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Search of human proteins with 58761498
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like
[Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 670 0.0
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 670 0.0
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 645 0.0
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 621 e-178
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 556 e-159
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 556 e-159
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 554 e-158
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 455 e-128
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 412 e-115
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 412 e-115
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 297 1e-80
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 197 8e-51
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 195 4e-50
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 194 1e-49
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 192 3e-49
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 179 4e-45
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 170 2e-42
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 167 9e-42
gi|4505255 musashi 1 [Homo sapiens] 161 6e-40
gi|20373175 musashi 2 isoform a [Homo sapiens] 160 1e-39
gi|25121993 musashi 2 isoform b [Homo sapiens] 156 3e-38
gi|239747524 PREDICTED: similar to serum response factor-related... 147 1e-35
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 143 2e-34
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 143 2e-34
gi|6678271 TAR DNA binding protein [Homo sapiens] 115 5e-26
gi|55956788 nucleolin [Homo sapiens] 102 6e-22
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 96 4e-20
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 96 4e-20
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 96 4e-20
gi|55956899 keratin 9 [Homo sapiens] 86 6e-17
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 670 bits (1729), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
Query: 301 NQGGYGVSSSSSSYGSGRRF 320
NQGGYGVSSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 670 bits (1729), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
Query: 301 NQGGYGVSSSSSSYGSGRRF 320
NQGGYGVSSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 645 bits (1664), Expect = 0.0
Identities = 310/320 (96%), Positives = 311/320 (97%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
L KQEMASASSSQRGR GSGNFGGGRG GFGGNDNFGRGGNFSGRGGFGGS GGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
Query: 301 NQGGYGVSSSSSSYGSGRRF 320
NQGGYG SSSSSSYGSGRRF
Sbjct: 301 NQGGYGGSSSSSSYGSGRRF 320
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 621 bits (1601), Expect = e-178
Identities = 310/372 (83%), Positives = 311/372 (83%), Gaps = 52/372 (13%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
L KQEMASASSSQRGR GSGNFGGGRG GFGGNDNFGRGGNFSGRGGFGGS GGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 241 GDGYNGFGND-------------------------------------------------- 250
GDGYNGFGND
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
Query: 251 --GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308
GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+NQGGYG S
Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
Query: 309 SSSSSYGSGRRF 320
SSSSSYGSGRRF
Sbjct: 361 SSSSSYGSGRRF 372
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 556 bits (1434), Expect = e-159
Identities = 272/320 (85%), Positives = 283/320 (88%), Gaps = 5/320 (1%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMN PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GGFGGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKPQ
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
Query: 301 NQGGYGVSSSSSSYGSGRRF 320
NQGGYG SSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 556 bits (1434), Expect = e-159
Identities = 272/320 (85%), Positives = 283/320 (88%), Gaps = 5/320 (1%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMN PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GGFGGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKPQ
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
Query: 301 NQGGYGVSSSSSSYGSGRRF 320
NQGGYG SSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 554 bits (1428), Expect = e-158
Identities = 271/320 (84%), Positives = 282/320 (88%), Gaps = 5/320 (1%)
Query: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMN PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GG GGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKPQ
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
Query: 301 NQGGYGVSSSSSSYGSGRRF 320
NQGGYG SSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 455 bits (1171), Expect = e-128
Identities = 242/365 (66%), Positives = 261/365 (71%), Gaps = 65/365 (17%)
Query: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY+ VE
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
EVDAAM PHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LRDYFE
Sbjct: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147
Query: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+ GHNCEV+KAL KQEM
Sbjct: 148 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207
Query: 187 ASASSSQRGR-RGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG--GGYGGSGDG 243
SA SQRGR GSGNF G G+ GG NFGRGGNF GRGG+GG GG G YGG G
Sbjct: 208 QSA-GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266
Query: 244 YNGFGND----------------------------------------------GSNFGGG 257
YNGFG D G N+GGG
Sbjct: 267 YNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGG 326
Query: 258 GSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPQNQGGYGVSSSSSSYG 315
G+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GGYG S YG
Sbjct: 327 GNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GGYGSGGGSGGYG 374
Query: 316 SGRRF 320
S RRF
Sbjct: 375 S-RRF 378
Score = 65.5 bits (158), Expect = 6e-11
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
S P ++K+F+GG+ +T + +LR +FE++G + VM D + + RGF FVT+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
Query: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGA 100
+ VD + H ++G E K+A+S+++ Q G+
Sbjct: 176 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.9 bits (154), Expect = 2e-10
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 28/247 (11%)
Query: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
E+ P ++K+F+GG+ +T + LR++FE++G + +M D + + RGF FVT
Sbjct: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
Query: 153 FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGG---RGDG 209
+ + VD + + H V G E ++A+ +++ + ++ F GG +
Sbjct: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139
Query: 210 FGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-- 267
+ D F + G G G + ++ +D + Y+ +N
Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD--DHDTVDKIVVQKYHTINGHNCE 197
Query: 268 -------NQSSNFGPMKG-----GNFGGRSSGPYGGGGQYFAKPQN---QGGYGVSSSSS 312
+ + G +G GNF GR G +GGGG F + N +GGYG S
Sbjct: 198 VKKALSKQEMQSAGSQRGRGGGSGNFMGR-GGNFGGGGGNFGRGGNFGGRGGYGGGGGGS 256
Query: 313 --SYGSG 317
SYG G
Sbjct: 257 RGSYGGG 263
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 412 bits (1058), Expect = e-115
Identities = 210/334 (62%), Positives = 240/334 (71%), Gaps = 35/334 (10%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
VDAAM PH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+ GHN EVRKAL +QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 188 SASSSQRGRRGS----------GNFGGGRGDGF-GGNDNFGRGGNFS----------GRG 226
SS+ GR G+ GNFG G G F GG+D +G G F G G
Sbjct: 195 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 254
Query: 227 GFGGSCG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274
FGGS G GGG GG G G G+GN G +GGG G+YNDFGNYN Q SN+G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 314
Query: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPQNQGGYG 306
PMK GNFGG GPYGGG GGYG
Sbjct: 315 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYG 348
Score = 65.9 bits (159), Expect = 5e-11
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+S P ++KLF+GG+ +T + LR +FE++G + ++ D + + RGFGFVT+
Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQ 96
+ VD + H ++G E ++A+SR++ Q
Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 412 bits (1058), Expect = e-115
Identities = 210/334 (62%), Positives = 240/334 (71%), Gaps = 35/334 (10%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
VDAAM PH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+ GHN EVRKAL +QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 188 SASSSQRGRRGS----------GNFGGGRGDGF-GGNDNFGRGGNFS----------GRG 226
SS+ GR G+ GNFG G G F GG+D +G G F G G
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
Query: 227 GFGGSCG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274
FGGS G GGG GG G G G+GN G +GGG G+YNDFGNYN Q SN+G
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
Query: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPQNQGGYG 306
PMK GNFGG GPYGGG GGYG
Sbjct: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYG 336
Score = 65.9 bits (159), Expect = 5e-11
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+S P ++KLF+GG+ +T + LR +FE++G + ++ D + + RGFGFVT+
Sbjct: 89 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQ 96
+ VD + H ++G E ++A+SR++ Q
Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 297 bits (760), Expect = 1e-80
Identities = 157/307 (51%), Positives = 197/307 (64%), Gaps = 10/307 (3%)
Query: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 69 DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
DAAM +PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H ++GH EV+KA+PK+++ S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
Query: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNF---GRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
G R S GGRG G G + N G GG ++ GG+GG GGGGY G G
Sbjct: 182 GGGGG-GSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYNAYGGGGG 239
Query: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQYFAKPQNQ 302
G GS++G G + FG+Y+ S++GPMK G GG +GG G Y
Sbjct: 240 GSSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297
Query: 303 GGYGVSS 309
GGYG SS
Sbjct: 298 GGYGGSS 304
Score = 80.5 bits (197), Expect = 2e-15
Identities = 71/264 (26%), Positives = 103/264 (39%), Gaps = 58/264 (21%)
Query: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
SA P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
+ D A H + G VE K+AV +ED G GG + R
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
RG G+ D + + K Y++ G+
Sbjct: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223
Query: 184 QEMASASSSQRGRRGSGNFGGGRGDGFGGND---NFGRGGNFS-GRGGFGGSCGGGGYGG 239
G G GG G +GG+D FG G++S + +G GGG GG
Sbjct: 224 -----GGGGGGGYNAYGGGGG--GSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGG 276
Query: 240 SGDGYNGFGNDG---SNFGGGGSY 260
G + G N G +GGGG Y
Sbjct: 277 GGSSWGGRSNSGPYRGGYGGGGGY 300
Score = 33.1 bits (74), Expect = 0.34
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGY 237
S S G SG GGG G +GG N G + G G GG GG +
Sbjct: 259 SQHQSSYGPMKSGGGGGGGGSSWGGRSN---SGPYRGGYGGGGGYGGSSF 305
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 197 bits (502), Expect = 8e-51
Identities = 109/288 (37%), Positives = 165/288 (57%), Gaps = 17/288 (5%)
Query: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K + K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ E VD M+ HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSG 241
K++ Q G RG G G RG G G + N+ +G + G+ G YG +
Sbjct: 240 SKEQY--QQQQQWGSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNS 290
Query: 242 DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 291 QGYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 195 bits (496), Expect = 4e-50
Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 17/275 (6%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV + E VD M+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+YF +G++E I
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
E+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+ K++ Q
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQW 269
Query: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254
G RG G G RG G G + N+ +G + G+ G YG + GY G+G G ++
Sbjct: 270 GSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNSQGYGGYG--GYDY 320
Query: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
G +Y +G+Y+NQ S +G + S PY
Sbjct: 321 TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K+ KEP ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T
Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
+ E V M H V E K A+S+E Q+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 194 bits (492), Expect = 1e-49
Identities = 101/290 (34%), Positives = 156/290 (53%), Gaps = 10/290 (3%)
Query: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ VD + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
Query: 182 PKQEMASASSSQRGRRG--SGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG 239
PK+ Q+G RG +G GG RG G G N+ +G N G+G G
Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
Query: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
+ GY G+ G N+G G + +Y+ Q S +G K GG Y
Sbjct: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYG--KASRGGGNHQNNY 417
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 192 bits (488), Expect = 3e-49
Identities = 104/276 (37%), Positives = 160/276 (57%), Gaps = 24/276 (8%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
V+ ++ H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV G CE++ A PK+ +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 186 MASASSSQRGRRGSGNFGGGRGDGFGG-NDNFGRG-GNFSGRG-----GFGGSCGG---- 234
S RG R GN G G G G GG + ++ +G GN+ +G G+G GG
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296
Query: 235 -GGYGGSGDGYN---GFGNDGSNFGGGGSYNDFGNY 266
GY G G GY+ G N G + GG N++ Y
Sbjct: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K A + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
E V + H V G E K A +E Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 179 bits (453), Expect = 4e-45
Identities = 88/222 (39%), Positives = 136/222 (61%), Gaps = 15/222 (6%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
V+ ++ H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV G CE++ A PK+ +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 186 MASASSSQRGRRGSGNFGGGRGDGFG--GNDNFG----RGGN 221
S RG R GN G G G G G G+ N+G RGG+
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGH 278
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K A + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
E V + H V G E K A +E Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 170 bits (430), Expect = 2e-42
Identities = 92/230 (40%), Positives = 136/230 (59%), Gaps = 12/230 (5%)
Query: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K + K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ E VD M+ HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
K++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 167 bits (424), Expect = 9e-42
Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 12/217 (5%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV + E VD M+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+YF +G++E I
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
E+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+ K++ Q+
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY-----QQQ 266
Query: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
+ GS GR G GG+ G G S RGG S
Sbjct: 267 QQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K+ KEP ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T
Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
+ E V M H V E K A+S+E Q+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 161 bits (408), Expect = 6e-40
Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 13/241 (5%)
Query: 5 ASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
ASP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
Query: 65 VEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124
VD + + H++D + ++PK A R +P KKIFVGG+ +T ++ Y
Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
FEQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H + E +KA PK
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK- 187
Query: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSC-GGGGYGGSGDG 243
E+ S + S RGR + G D F G G GF + Y G G
Sbjct: 188 EVMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPG 238
Query: 244 Y 244
Y
Sbjct: 239 Y 239
Score = 75.5 bits (184), Expect = 6e-14
Identities = 35/91 (38%), Positives = 58/91 (63%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+ A PK + +K+F+GGLS TT E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSRE 93
+ + V+ H+++ ++VE K+A +E
Sbjct: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 160 bits (406), Expect = 1e-39
Identities = 109/305 (35%), Positives = 152/305 (49%), Gaps = 28/305 (9%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 82 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
+M D+ + + RGF FVTF++ D V+K+ +H + E +KA PK+ M
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP------ 193
Query: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254
G G RG + D F G G F + G GY G Y G+ G
Sbjct: 194 ----PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSY-GYQFPGFPA 246
Query: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNF-GGRSSGP----YG------GGGQYF--AKPQN 301
G + S P + G F G S GP YG G G Y A PQ
Sbjct: 247 AAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQP 306
Query: 302 QGGYG 306
G+G
Sbjct: 307 GSGFG 311
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+ A PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 99 RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99
+ V+ H+++ ++VE K+A +E PG
Sbjct: 159 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 195
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 156 bits (394), Expect = 3e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
+M D+ + + RGF FVTF++ D V+K+ +H + E +KA PK+ M + R
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
Query: 195 GR 196
R
Sbjct: 196 AR 197
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+ A PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 95 RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 154
Query: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99
+ V+ H+++ ++VE K+A +E PG
Sbjct: 155 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 147 bits (371), Expect = 1e-35
Identities = 80/131 (61%), Positives = 85/131 (64%), Gaps = 24/131 (18%)
Query: 205 GRGDGFGGNDNFGRGGNFSGRG-GF-GGSCG----GGGYGGSGDGYNGFGN--------- 249
GRGDG+ G FG G + G G G+ GGS G G GYG G GY G G+
Sbjct: 46 GRGDGYNG---FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102
Query: 250 ------DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303
GS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KPQNQG
Sbjct: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQG 162
Query: 304 GYGVSSSSSSY 314
GYG SSSS Y
Sbjct: 163 GYGGSSSSRHY 173
Score = 33.5 bits (75), Expect = 0.26
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 1 MSKSASPKEPEQLRKLFIG 19
+S S SPKEP+QLRKLF+G
Sbjct: 28 LSNSESPKEPKQLRKLFLG 46
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 143 bits (360), Expect = 2e-34
Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 71 AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
+ + PH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205
+A P+ + A +SQ G R N G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 143 bits (360), Expect = 2e-34
Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 71 AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
+ + PH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205
+A P+ + A +SQ G R N G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217
Score = 29.3 bits (64), Expect = 4.9
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 244 YNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303
Y G+G D S FG G F + + Q ++G G + G P GG G F + QN
Sbjct: 349 YAGYGQDLSGFGQG-----FSDPSQQPPSYG---GPSVPGSGGPPAGGSG--FGRGQNHN 398
Query: 304 GYG 306
G
Sbjct: 399 VQG 401
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 115 bits (288), Expect = 5e-26
Identities = 98/324 (30%), Positives = 146/324 (45%), Gaps = 51/324 (15%)
Query: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + T E + +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TEYETQVKVMSQ 164
Query: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 165 RHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
Query: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
+ + R FAFVTF D D + + + + +KG + + A PK +S R
Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
Query: 196 RRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFG 255
SG FGG G GFG +GGFG S GGG G+ G N G G NFG
Sbjct: 270 LERSGRFGGNPG-GFG------------NQGGFGNSRGGGAGLGNNQGSNMGG--GMNFG 314
Query: 256 G---------------GGSYNDFGNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYF 296
S+ G +Q + GP GN + +G G +
Sbjct: 315 AFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSY 374
Query: 297 AKPQNQGGYGVSSSSSSYGSGRRF 320
+ + G S+S++ GSG F
Sbjct: 375 SGSNSGAAIGWGSASNA-GSGSGF 397
Score = 44.3 bits (103), Expect = 1e-04
Identities = 60/255 (23%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT+A
Sbjct: 183 SQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFAD- 236
Query: 66 EEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
+++ ++ + G V A + +S R GG + R
Sbjct: 237 DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGG 296
Query: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
G ++GS G F F S++ ++ + + L Q+
Sbjct: 297 AGLG--------NNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGMLASQQ 344
Query: 186 MASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
S S + GN FG +N G N G+G + GSG G+N
Sbjct: 345 NQSGPSG--NNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASN----AGSGSGFN 398
Query: 246 -GFGN--DGSNFGGG 257
GFG+ D + G G
Sbjct: 399 GGFGSSMDSKSSGWG 413
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 102 bits (253), Expect = 6e-22
Identities = 85/254 (33%), Positives = 126/254 (49%), Gaps = 38/254 (14%)
Query: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
+ L + LS+ T+E+L+ FE+ T V ++ N K S+G+ F+ +A+ E+ A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK-SKGYAFIEFASFEDAKEALN 541
Query: 74 T-TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK-IFVGGIKEDTEEHHLRDYFEQYGKI 131
+ +++GR + + R P A K +FV G+ EDT E L++ F+ G +
Sbjct: 542 SCNKREIEGRAIRLELQGPRGS---PNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596
Query: 132 EVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASAS 190
I+TDR +G +GF FV F+ + D+ + + G+ + A PK
Sbjct: 597 RA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK------- 648
Query: 191 SSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGND 250
G G G GGGRG GFG GRGG GRGGFGG G GG+GG G G+ G
Sbjct: 649 ----GEGGFGGRGGGRG-GFG-----GRGGGRGGRGGFGGR-GRGGFGGRG-GFRG---- 692
Query: 251 GSNFGGGGSYNDFG 264
GGGG + G
Sbjct: 693 --GRGGGGDHKPQG 704
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 95.9 bits (237), Expect = 4e-20
Identities = 79/291 (27%), Positives = 113/291 (38%), Gaps = 77/291 (26%)
Query: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
R D+ + IFV G+ E + ++F+Q G I+ +I + TD+ +G
Sbjct: 218 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 277
Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGS 199
K +G A V+FDD S +D +++H G+ +V A + E S GRRG
Sbjct: 278 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 334
Query: 200 GNF---------------------------------------------------GGGRGD 208
G + G RG
Sbjct: 335 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 394
Query: 209 GFGGNDNF-GRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
G+GG + GRGG RGG+GG GGGYGG G+ D S G GG + G
Sbjct: 395 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 454
Query: 268 NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGR 318
++ +G +GG +GG G YGG ++GGYG YG R
Sbjct: 455 DRGGGYGGDRGGGYGGDRGGGYGG---------DRGGYG-GDRGGGYGGDR 495
Score = 86.3 bits (212), Expect = 3e-17
Identities = 54/130 (41%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 195 GRRGSGNFGGGRGDGFGGNDNFG----RGGNFSG-RGGFGGSCGGG------GYGGSGDG 243
G R G +GG RG G+GG+ G RGG + G RGG+GG GGG GYGG G
Sbjct: 445 GDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGG 504
Query: 244 YNG----FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYF 296
Y G +G D +GG S +G S +G + G +GG RS G YGG GG Y
Sbjct: 505 YGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYG 564
Query: 297 AKPQNQGGYG 306
++GGYG
Sbjct: 565 G---DRGGYG 571
Score = 85.1 bits (209), Expect = 7e-17
Identities = 54/135 (40%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 193 QRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG--SGDGYNG--FG 248
+RG RG G GG RG G G GG+ S GG+ G GGGYGG SG GY G G
Sbjct: 399 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 458
Query: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG-----GGQYFAKPQNQG 303
G + GGG + G Y +G +GG +GG G YGG GG ++G
Sbjct: 459 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRG 517
Query: 304 GYGVSSSSSSYGSGR 318
GYG S YG R
Sbjct: 518 GYGGDRSRGGYGGDR 532
Score = 85.1 bits (209), Expect = 7e-17
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 188 SASSSQRGRRGSGNFGGGR-GDGFGGNDNFGRGGNFSG-RGGFGGSCGGGGYGGSGDGYN 245
S+ G R G +GG R G G+GG+ RGG + G RGG G GGGYGG GY
Sbjct: 429 SSGGGYSGDRSGGGYGGDRSGGGYGGD----RGGGYGGDRGGGYGGDRGGGYGGDRGGYG 484
Query: 246 GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG--GGQYFAKPQN 301
G+ G +GG GG D G Y +G +GG G RS G YGG GG
Sbjct: 485 --GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 542
Query: 302 QGGYGVSSSSSSYGSGR 318
GGYG S YG R
Sbjct: 543 SGGYGGDRSGGGYGGDR 559
Score = 53.5 bits (127), Expect = 2e-07
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 195 GRRGSGNFGGGRG--DGFGGNDNFGRGGNFSGRGGFGGSCGGG------GYGGSGDGYNG 246
G R G +GG RG G+GG+ + G GG+ SG GG+GG GGG GYGG G N
Sbjct: 521 GDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSG-GGYGGDRGGGYGGDRGGYGGKMGGRND 579
Query: 247 FGNDGSN 253
+ ND N
Sbjct: 580 YRNDQRN 586
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 20/83 (24%)
Query: 200 GNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGG---------GYGG--SGDGY---- 244
G +GG RG G+GG D G GG+ S RGG+GG GGG GYGG SG GY
Sbjct: 503 GGYGGDRG-GYGG-DRGGYGGDRS-RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 559
Query: 245 -NGFGNDGSNFGGG-GSYNDFGN 265
G+G D +GG G ND+ N
Sbjct: 560 GGGYGGDRGGYGGKMGGRNDYRN 582
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 215 NFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGND-----GSNFGGGGSYND-----FG 264
++G+ G G+ G GYG + Y+G+G G N+ G SY +G
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYG 65
Query: 265 NYNNQSSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPQNQGGYGVSSSSSSYG 315
Y NQ + S PY GQ +QGG S YG
Sbjct: 66 GYENQKQS----------SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 108
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 190 SSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG 234
S G R G +GG RG G+GG+ RGG+GG GG
Sbjct: 543 SGGYGGDRSGGGYGGDRGGGYGGD-----------RGGYGGKMGG 576
Score = 34.7 bits (78), Expect = 0.12
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 156 HDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDN 215
HDS + Q YH+ + N +++++ RG GS GGGRG G G D
Sbjct: 136 HDSYSQNQ-QSYHSQR-ENYSHHTQDDRRDVSRYGEDNRGYGGSQ--GGGRGRG--GYDK 189
Query: 216 FGRG---GNFSG-RGGFGGSCGGGGYGGSGDGYNGFGNDGSN------FGGGGSYNDFGN 265
GRG G+ G RGGF G YG D + N +N G G S + G
Sbjct: 190 DGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGE 249
Query: 266 YNNQ 269
+ Q
Sbjct: 250 FFKQ 253
Score = 33.1 bits (74), Expect = 0.34
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 212 GNDNFGRGGNF---SGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
G DN G GG+ GRGG+ G G SG GF NFGG Y + ++
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGF----KNFGGHRDYGPRTDADS 223
Query: 269 QSSN 272
+S N
Sbjct: 224 ESDN 227
Score = 29.3 bits (64), Expect = 4.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 227 GFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
G+GGS GGG G D GS+ G G + +FG + ++GP
Sbjct: 173 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR----DYGP 217
Score = 28.5 bits (62), Expect = 8.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 248 GNDGSNFGGGGSYNDFGNYNNQS--------SNFGPMKGGNFGGRSSGPYGGGGQYFAKP 299
G+ G + G SY+ +GN +Q S +G ++G SG Y GQ ++
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSG-YSSYGQSYS-- 61
Query: 300 QNQGGYGVSSSSS 312
Q+ GGY SS
Sbjct: 62 QSYGGYENQKQSS 74
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 95.9 bits (237), Expect = 4e-20
Identities = 79/291 (27%), Positives = 113/291 (38%), Gaps = 77/291 (26%)
Query: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
R D+ + IFV G+ E + ++F+Q G I+ +I + TD+ +G
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280
Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGS 199
K +G A V+FDD S +D +++H G+ +V A + E S GRRG
Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 337
Query: 200 GNF---------------------------------------------------GGGRGD 208
G + G RG
Sbjct: 338 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 397
Query: 209 GFGGNDNF-GRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
G+GG + GRGG RGG+GG GGGYGG G+ D S G GG + G
Sbjct: 398 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 457
Query: 268 NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGR 318
++ +G +GG +GG G YGG ++GGYG YG R
Sbjct: 458 DRGGGYGGDRGGGYGGDRGGGYGG---------DRGGYG-GDRGGGYGGDR 498
Score = 86.3 bits (212), Expect = 3e-17
Identities = 54/130 (41%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 195 GRRGSGNFGGGRGDGFGGNDNFG----RGGNFSG-RGGFGGSCGGG------GYGGSGDG 243
G R G +GG RG G+GG+ G RGG + G RGG+GG GGG GYGG G
Sbjct: 448 GDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGG 507
Query: 244 YNG----FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYF 296
Y G +G D +GG S +G S +G + G +GG RS G YGG GG Y
Sbjct: 508 YGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYG 567
Query: 297 AKPQNQGGYG 306
++GGYG
Sbjct: 568 G---DRGGYG 574
Score = 85.1 bits (209), Expect = 7e-17
Identities = 54/135 (40%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 193 QRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG--SGDGYNG--FG 248
+RG RG G GG RG G G GG+ S GG+ G GGGYGG SG GY G G
Sbjct: 402 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 461
Query: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG-----GGQYFAKPQNQG 303
G + GGG + G Y +G +GG +GG G YGG GG ++G
Sbjct: 462 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRG 520
Query: 304 GYGVSSSSSSYGSGR 318
GYG S YG R
Sbjct: 521 GYGGDRSRGGYGGDR 535
Score = 85.1 bits (209), Expect = 7e-17
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 188 SASSSQRGRRGSGNFGGGR-GDGFGGNDNFGRGGNFSG-RGGFGGSCGGGGYGGSGDGYN 245
S+ G R G +GG R G G+GG+ RGG + G RGG G GGGYGG GY
Sbjct: 432 SSGGGYSGDRSGGGYGGDRSGGGYGGD----RGGGYGGDRGGGYGGDRGGGYGGDRGGYG 487
Query: 246 GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG--GGQYFAKPQN 301
G+ G +GG GG D G Y +G +GG G RS G YGG GG
Sbjct: 488 --GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 545
Query: 302 QGGYGVSSSSSSYGSGR 318
GGYG S YG R
Sbjct: 546 SGGYGGDRSGGGYGGDR 562
Score = 53.5 bits (127), Expect = 2e-07
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 195 GRRGSGNFGGGRG--DGFGGNDNFGRGGNFSGRGGFGGSCGGG------GYGGSGDGYNG 246
G R G +GG RG G+GG+ + G GG+ SG GG+GG GGG GYGG G N
Sbjct: 524 GDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSG-GGYGGDRGGGYGGDRGGYGGKMGGRND 582
Query: 247 FGNDGSN 253
+ ND N
Sbjct: 583 YRNDQRN 589
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 20/83 (24%)
Query: 200 GNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGG---------GYGG--SGDGY---- 244
G +GG RG G+GG D G GG+ S RGG+GG GGG GYGG SG GY
Sbjct: 506 GGYGGDRG-GYGG-DRGGYGGDRS-RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDR 562
Query: 245 -NGFGNDGSNFGGG-GSYNDFGN 265
G+G D +GG G ND+ N
Sbjct: 563 GGGYGGDRGGYGGKMGGRNDYRN 585
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 215 NFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGND-----GSNFGGGGSYNDFGNYNNQ 269
++G+ G G+ G GYG + Y+G+G G N+ G SY + +
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQ--SQSGY 63
Query: 270 SSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPQNQGGYGVSSSSSSYG 315
S ++G + S PY GQ +QGG S YG
Sbjct: 64 SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 111
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 190 SSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG 234
S G R G +GG RG G+GG+ RGG+GG GG
Sbjct: 546 SGGYGGDRSGGGYGGDRGGGYGGD-----------RGGYGGKMGG 579
Score = 35.8 bits (81), Expect = 0.052
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 190 SSSQRGRRGSGNFGGGRGD--GFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGF 247
S S G GS +G G+G + G N+SG +G S G Y G+
Sbjct: 16 SYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS-----QSGYSQSYGGY 70
Query: 248 GNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK---PQNQGG 304
N + YN+ G N S+ +GG YG Y + Q+QG
Sbjct: 71 ENQKQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGS 128
Query: 305 YGVSSS 310
Y S+
Sbjct: 129 YDEQSN 134
Score = 34.7 bits (78), Expect = 0.12
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 156 HDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDN 215
HDS + Q YH+ + N +++++ RG GS GGGRG G G D
Sbjct: 139 HDSYSQNQ-QSYHSQR-ENYSHHTQDDRRDVSRYGEDNRGYGGSQ--GGGRGRG--GYDK 192
Query: 216 FGRG---GNFSG-RGGFGGSCGGGGYGGSGDGYNGFGNDGSN------FGGGGSYNDFGN 265
GRG G+ G RGGF G YG D + N +N G G S + G
Sbjct: 193 DGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGE 252
Query: 266 YNNQ 269
+ Q
Sbjct: 253 FFKQ 256
Score = 33.9 bits (76), Expect = 0.20
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 235 GGYGGSG---DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGG--NFGGRSSG-- 287
G YG SG Y+ +GN GS G S + G S++G G ++G SG
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYS 64
Query: 288 -PYGG-----GGQYFAKPQNQGGYGVSSSSSSYGSGR 318
YGG Y +P N G + SS GR
Sbjct: 65 QSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGR 101
Score = 33.1 bits (74), Expect = 0.34
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 212 GNDNFGRGGNF---SGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
G DN G GG+ GRGG+ G G SG GF NFGG Y + ++
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGF----KNFGGHRDYGPRTDADS 226
Query: 269 QSSN 272
+S N
Sbjct: 227 ESDN 230
Score = 29.3 bits (64), Expect = 4.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 227 GFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
G+GGS GGG G D GS+ G G + +FG + ++GP
Sbjct: 176 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR----DYGP 220
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 95.9 bits (237), Expect = 4e-20
Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 165 QKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSG 224
+V G V +A + S G G F GGRG G G F RGG G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRG----FSRGGGDRG 122
Query: 225 RGGFGGSCGGGGYGGSGDGYNGFGNDG--SNFGGGGSYND 262
GG GGYGGS D Y+ G S+ GGSY D
Sbjct: 123 YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 TTPHKVDGRVVEPKRAVSREDSQRPG 99
VDGR + +A D++ G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 85.5 bits (210), Expect = 6e-17
Identities = 55/142 (38%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNF--GRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
S RG G GGG G G+GG G GG++ G G GG GGG GGSG G++
Sbjct: 484 SYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHS 543
Query: 246 G------FGNDGSNFG-----GGGSYNDFGNYNNQSSNFGPMKGG--NFGGRSSGPYGGG 292
G G G N+G GGGS +G + G GG FGG S G YGGG
Sbjct: 544 GGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Query: 293 GQYFAKPQNQGGYGVSSSSSSY 314
+ + GGYG S SS+
Sbjct: 604 EE---ASGSGGGYGGGSGKSSH 622
Score = 72.0 bits (175), Expect = 7e-13
Identities = 51/139 (36%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 191 SSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGG--GGYGGSGDGYNGFG 248
SS G+ G G GG G +G G GG++ G GG GG GG G GGSG Y G
Sbjct: 467 SSGAGKIGLGGRGGS-GGSYGRGSRGGSGGSYGG-GGSGGGYGGGSGSRGGSGGSYGGGS 524
Query: 249 NDGSNFGGG-GSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGV 307
G GGG G + G+ GGN+GG S G GG Y ++GG G
Sbjct: 525 GSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGG 584
Query: 308 S---------SSSSSYGSG 317
S S SYG G
Sbjct: 585 SHGGGSGFGGESGGSYGGG 603
Score = 70.1 bits (170), Expect = 2e-12
Identities = 44/111 (39%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 211 GGNDNFGRGG----NFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNY 266
GG ++F G GRGG GGS G G GGSG Y G G+ G GG GS G
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGS 519
Query: 267 NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSG 317
S G GG +GG S G + GG + G YG S S GSG
Sbjct: 520 YGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYG-GGSGSGGGSG 569
Score = 66.6 bits (161), Expect = 3e-11
Identities = 56/158 (35%), Positives = 65/158 (41%), Gaps = 48/158 (30%)
Query: 190 SSSQRGRRGSGNFGGGRGDG---------FGGNDNFGRGGNFSGRGGFGGS----CGGGG 236
SSS R G G GGG G G F + G GG FS G+GG CG GG
Sbjct: 7 SSSYLSRSGGGG-GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGG 65
Query: 237 --------YGGSGDGYN------GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGN 280
GGSG G++ GFG FGG GG Y+ G + GG
Sbjct: 66 GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGF-----------GGG 114
Query: 281 FGGRSSGPYGGG-GQYFAKPQNQGGYGVSSSSSSYGSG 317
FGG S G +GGG G F GG+G + G G
Sbjct: 115 FGGGSGGGFGGGYGSGF------GGFGGFGGGAGGGDG 146
Score = 63.9 bits (154), Expect = 2e-10
Identities = 43/92 (46%), Positives = 47/92 (51%), Gaps = 18/92 (19%)
Query: 190 SSSQRGRRGSGNFG----GGRGDGF----------GGNDNFG--RGGNFSGRGGFGGSCG 233
SS GR G G+FG GG G GF GG+ FG GG +S GGFGG G
Sbjct: 57 SSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFG 116
Query: 234 GGGYGGSGDGY-NGFGNDGSNFGGGGSYNDFG 264
GG GG G GY +GFG G FGGG D G
Sbjct: 117 GGSGGGFGGGYGSGFGGFG-GFGGGAGGGDGG 147
Score = 62.0 bits (149), Expect = 7e-10
Identities = 41/98 (41%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGR---GGFGGSCGGGGYGGSGDGYN 245
+SSS G S G G G FG + G GG FS GGFGG G G G SG GY+
Sbjct: 48 SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFG-GASGGGYS 106
Query: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG 283
G G FGGG G Y + FG GG GG
Sbjct: 107 SSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGG 144
Score = 54.7 bits (130), Expect = 1e-07
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 215 NFGRGGNFSGRGGFGGSCGGGGYGGSGDGY--NGFGNDGSNFGGGGSYNDFGNYNNQSSN 272
N GG G G GG GGSG Y G G ++GGGGS +G +
Sbjct: 456 NLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515
Query: 273 FGPMKGG--NFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSG 317
G GG GG S G YGGG + GG+ S +YG G
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS-GGSGGNYGGG 561
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 255 GGGGSY-NDFGNYNNQSSNFGPMKGGNFGGR--SSGPYGGGGQ------------YFAKP 299
GGGG G+ + S F GG GGR SS YGGG Y
Sbjct: 16 GGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGG 75
Query: 300 QNQGGYGVSSSSSSYGSGRR 319
+ GG+ SS +G G R
Sbjct: 76 GSGGGFSASSLGGGFGGGSR 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,032,774
Number of Sequences: 37866
Number of extensions: 789825
Number of successful extensions: 16337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 3510
Number of HSP's gapped (non-prelim): 4456
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.