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Search of human proteins with 58331150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331150 mitochondrial ribosomal protein S30 [Homo sapiens]
(439 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331150 mitochondrial ribosomal protein S30 [Homo sapiens] 903 0.0
gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens] 45 2e-04
gi|30089948 protein phosphatase 1E [Homo sapiens] 38 0.021
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 37 0.046
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 37 0.046
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 36 0.061
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 35 0.14
gi|167234422 hematopoietic cell-specific Lyn substrate 1 [Homo s... 35 0.14
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 35 0.18
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 35 0.18
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 35 0.18
gi|14327896 cyclin B1 [Homo sapiens] 34 0.23
gi|87299628 biorientation of chromosomes in cell division 1-like... 34 0.23
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 33 0.39
gi|30840978 neuroligin 2 [Homo sapiens] 33 0.39
gi|122937271 WAS protein homolog associated with actin, golgi me... 33 0.67
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 33 0.67
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 33 0.67
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 33 0.67
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 32 0.88
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 32 0.88
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 32 0.88
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 32 0.88
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 32 0.88
gi|145309324 FH2 domain containing 1 [Homo sapiens] 32 1.1
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 1.5
gi|4885237 forkhead box C2 [Homo sapiens] 32 1.5
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 32 1.5
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 32 1.5
gi|4505419 nucleolar protein 3 [Homo sapiens] 32 1.5
>gi|58331150 mitochondrial ribosomal protein S30 [Homo sapiens]
Length = 439
Score = 903 bits (2334), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MAAARCWRPLLRGPRLSLHTAANAAATATETTCQDVAATPVARYPPIVASMTADSKAARL 60
MAAARCWRPLLRGPRLSLHTAANAAATATETTCQDVAATPVARYPPIVASMTADSKAARL
Sbjct: 1 MAAARCWRPLLRGPRLSLHTAANAAATATETTCQDVAATPVARYPPIVASMTADSKAARL 60
Query: 61 RRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPP 120
RRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPP
Sbjct: 61 RRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPP 120
Query: 121 PPAEPEPEPEPEPEPALDLAALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQL 180
PPAEPEPEPEPEPEPALDLAALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQL
Sbjct: 121 PPAEPEPEPEPEPEPALDLAALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQL 180
Query: 181 VSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQ 240
VSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQ
Sbjct: 181 VSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQ 240
Query: 241 IRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFH 300
IRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFH
Sbjct: 241 IRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFH 300
Query: 301 LLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAV 360
LLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAV
Sbjct: 301 LLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAV 360
Query: 361 ITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQ 420
ITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQ
Sbjct: 361 ITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQ 420
Query: 421 IVHFLLNRPKEEKSQLLEN 439
IVHFLLNRPKEEKSQLLEN
Sbjct: 421 IVHFLLNRPKEEKSQLLEN 439
>gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens]
Length = 423
Score = 44.7 bits (104), Expect = 2e-04
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 285 GSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQG 344
G + P Y HT + L LR RL DQ+ RA I F AQA
Sbjct: 278 GFQEGYPYPYPHTLYLLDKANLRPHRLQ----PDQL----RAKMILFAFGSALAQARLL- 328
Query: 345 FWSEADVT-RPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYE 403
+ ++A V +P V Q+V TDG+ F F +QLN TT D N KN+ W + LY+
Sbjct: 329 YGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLN----TTDLDCNEGVKNLAWVDSDQLLYQ 384
>gi|30089948 protein phosphatase 1E [Homo sapiens]
Length = 755
Score = 37.7 bits (86), Expect = 0.021
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 117 GLPPPPAEPEPEPEPEPEPALDLAALRAVACDCLLQE 153
G P P EPEPEPEPE EP + + A A + ++E
Sbjct: 29 GEPEPEPEPEPEPEPESEPEPEPELVEAEAAEASVEE 65
Score = 30.4 bits (67), Expect = 3.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 103 DRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPEP 135
++ Y+ F + +FL P EPEPEPEPEP
Sbjct: 8 EKTYRRFLE-LFLGEFRGPCGGGEPEPEPEPEP 39
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 36.6 bits (83), Expect = 0.046
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 116 SGLPPPPAEPEPEPEPEPEPA 136
+G P EPEPEPEPEPEPA
Sbjct: 4 AGAAGPGPEPEPEPEPEPEPA 24
Score = 34.3 bits (77), Expect = 0.23
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P P EPEPEPEP PEP
Sbjct: 11 PEPEPEPEPEPEPAPEP 27
Score = 34.3 bits (77), Expect = 0.23
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P P EPEPEP PEPEP
Sbjct: 13 PEPEPEPEPEPAPEPEP 29
Score = 34.3 bits (77), Expect = 0.23
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P P EPEP PEPEPEP
Sbjct: 15 PEPEPEPEPAPEPEPEP 31
Score = 33.9 bits (76), Expect = 0.30
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P P EPEPEPEPEP P
Sbjct: 9 PGPEPEPEPEPEPEPAP 25
Score = 32.7 bits (73), Expect = 0.67
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P P EP PEPEPEP+P
Sbjct: 17 PEPEPEPAPEPEPEPKP 33
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 36.6 bits (83), Expect = 0.046
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P P EPEPEPEPEPEP
Sbjct: 506 PEPEPEPEPEPEPEPEP 522
Score = 33.9 bits (76), Expect = 0.30
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 119 PPPPAEPEPEPEPEPE 134
P P EPEPEPEPEPE
Sbjct: 508 PEPEPEPEPEPEPEPE 523
Score = 33.5 bits (75), Expect = 0.39
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 9/28 (32%)
Query: 117 GLPPPPA---------EPEPEPEPEPEP 135
G+ PP A EPEPEPEPEPEP
Sbjct: 489 GIHPPQAQSKIEELEQEPEPEPEPEPEP 516
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 36.2 bits (82), Expect = 0.061
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 117 GLPPPPAEPEPEPEPEPEP 135
G P P +EPEPEPEPEP P
Sbjct: 101 GSPEPESEPEPEPEPEPVP 119
Score = 34.7 bits (78), Expect = 0.18
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 118 LPPPPAEPEPEPEPEPEPA 136
+P PP EP+PEP+P P+PA
Sbjct: 118 VPVPPPEPQPEPQPLPDPA 136
Score = 32.0 bits (71), Expect = 1.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 118 LPPPPAEPEPEPEPEPEPALDL 139
+PPP +PEP+P P+P P +L
Sbjct: 120 VPPPEPQPEPQPLPDPAPLPEL 141
Score = 31.2 bits (69), Expect = 1.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAAL 142
P P P PEP+PEP+P D A L
Sbjct: 115 PEPVPVPPPEPQPEPQPLPDPAPL 138
Score = 29.6 bits (65), Expect = 5.7
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P EPE EPEPEPEP
Sbjct: 99 PVGSPEPESEPEPEPEP 115
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 35.0 bits (79), Expect = 0.14
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 118 LPPPPAEPEPEPEPEPEPAL 137
LPPP + P+ +PEPEPEP L
Sbjct: 986 LPPPESPPKVQPEPEPEPGL 1005
>gi|167234422 hematopoietic cell-specific Lyn substrate 1 [Homo
sapiens]
Length = 486
Score = 35.0 bits (79), Expect = 0.14
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 119 PPPPAEPEPEPEPEPEPALD 138
P AEPEPEPEPEPEP D
Sbjct: 358 PVYEAEPEPEPEPEPEPEND 377
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 34.7 bits (78), Expect = 0.18
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 115 LSGLPPPPAEPEPEPEPEPEPA 136
LS PPPPA P P P P P PA
Sbjct: 120 LSAPPPPPARPPPPPPPPPPPA 141
>gi|55956904 mitogen-activated protein kinase kinase kinase 4
isoform a [Homo sapiens]
Length = 1608
Score = 34.7 bits (78), Expect = 0.18
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAA 141
PPPP P PEPE E EP LAA
Sbjct: 28 PPPPPPPPPEPETESEPECCLAA 50
>gi|55956902 mitogen-activated protein kinase kinase kinase 4
isoform b [Homo sapiens]
Length = 1558
Score = 34.7 bits (78), Expect = 0.18
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAA 141
PPPP P PEPE E EP LAA
Sbjct: 28 PPPPPPPPPEPETESEPECCLAA 50
>gi|14327896 cyclin B1 [Homo sapiens]
Length = 433
Score = 34.3 bits (77), Expect = 0.23
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 118 LPPPPAEPEPEPEPEPEP 135
+P P +EP PEPEPEPEP
Sbjct: 90 VPVPVSEPVPEPEPEPEP 107
Score = 28.9 bits (63), Expect = 9.7
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 119 PPPPAEPEPEPEP------EPEPAL 137
P P EPEPEPEP PEP L
Sbjct: 97 PVPEPEPEPEPEPVKEEKLSPEPIL 121
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 34.3 bits (77), Expect = 0.23
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 119 PPPPAEPEPEPEPEPEP 135
PPPPA P P P+P+P+P
Sbjct: 9 PPPPAPPPPPPQPQPQP 25
Score = 30.0 bits (66), Expect = 4.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 119 PPPPAEPEPEPEPEP 133
PPPP +P+P+P P P
Sbjct: 15 PPPPPQPQPQPPPPP 29
Score = 29.6 bits (65), Expect = 5.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 120 PPPAEPEPEPEPEPEP 135
PPP P+P+P+P P P
Sbjct: 14 PPPPPPQPQPQPPPPP 29
Score = 29.3 bits (64), Expect = 7.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 119 PPPPAEPEPEPEPEPEP 135
PP P P P+P+P+P P
Sbjct: 11 PPAPPPPPPQPQPQPPP 27
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 33.5 bits (75), Expect = 0.39
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 120 PPPAEPEPEPEPEPEPALDLAALRAV 145
PPP++P+P P P P PA L +L +V
Sbjct: 785 PPPSQPQPPPPPPPSPASLLKSLASV 810
Score = 31.6 bits (70), Expect = 1.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 118 LPPPPAEPEPEPEPEPEPAL 137
LPPPP P P P P P P L
Sbjct: 246 LPPPPLPPPPPPPPPPPPPL 265
>gi|30840978 neuroligin 2 [Homo sapiens]
Length = 835
Score = 33.5 bits (75), Expect = 0.39
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
PPPPA PEPEPEP P
Sbjct: 643 PPPPATLPPEPEPEPGP 659
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 32.7 bits (73), Expect = 0.67
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 118 LPPPPAEPEPEPEPEPEPALDLAAL 142
LPPPP P P P P P P L AL
Sbjct: 638 LPPPPPPPPPPPPPPPPPPPPLRAL 662
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 96 QTFALNADRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPEPALDLAA 141
Q F D+ + ++ + L PPPP P P P P P P L++
Sbjct: 619 QVFVPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPPPPPPLRALSS 664
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 32.7 bits (73), Expect = 0.67
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 109 FTKTVFLSGLPPPPAEPEPEPEPEPEPA 136
F T LPPPP P P P P P PA
Sbjct: 609 FRWTSLTRELPPPPPAPPPPPAPSPPPA 636
Score = 30.8 bits (68), Expect = 2.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 119 PPPPAEPEPEPEPEPEPA 136
PPPP P P P P P PA
Sbjct: 432 PPPPVSPPPLPSPPPPPA 449
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 113 VFLSGLPPPPAEPEPEPEPEPEPALDLAA 141
++ S L PPP PEPEP PA D A
Sbjct: 661 IYESVLTPPPLGAPEAPEPEPPPADDSPA 689
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 32.7 bits (73), Expect = 0.67
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 118 LPPPPAEPEPEPEPEPE 134
L P AEPEP+PEPEPE
Sbjct: 187 LEEPVAEPEPDPEPEPE 203
Score = 29.6 bits (65), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 119 PPPPAEPEPEPEPEPEPALDL 139
P EP+PEPEPE EP ++
Sbjct: 190 PVAEPEPDPEPEPEQEPVSEI 210
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 32.7 bits (73), Expect = 0.67
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 118 LPPPPAEPEPEPEPEPE 134
L P AEPEP+PEPEPE
Sbjct: 187 LEEPVAEPEPDPEPEPE 203
Score = 29.6 bits (65), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 119 PPPPAEPEPEPEPEPEPALDL 139
P EP+PEPEPE EP ++
Sbjct: 190 PVAEPEPDPEPEPEQEPVSEI 210
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 32.3 bits (72), Expect = 0.88
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 116 SGLPPPPAEPEPEPEPEPEPALDLAALRAVA 146
+G PPPP P P P P P P L + + A A
Sbjct: 167 AGGPPPPPGPPPPPGPPPPPGLPPSGVPAAA 197
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAALRAV-ACDCLL 151
PPPP P P P P P P L R + AC LL
Sbjct: 32 PPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLLL 65
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAALRAV-ACDCLL 151
PPPP P P P P P P L R + AC LL
Sbjct: 32 PPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLLL 65
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAALRAV-ACDCLL 151
PPPP P P P P P P L R + AC LL
Sbjct: 32 PPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLLL 65
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 32.3 bits (72), Expect = 0.88
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 115 LSGLPPPPAEPEPEPEPEP 133
L+GLPPPP P P P P P
Sbjct: 406 LAGLPPPPPPPPPPPPPPP 424
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 114 FLSGLPPPPAEPEPEPEPEPEP 135
F+ G PPPA P P P P P P
Sbjct: 24 FMIGQTPPPAPPPPPPPPPPSP 45
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 31.6 bits (70), Expect = 1.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 PPPPAEPEPEPEPEPEPA 136
PPPPA P+ +P P P PA
Sbjct: 25 PPPPAPPQQQPPPPPPPA 42
>gi|4885237 forkhead box C2 [Homo sapiens]
Length = 501
Score = 31.6 bits (70), Expect = 1.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 119 PPPPAEPEPEPEPEPEPALDLAA 141
PPPP P+P+P P+P A AA
Sbjct: 400 PPPPPAPQPQPTPQPGAAAAQAA 422
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 31.6 bits (70), Expect = 1.5
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 120 PPPAEPEPEPEPEPEPA 136
PP EPEPEPE EPE A
Sbjct: 4483 PPEPEPEPEPELEPEKA 4499
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 31.6 bits (70), Expect = 1.5
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 120 PPPAEPEPEPEPEPEPA 136
PP EPEPEPE EPE A
Sbjct: 4488 PPEPEPEPEPELEPEKA 4504
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 31.6 bits (70), Expect = 1.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 119 PPPPAEPEPEPEPEPE 134
P P EPEP+PEPEP+
Sbjct: 183 PEPELEPEPDPEPEPD 198
Score = 30.4 bits (67), Expect = 3.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 119 PPPPAEPEPEPEPEPEP 135
P AEPEPE EPEP+P
Sbjct: 177 PEAEAEPEPELEPEPDP 193
Score = 30.0 bits (66), Expect = 4.3
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 123 AEPEPEPEPEPEP 135
AEPEPEPEPE EP
Sbjct: 165 AEPEPEPEPELEP 177
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 121 PPAEPEPEPEPEPEP 135
P E EPEP+PEPEP
Sbjct: 183 PEPELEPEPDPEPEP 197
Score = 28.9 bits (63), Expect = 9.7
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 116 SGLPPPP-------AEPEPEPEPEPEPALD 138
SG P P A E EPEPEPEP L+
Sbjct: 147 SGTPEEPEPELEAEASKEAEPEPEPEPELE 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,701,427
Number of Sequences: 37866
Number of extensions: 861272
Number of successful extensions: 9650
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 8193
Number of HSP's gapped (non-prelim): 1147
length of query: 439
length of database: 18,247,518
effective HSP length: 105
effective length of query: 334
effective length of database: 14,271,588
effective search space: 4766710392
effective search space used: 4766710392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.