Guide to the Human Genome
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Name: MRPS30 Sequence: fasta or formatted (439aa) NCBI GI: 58331150
Description:

mitochondrial ribosomal protein S30

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         45           4
 C cysteine            2.5         11           2
 D aspartate           5.5         24           2
 E glutamate           6.2         27           2
 F phenylalanine       4.6         20           2
 G glycine             3.0         13           1
 H histidine           2.5         11           1
 I isoleucine          4.6         20           2
 K lysine              4.3         19           1
 L leucine            10.3         45           2
 M methionine          1.4          6           1
 N asparagine          3.6         16           2
 P proline             7.5         33           4
 Q glutamine           5.2         23           1
 R arginine            8.0         35           5
 S serine              4.1         18           1
 T threonine           5.5         24           2
 V valine              5.7         25           2
 W tryptophan          1.6          7           1
 Y tyrosine            3.9         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S30 
MRPL37                0.023   mitochondrial ribosomal protein L37 
PPM1E                 0.015   protein phosphatase 1E 
SASH1                 0.014   SAM and SH3 domain containing 1 
LAG3                  0.014   lymphocyte-activation protein 3 precursor 
SLC16A2               0.013   solute carrier family 16, member 2 
PELP1                 0.011   proline, glutamic acid and leucine rich protein 1 [...
HCLS1                 0.011   hematopoietic cell-specific Lyn substrate 1 
USP51                 0.011   ubiquitin specific protease 51 
MAP3K4                0.011   mitogen-activated protein kinase kinase kinase 4 iso...
MAP3K4                0.011   mitogen-activated protein kinase kinase kinase 4 iso...
CCNB1                 0.010   cyclin B1 
BOD1L                 0.010   biorientation of chromosomes in cell division 1-like...
KDM6B                 0.009   lysine (K)-specific demethylase 6B 
NLGN2                 0.009   neuroligin 2 
WHAMM                 0.009   WAS protein homolog associated with actin, golgi me...
MLL4                  0.009   myeloid/lymphoid or mixed-lineage leukemia 4 
G3BP1                 0.009   Ras-GTPase-activating protein SH3-domain-binding prot...
G3BP1                 0.009   Ras-GTPase-activating protein SH3-domain-binding pro...
VASP                  0.008   vasodilator-stimulated phosphoprotein 
FLJ20021              0.008   PREDICTED: hypothetical protein 
FLJ20021              0.008   PREDICTED: hypothetical protein 
FLJ20021              0.008   PREDICTED: hypothetical protein 
ZIC5                  0.008   zinc finger protein of the cerebellum 5 
FHDC1                 0.008   FH2 domain containing 1 
HCN2                  0.008   hyperpolarization activated cyclic nucleotide-gated...
FOXC2                 0.008   forkhead box C2 
RYR1                  0.008   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.008   skeletal muscle ryanodine receptor isoform 1 
NOL3                  0.008   nucleolar protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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