240 SKEQY--QQQQQWGSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNS 290

Query: 242 DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
            GY G+G  G ++ G  +Y  +G+Y+NQ S +G +        S  PY
Sbjct: 291 QGYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  195 bits (496), Expect = 4e-50
 Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 17/275 (6%)

Query: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
           K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV +   E VD  M+ 
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
             HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+YF  +G++E I
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211

Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
           E+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+ K++       Q 
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQW 269

Query: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254
           G RG G  G  RG G G + N+ +G +     G+      G YG +  GY G+G  G ++
Sbjct: 270 GSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNSQGYGGYG--GYDY 320

Query: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
            G  +Y  +G+Y+NQ S +G +        S  PY
Sbjct: 321 TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +K+   KEP  ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T
Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
           +   E V   M    H V     E K A+S+E  Q+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  194 bits (492), Expect = 1e-49
 Identities = 101/290 (34%), Positives = 156/290 (53%), Gaps = 10/290 (3%)

Query: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           SK  + K  +   K+FIGGLS++T+ + L  +  ++G + DC +  DP T RSRGFGFV 
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195

Query: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +     VD  +    HK+DG++++PKRA + +  + P      KK+FVGG+  DT E  +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
           ++YF  +G+IE IE+  D  + ++RGF F+T+ D + V K++  +YH +    CE++ A 
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309

Query: 182 PKQEMASASSSQRGRRG--SGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG 239
           PK+        Q+G RG  +G  GG RG G G   N+ +G N     G+G      G   
Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369

Query: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
           +  GY G+   G N+G  G    + +Y+ Q S +G  K    GG     Y
Sbjct: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYG--KASRGGGNHQNNY 417


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  192 bits (488), Expect = 3e-49
 Identities = 104/276 (37%), Positives = 160/276 (57%), Gaps = 24/276 (8%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           K  E   K+F+GGLS++T+ + L+ +F ++G + DC +  DPNT RSRGFGF+ +     
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 68  VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           V+  ++   H++DGRV++PK+A++ +          VKKIFVGG+  +  E  +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
           +G+IE IE+  D    K+RGF F+TF + + V K++ +K+HTV G  CE++ A PK+  +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 186 MASASSSQRGRRGSGNFGGGRGDGFGG-NDNFGRG-GNFSGRG-----GFGGSCGG---- 234
                S  RG R  GN G G G G GG + ++ +G GN+  +G     G+G   GG    
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296

Query: 235 -GGYGGSGDGYN---GFGNDGSNFGGGGSYNDFGNY 266
             GY G G GY+   G  N G +   GG  N++  Y
Sbjct: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           K A   + + ++K+F+GGL+ E T+E +R +F ++G +    +  DP   + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
              E V   +    H V G   E K A  +E  Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  179 bits (453), Expect = 4e-45
 Identities = 88/222 (39%), Positives = 136/222 (61%), Gaps = 15/222 (6%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           K  E   K+F+GGLS++T+ + L+ +F ++G + DC +  DPNT RSRGFGF+ +     
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 68  VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           V+  ++   H++DGRV++PK+A++ +          VKKIFVGG+  +  E  +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
           +G+IE IE+  D    K+RGF F+TF + + V K++ +K+HTV G  CE++ A PK+  +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 186 MASASSSQRGRRGSGNFGGGRGDGFG--GNDNFG----RGGN 221
                S  RG R  GN G G G G G  G+ N+G    RGG+
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGH 278



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           K A   + + ++K+F+GGL+ E T+E +R +F ++G +    +  DP   + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
              E V   +    H V G   E K A  +E  Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  170 bits (430), Expect = 2e-42
 Identities = 92/230 (40%), Positives = 136/230 (59%), Gaps = 12/230 (5%)

Query: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +K  + K  E   K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +   E VD  M+   HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
           R+YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
            K++       Q+ + GS     GR  G GG+   G  G  S RGG   S
Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  167 bits (424), Expect = 9e-42
 Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 12/217 (5%)

Query: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
           K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV +   E VD  M+ 
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
             HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+YF  +G++E I
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211

Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
           E+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+ K++       Q+
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY-----QQQ 266

Query: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
            + GS     GR  G GG+   G  G  S RGG   S
Sbjct: 267 QQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +K+   KEP  ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T
Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
           +   E V   M    H V     E K A+S+E  Q+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  161 bits (408), Expect = 6e-40
 Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 13/241 (5%)

Query: 5   ASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
           ASP  P    K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+  
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70

Query: 65  VEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124
              VD  +  + H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ Y
Sbjct: 71  QAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128

Query: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
           FEQ+GK++   +M D+ + + RGF FVTF+  D V+K+    +H +     E +KA PK 
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK- 187

Query: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSC-GGGGYGGSGDG 243
           E+ S + S RGR     +         G D F  G    G  GF  +      Y G   G
Sbjct: 188 EVMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPG 238

Query: 244 Y 244
           Y
Sbjct: 239 Y 239



 Score = 75.5 bits (184), Expect = 6e-14
 Identities = 35/91 (38%), Positives = 58/91 (63%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           + A PK   + +K+F+GGLS  TT E ++ +FEQ+G + D ++M D  T R RGFGFVT+
Sbjct: 98  RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSRE 93
            + + V+       H+++ ++VE K+A  +E
Sbjct: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  160 bits (406), Expect = 1e-39
 Identities = 109/305 (35%), Positives = 152/305 (49%), Gaps = 28/305 (9%)

Query: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
           K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A    VD  +  
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81

Query: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
             H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ YFEQ+GK+E  
Sbjct: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139

Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
            +M D+ + + RGF FVTF++ D V+K+    +H +     E +KA PK+ M        
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP------ 193

Query: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254
                G  G  RG  +   D F  G    G   F  +  G GY G    Y G+   G   
Sbjct: 194 ----PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSY-GYQFPGFPA 246

Query: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNF-GGRSSGP----YG------GGGQYF--AKPQN 301
              G          + S   P + G F G  S GP    YG      G G Y   A PQ 
Sbjct: 247 AAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQP 306

Query: 302 QGGYG 306
             G+G
Sbjct: 307 GSGFG 311



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           + A PK   + +K+F+GGLS  T  E ++ +FEQ+G + D ++M D  T R RGFGFVT+
Sbjct: 99  RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99
              + V+       H+++ ++VE K+A  +E    PG
Sbjct: 159 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 195


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  156 bits (394), Expect = 3e-38
 Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
           K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A    VD  +  
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
             H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ YFEQ+GK+E  
Sbjct: 78  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135

Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
            +M D+ + + RGF FVTF++ D V+K+    +H +     E +KA PK+ M    +  R
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195

Query: 195 GR 196
            R
Sbjct: 196 AR 197



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)

Query: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           + A PK   + +K+F+GGLS  T  E ++ +FEQ+G + D ++M D  T R RGFGFVT+
Sbjct: 95  RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 154

Query: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99
              + V+       H+++ ++VE K+A  +E    PG
Sbjct: 155 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191


>gi|239747524 PREDICTED: similar to serum response factor-related
           protein C4 [Homo sapiens]
          Length = 434

 Score =  147 bits (371), Expect = 1e-35
 Identities = 80/131 (61%), Positives = 85/131 (64%), Gaps = 24/131 (18%)

Query: 205 GRGDGFGGNDNFGRGGNFSGRG-GF-GGSCG----GGGYGGSGDGYNGFGN--------- 249
           GRGDG+ G   FG  G + G G G+ GGS G    G GYG  G GY G G+         
Sbjct: 46  GRGDGYNG---FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102

Query: 250 ------DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303
                  GS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KPQNQG
Sbjct: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQG 162

Query: 304 GYGVSSSSSSY 314
           GYG SSSS  Y
Sbjct: 163 GYGGSSSSRHY 173



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 1  MSKSASPKEPEQLRKLFIG 19
          +S S SPKEP+QLRKLF+G
Sbjct: 28 LSNSESPKEPKQLRKLFLG 46


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  143 bits (360), Expect = 2e-34
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)

Query: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 71  AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
            + + PH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126

Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186

Query: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205
           +A P+   + A     +SQ G R   N   G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  143 bits (360), Expect = 2e-34
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)

Query: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 71  AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
            + + PH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126

Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186

Query: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205
           +A P+   + A     +SQ G R   N   G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 244 YNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303
           Y G+G D S FG G     F + + Q  ++G   G +  G    P GG G  F + QN  
Sbjct: 349 YAGYGQDLSGFGQG-----FSDPSQQPPSYG---GPSVPGSGGPPAGGSG--FGRGQNHN 398

Query: 304 GYG 306
             G
Sbjct: 399 VQG 401


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score =  115 bits (288), Expect = 5e-26
 Identities = 98/324 (30%), Positives = 146/324 (45%), Gaps = 51/324 (15%)

Query: 16  LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
           L + GL ++TT++ L+ +F  +G +    V +D  T  S+GFGFV + T  E    + + 
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TEYETQVKVMSQ 164

Query: 76  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
            H +DGR  + K   S++    P   L  +K+FVG   ED  E  LR++F QYG  +V++
Sbjct: 165 RHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219

Query: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
           +   +     R FAFVTF D D + + +  +   +KG +  +  A PK       +S R 
Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269

Query: 196 RRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFG 255
              SG FGG  G GFG             +GGFG S GGG   G+  G N  G  G NFG
Sbjct: 270 LERSGRFGGNPG-GFG------------NQGGFGNSRGGGAGLGNNQGSNMGG--GMNFG 314

Query: 256 G---------------GGSYNDFGNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYF 296
                             S+   G   +Q +  GP       GN     +  +G G   +
Sbjct: 315 AFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSY 374

Query: 297 AKPQNQGGYGVSSSSSSYGSGRRF 320
           +   +    G  S+S++ GSG  F
Sbjct: 375 SGSNSGAAIGWGSASNA-GSGSGF 397



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 60/255 (23%), Positives = 96/255 (37%), Gaps = 27/255 (10%)

Query: 6   SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
           S  EP + RK+F+G  + + T++ LR  F Q+G + D  +      K  R F FVT+A  
Sbjct: 183 SQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFAD- 236

Query: 66  EEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
           +++  ++      + G  V    A  + +S R            GG        + R   
Sbjct: 237 DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGG 296

Query: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
              G         ++GS    G  F  F    S++  ++         +  +   L  Q+
Sbjct: 297 AGLG--------NNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGMLASQQ 344

Query: 186 MASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
             S  S     +  GN        FG  +N   G N     G+G +       GSG G+N
Sbjct: 345 NQSGPSG--NNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASN----AGSGSGFN 398

Query: 246 -GFGN--DGSNFGGG 257
            GFG+  D  + G G
Sbjct: 399 GGFGSSMDSKSSGWG 413


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score =  102 bits (253), Expect = 6e-22
 Identities = 85/254 (33%), Positives = 126/254 (49%), Gaps = 38/254 (14%)

Query: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
           + L +  LS+  T+E+L+  FE+    T   V ++ N K S+G+ F+ +A+ E+   A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK-SKGYAFIEFASFEDAKEALN 541

Query: 74  T-TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK-IFVGGIKEDTEEHHLRDYFEQYGKI 131
           +    +++GR +  +    R     P A     K +FV G+ EDT E  L++ F+  G +
Sbjct: 542 SCNKREIEGRAIRLELQGPRGS---PNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596

Query: 132 EVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASAS 190
               I+TDR +G  +GF FV F+ + D+       +   + G+   +  A PK       
Sbjct: 597 RA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK------- 648

Query: 191 SSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGND 250
               G  G G  GGGRG GFG     GRGG   GRGGFGG  G GG+GG G G+ G    
Sbjct: 649 ----GEGGFGGRGGGRG-GFG-----GRGGGRGGRGGFGGR-GRGGFGGRG-GFRG---- 692

Query: 251 GSNFGGGGSYNDFG 264
               GGGG +   G
Sbjct: 693 --GRGGGGDHKPQG 704


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 79/291 (27%), Positives = 113/291 (38%), Gaps = 77/291 (26%)

Query: 92  REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
           R D+     +     IFV G+ E      + ++F+Q G I+        +I + TD+ +G
Sbjct: 218 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 277

Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGS 199
           K +G A V+FDD  S    +D    +++H   G+  +V  A  + E      S  GRRG 
Sbjct: 278 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 334

Query: 200 GNF---------------------------------------------------GGGRGD 208
           G +                                                   G  RG 
Sbjct: 335 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 394

Query: 209 GFGGNDNF-GRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
           G+GG   + GRGG    RGG+GG   GGGYGG      G+  D S  G GG  +  G   
Sbjct: 395 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 454

Query: 268 NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGR 318
           ++   +G  +GG +GG   G YGG         ++GGYG       YG  R
Sbjct: 455 DRGGGYGGDRGGGYGGDRGGGYGG---------DRGGYG-GDRGGGYGGDR 495



 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 54/130 (41%), Positives = 67/130 (51%), Gaps = 21/130 (16%)

Query: 195 GRRGSGNFGGGRGDGFGGNDNFG----RGGNFSG-RGGFGGSCGGG------GYGGSGDG 243
           G R  G +GG RG G+GG+   G    RGG + G RGG+GG  GGG      GYGG   G
Sbjct: 445 GDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGG 504

Query: 244 YNG----FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYF 296
           Y G    +G D   +GG  S   +G      S +G  + G +GG RS G YGG  GG Y 
Sbjct: 505 YGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYG 564

Query: 297 AKPQNQGGYG 306
               ++GGYG
Sbjct: 565 G---DRGGYG 571



 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 54/135 (40%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 193 QRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG--SGDGYNG--FG 248
           +RG RG G  GG RG   G     G GG+ S  GG+ G   GGGYGG  SG GY G   G
Sbjct: 399 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 458

Query: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG-----GGQYFAKPQNQG 303
             G + GGG   +  G Y      +G  +GG +GG   G YGG     GG       ++G
Sbjct: 459 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRG 517

Query: 304 GYGVSSSSSSYGSGR 318
           GYG   S   YG  R
Sbjct: 518 GYGGDRSRGGYGGDR 532



 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 188 SASSSQRGRRGSGNFGGGR-GDGFGGNDNFGRGGNFSG-RGGFGGSCGGGGYGGSGDGYN 245
           S+     G R  G +GG R G G+GG+    RGG + G RGG  G   GGGYGG   GY 
Sbjct: 429 SSGGGYSGDRSGGGYGGDRSGGGYGGD----RGGGYGGDRGGGYGGDRGGGYGGDRGGYG 484

Query: 246 GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG--GGQYFAKPQN 301
             G+ G  +GG  GG   D G Y      +G  +GG  G RS G YGG  GG        
Sbjct: 485 --GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 542

Query: 302 QGGYGVSSSSSSYGSGR 318
            GGYG   S   YG  R
Sbjct: 543 SGGYGGDRSGGGYGGDR 559



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 195 GRRGSGNFGGGRG--DGFGGNDNFGRGGNFSGRGGFGGSCGGG------GYGGSGDGYNG 246
           G R  G +GG RG   G+GG+ + G GG+ SG GG+GG  GGG      GYGG   G N 
Sbjct: 521 GDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSG-GGYGGDRGGGYGGDRGGYGGKMGGRND 579

Query: 247 FGNDGSN 253
           + ND  N
Sbjct: 580 YRNDQRN 586



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 20/83 (24%)

Query: 200 GNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGG---------GYGG--SGDGY---- 244
           G +GG RG G+GG D  G GG+ S RGG+GG  GGG         GYGG  SG GY    
Sbjct: 503 GGYGGDRG-GYGG-DRGGYGGDRS-RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 559

Query: 245 -NGFGNDGSNFGGG-GSYNDFGN 265
             G+G D   +GG  G  ND+ N
Sbjct: 560 GGGYGGDRGGYGGKMGGRNDYRN 582



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 22/113 (19%)

Query: 215 NFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGND-----GSNFGGGGSYND-----FG 264
           ++G+ G         G+ G  GYG +   Y+G+G       G N+ G  SY       +G
Sbjct: 6   SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYG 65

Query: 265 NYNNQSSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPQNQGGYGVSSSSSSYG 315
            Y NQ  +            S  PY   GQ        +QGG   S     YG
Sbjct: 66  GYENQKQS----------SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 108



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)

Query: 190 SSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG 234
           S    G R  G +GG RG G+GG+           RGG+GG  GG
Sbjct: 543 SGGYGGDRSGGGYGGDRGGGYGGD-----------RGGYGGKMGG 576



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 16/124 (12%)

Query: 156 HDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDN 215
           HDS  +   Q YH+ +  N        +++++      RG  GS   GGGRG G  G D 
Sbjct: 136 HDSYSQNQ-QSYHSQR-ENYSHHTQDDRRDVSRYGEDNRGYGGSQ--GGGRGRG--GYDK 189

Query: 216 FGRG---GNFSG-RGGFGGSCGGGGYGGSGDGYNGFGNDGSN------FGGGGSYNDFGN 265
            GRG   G+  G RGGF    G   YG   D  +   N  +N       G G S +  G 
Sbjct: 190 DGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGE 249

Query: 266 YNNQ 269
           +  Q
Sbjct: 250 FFKQ 253



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 212 GNDNFGRGGNF---SGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
           G DN G GG+     GRGG+     G   G SG    GF     NFGG   Y    + ++
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGF----KNFGGHRDYGPRTDADS 223

Query: 269 QSSN 272
           +S N
Sbjct: 224 ESDN 227



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 227 GFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
           G+GGS GGG   G  D        GS+ G  G + +FG +     ++GP
Sbjct: 173 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR----DYGP 217



 Score = 28.5 bits (62), Expect = 8.3
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 248 GNDGSNFGGGGSYNDFGNYNNQS--------SNFGPMKGGNFGGRSSGPYGGGGQYFAKP 299
           G+ G + G   SY+ +GN  +Q         S +G     ++G   SG Y   GQ ++  
Sbjct: 5   GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSG-YSSYGQSYS-- 61

Query: 300 QNQGGYGVSSSSS 312
           Q+ GGY     SS
Sbjct: 62  QSYGGYENQKQSS 74


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 79/291 (27%), Positives = 113/291 (38%), Gaps = 77/291 (26%)

Query: 92  REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
           R D+     +     IFV G+ E      + ++F+Q G I+        +I + TD+ +G
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280

Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGS 199
           K +G A V+FDD  S    +D    +++H   G+  +V  A  + E      S  GRRG 
Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 337

Query: 200 GNF---------------------------------------------------GGGRGD 208
           G +                                                   G  RG 
Sbjct: 338 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 397

Query: 209 GFGGNDNF-GRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
           G+GG   + GRGG    RGG+GG   GGGYGG      G+  D S  G GG  +  G   
Sbjct: 398 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 457

Query: 268 NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGR 318
           ++   +G  +GG +GG   G YGG         ++GGYG       YG  R
Sbjct: 458 DRGGGYGGDRGGGYGGDRGGGYGG---------DRGGYG-GDRGGGYGGDR 498



 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 54/130 (41%), Positives = 67/130 (51%), Gaps = 21/130 (16%)

Query: 195 GRRGSGNFGGGRGDGFGGNDNFG----RGGNFSG-RGGFGGSCGGG------GYGGSGDG 243
           G R  G +GG RG G+GG+   G    RGG + G RGG+GG  GGG      GYGG   G
Sbjct: 448 GDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGG 507

Query: 244 YNG----FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYF 296
           Y G    +G D   +GG  S   +G      S +G  + G +GG RS G YGG  GG Y 
Sbjct: 508 YGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYG 567

Query: 297 AKPQNQGGYG 306
               ++GGYG
Sbjct: 568 G---DRGGYG 574



 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 54/135 (40%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 193 QRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG--SGDGYNG--FG 248
           +RG RG G  GG RG   G     G GG+ S  GG+ G   GGGYGG  SG GY G   G
Sbjct: 402 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 461

Query: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG-----GGQYFAKPQNQG 303
             G + GGG   +  G Y      +G  +GG +GG   G YGG     GG       ++G
Sbjct: 462 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRG 520

Query: 304 GYGVSSSSSSYGSGR 318
           GYG   S   YG  R
Sbjct: 521 GYGGDRSRGGYGGDR 535



 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 188 SASSSQRGRRGSGNFGGGR-GDGFGGNDNFGRGGNFSG-RGGFGGSCGGGGYGGSGDGYN 245
           S+     G R  G +GG R G G+GG+    RGG + G RGG  G   GGGYGG   GY 
Sbjct: 432 SSGGGYSGDRSGGGYGGDRSGGGYGGD----RGGGYGGDRGGGYGGDRGGGYGGDRGGYG 487

Query: 246 GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG--GGQYFAKPQN 301
             G+ G  +GG  GG   D G Y      +G  +GG  G RS G YGG  GG        
Sbjct: 488 --GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 545

Query: 302 QGGYGVSSSSSSYGSGR 318
            GGYG   S   YG  R
Sbjct: 546 SGGYGGDRSGGGYGGDR 562



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 195 GRRGSGNFGGGRG--DGFGGNDNFGRGGNFSGRGGFGGSCGGG------GYGGSGDGYNG 246
           G R  G +GG RG   G+GG+ + G GG+ SG GG+GG  GGG      GYGG   G N 
Sbjct: 524 GDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSG-GGYGGDRGGGYGGDRGGYGGKMGGRND 582

Query: 247 FGNDGSN 253
           + ND  N
Sbjct: 583 YRNDQRN 589



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 20/83 (24%)

Query: 200 GNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGG---------GYGG--SGDGY---- 244
           G +GG RG G+GG D  G GG+ S RGG+GG  GGG         GYGG  SG GY    
Sbjct: 506 GGYGGDRG-GYGG-DRGGYGGDRS-RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 562

Query: 245 -NGFGNDGSNFGGG-GSYNDFGN 265
             G+G D   +GG  G  ND+ N
Sbjct: 563 GGGYGGDRGGYGGKMGGRNDYRN 585



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 215 NFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGND-----GSNFGGGGSYNDFGNYNNQ 269
           ++G+ G         G+ G  GYG +   Y+G+G       G N+ G  SY    + +  
Sbjct: 6   SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQ--SQSGY 63

Query: 270 SSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPQNQGGYGVSSSSSSYG 315
           S ++G  +       S  PY   GQ        +QGG   S     YG
Sbjct: 64  SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 111



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)

Query: 190 SSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG 234
           S    G R  G +GG RG G+GG+           RGG+GG  GG
Sbjct: 546 SGGYGGDRSGGGYGGDRGGGYGGD-----------RGGYGGKMGG 579



 Score = 35.8 bits (81), Expect = 0.052
 Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 190 SSSQRGRRGSGNFGGGRGD--GFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGF 247
           S S  G  GS  +G       G+G   +   G N+SG   +G S       G    Y G+
Sbjct: 16  SYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS-----QSGYSQSYGGY 70

Query: 248 GNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK---PQNQGG 304
            N   +      YN+ G   N  S+    +GG         YG    Y  +    Q+QG 
Sbjct: 71  ENQKQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGS 128

Query: 305 YGVSSS 310
           Y   S+
Sbjct: 129 YDEQSN 134



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 16/124 (12%)

Query: 156 HDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDN 215
           HDS  +   Q YH+ +  N        +++++      RG  GS   GGGRG G  G D 
Sbjct: 139 HDSYSQNQ-QSYHSQR-ENYSHHTQDDRRDVSRYGEDNRGYGGSQ--GGGRGRG--GYDK 192

Query: 216 FGRG---GNFSG-RGGFGGSCGGGGYGGSGDGYNGFGNDGSN------FGGGGSYNDFGN 265
            GRG   G+  G RGGF    G   YG   D  +   N  +N       G G S +  G 
Sbjct: 193 DGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGE 252

Query: 266 YNNQ 269
           +  Q
Sbjct: 253 FFKQ 256



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 235 GGYGGSG---DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGG--NFGGRSSG-- 287
           G YG SG     Y+ +GN GS   G  S +  G      S++G    G  ++G   SG  
Sbjct: 5   GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYS 64

Query: 288 -PYGG-----GGQYFAKPQNQGGYGVSSSSSSYGSGR 318
             YGG        Y  +P N  G   +  SS    GR
Sbjct: 65  QSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGR 101



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 212 GNDNFGRGGNF---SGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
           G DN G GG+     GRGG+     G   G SG    GF     NFGG   Y    + ++
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGF----KNFGGHRDYGPRTDADS 226

Query: 269 QSSN 272
           +S N
Sbjct: 227 ESDN 230



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 227 GFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
           G+GGS GGG   G  D        GS+ G  G + +FG +     ++GP
Sbjct: 176 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR----DYGP 220


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
           K+FVGG+  DT E  L   F +YG+I  + ++ DR + + RGF FVTF++  D+ D ++ 
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 165 QKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSG 224
               +V G    V +A    +  S         G G F GGRG G G    F RGG   G
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRG----FSRGGGDRG 122

Query: 225 RGGFGGSCGGGGYGGSGDGYNGFGNDG--SNFGGGGSYND 262
            GG       GGYGGS D Y+     G  S+   GGSY D
Sbjct: 123 YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
          KLF+GGLSF+T ++SL   F ++G +++ VV++D  T+RSRGFGFVT+  +++  DA M 
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 74 TTPHKVDGRVVEPKRAVSREDSQRPG 99
               VDGR +   +A    D++  G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 55/142 (38%), Positives = 66/142 (46%), Gaps = 18/142 (12%)

Query: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNF--GRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
           S     RG  G    GGG G G+GG      G GG++ G  G GG  GGG  GGSG G++
Sbjct: 484 SYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHS 543

Query: 246 G------FGNDGSNFG-----GGGSYNDFGNYNNQSSNFGPMKGG--NFGGRSSGPYGGG 292
           G       G  G N+G     GGGS   +G  +      G   GG   FGG S G YGGG
Sbjct: 544 GGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603

Query: 293 GQYFAKPQNQGGYGVSSSSSSY 314
            +      + GGYG  S  SS+
Sbjct: 604 EE---ASGSGGGYGGGSGKSSH 622



 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 51/139 (36%), Positives = 60/139 (43%), Gaps = 14/139 (10%)

Query: 191 SSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG--GGYGGSGDGYNGFG 248
           SS  G+ G G  GG  G  +G     G GG++ G GG GG  GG  G  GGSG  Y G  
Sbjct: 467 SSGAGKIGLGGRGGS-GGSYGRGSRGGSGGSYGG-GGSGGGYGGGSGSRGGSGGSYGGGS 524

Query: 249 NDGSNFGGG-GSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGV 307
             G   GGG G  +  G+            GGN+GG S    G GG Y     ++GG G 
Sbjct: 525 GSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGG 584

Query: 308 S---------SSSSSYGSG 317
           S          S  SYG G
Sbjct: 585 SHGGGSGFGGESGGSYGGG 603



 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 44/111 (39%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 211 GGNDNFGRGG----NFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNY 266
           GG ++F   G       GRGG GGS G G  GGSG  Y G G+ G   GG GS    G  
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGS 519

Query: 267 NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSG 317
               S  G   GG +GG S G + GG        + G YG   S S  GSG
Sbjct: 520 YGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYG-GGSGSGGGSG 569



 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 56/158 (35%), Positives = 65/158 (41%), Gaps = 48/158 (30%)

Query: 190 SSSQRGRRGSGNFGGGRGDG---------FGGNDNFGRGGNFSGRGGFGGS----CGGGG 236
           SSS   R G G  GGG G G         F  +   G GG FS   G+GG     CG GG
Sbjct: 7   SSSYLSRSGGGG-GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGG 65

Query: 237 --------YGGSGDGYN------GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGN 280
                    GGSG G++      GFG     FGG  GG Y+  G +           GG 
Sbjct: 66  GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGF-----------GGG 114

Query: 281 FGGRSSGPYGGG-GQYFAKPQNQGGYGVSSSSSSYGSG 317
           FGG S G +GGG G  F      GG+G     +  G G
Sbjct: 115 FGGGSGGGFGGGYGSGF------GGFGGFGGGAGGGDG 146



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 43/92 (46%), Positives = 47/92 (51%), Gaps = 18/92 (19%)

Query: 190 SSSQRGRRGSGNFG----GGRGDGF----------GGNDNFG--RGGNFSGRGGFGGSCG 233
           SS   GR G G+FG    GG G GF          GG+  FG   GG +S  GGFGG  G
Sbjct: 57  SSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFG 116

Query: 234 GGGYGGSGDGY-NGFGNDGSNFGGGGSYNDFG 264
           GG  GG G GY +GFG  G  FGGG    D G
Sbjct: 117 GGSGGGFGGGYGSGFGGFG-GFGGGAGGGDGG 147



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 41/98 (41%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGR---GGFGGSCGGGGYGGSGDGYN 245
           +SSS  G   S   G G G  FG +   G GG FS     GGFGG   G G G SG GY+
Sbjct: 48  SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFG-GASGGGYS 106

Query: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG 283
             G  G  FGGG      G Y +    FG   GG  GG
Sbjct: 107 SSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGG 144



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 215 NFGRGGNFSGRGGFGGSCGGGGYGGSGDGY--NGFGNDGSNFGGGGSYNDFGNYNNQSSN 272
           N   GG         G  G GG GGSG  Y     G  G ++GGGGS   +G  +     
Sbjct: 456 NLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515

Query: 273 FGPMKGG--NFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSG 317
            G   GG    GG S G YGGG        + GG+    S  +YG G
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS-GGSGGNYGGG 561



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 15/80 (18%)

Query: 255 GGGGSY-NDFGNYNNQSSNFGPMKGGNFGGR--SSGPYGGGGQ------------YFAKP 299
           GGGG      G+  +  S F    GG  GGR  SS  YGGG              Y    
Sbjct: 16  GGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGG 75

Query: 300 QNQGGYGVSSSSSSYGSGRR 319
            + GG+  SS    +G G R
Sbjct: 76  GSGGGFSASSLGGGFGGGSR 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,032,774
Number of Sequences: 37866
Number of extensions: 789825
Number of successful extensions: 16337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 3510
Number of HSP's gapped (non-prelim): 4456
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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