Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5803167
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens]
(501 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens] 1025 0.0
gi|148664216 hypothetical protein LOC163859 [Homo sapiens] 77 5e-14
gi|155030242 WD repeat domain 60 [Homo sapiens] 43 6e-04
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 41 0.003
gi|17975763 myelin transcription factor 1 [Homo sapiens] 39 0.008
gi|33946313 ninein isoform 4 [Homo sapiens] 39 0.008
gi|33946321 ninein isoform 5 [Homo sapiens] 39 0.008
gi|148536871 ninein isoform 1 [Homo sapiens] 39 0.008
gi|148536869 ninein isoform 2 [Homo sapiens] 39 0.008
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 39 0.014
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi... 39 0.014
gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens] 38 0.025
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 37 0.032
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 37 0.055
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 37 0.055
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 36 0.071
gi|156071452 nardilysin isoform b [Homo sapiens] 36 0.071
gi|156071450 nardilysin isoform a [Homo sapiens] 36 0.071
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 36 0.071
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 36 0.071
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 36 0.093
gi|20336244 proprotein convertase subtilisin/kexin type 2 [Homo ... 36 0.093
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 36 0.093
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 35 0.12
gi|118600967 shroom family member 4 [Homo sapiens] 35 0.12
gi|110349797 homer 2 isoform 4 [Homo sapiens] 35 0.12
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens] 35 0.12
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens] 35 0.12
gi|21735569 claspin [Homo sapiens] 35 0.16
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 35 0.16
>gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens]
Length = 501
Score = 1025 bits (2651), Expect = 0.0
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL 60
METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
Sbjct: 1 METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL 60
Query: 61 YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP 120
YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
Sbjct: 61 YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP 120
Query: 121 SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA 180
SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
Sbjct: 121 SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA 180
Query: 181 EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA 240
EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA
Sbjct: 181 EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA 240
Query: 241 GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL 300
GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
Sbjct: 241 GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL 300
Query: 301 FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE 360
FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE
Sbjct: 301 FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE 360
Query: 361 EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK 420
EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
Sbjct: 361 EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK 420
Query: 421 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE 480
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
Sbjct: 421 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE 480
Query: 481 DSSGNVVNKKTYEDLKRQGLL 501
DSSGNVVNKKTYEDLKRQGLL
Sbjct: 481 DSSGNVVNKKTYEDLKRQGLL 501
>gi|148664216 hypothetical protein LOC163859 [Homo sapiens]
Length = 451
Score = 76.6 bits (187), Expect = 5e-14
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 244 LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAK 303
+DL AF+S EL LGL++LK L+ALGLKCGGTL+ERA RLFS +G + E +D +LFAK
Sbjct: 385 IDLLAFTSVAELELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAK 444
Query: 304 NPKSK 308
K K
Sbjct: 445 PLKGK 449
>gi|155030242 WD repeat domain 60 [Homo sapiens]
Length = 1066
Score = 43.1 bits (100), Expect = 6e-04
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 306 KSKGTKRDTERNKDIAFLEAQIYEYV---EILGEQ---RHLTHENVQRKQARTGEEREEE 359
KS +D E+ KD + ++ + V +LG++ R L E +RK + R EE
Sbjct: 113 KSHSRGKDREKEKDRRARKEELRQTVAHHNLLGQETRDRQLL-ERAERKGRSVSKVRSEE 171
Query: 360 EEEQISESESEDEENEIIYNPKNLPLGWDGK--PIPYWLYKLHG 401
++E +SE DE+ E Y + L G D K P+ YWLYK G
Sbjct: 172 KDE---DSERGDEDRERRYRERKLQYG-DSKDNPLKYWLYKEEG 211
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 333 ILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPI 392
++GE+ E + Q GEE EEEEEE+ E E E+EE E P+ P G G
Sbjct: 105 LVGEEETEREEEDEEIQEEGGEEEEEEEEEEEEEEEEEEEEEE---QPRAGPQGSGGNHE 161
Query: 393 PYWL 396
Y L
Sbjct: 162 QYSL 165
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 301 FAKNPKSKGTKRDTER-NKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEE 359
F + ++ D E ++DI + +E+ + GE L H + ++ EE +EE
Sbjct: 62 FPNDASTENRSSDQESASEDIELESLEDFEHFLMSGES--LFHYPLVGEEETEREEEDEE 119
Query: 360 EEEQISESESEDEENE 375
+E+ E E E+EE E
Sbjct: 120 IQEEGGEEEEEEEEEE 135
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 39.3 bits (90), Expect = 0.008
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 314 TERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEE 373
TER++D+ + E ++ L+HE ++ EE EE+EEE+ E E E+EE
Sbjct: 229 TERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEE 288
Query: 374 NE 375
E
Sbjct: 289 EE 290
Score = 35.8 bits (81), Expect = 0.093
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 333 ILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
IL + E + ++ EE EEEEEE+ E E E+EE E
Sbjct: 254 ILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEE 296
Score = 35.0 bits (79), Expect = 0.16
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
E+ E+ + ++ EE EEEEEE+ E E E+EE E
Sbjct: 266 EEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 305
Score = 34.3 bits (77), Expect = 0.27
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 305 PKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQI 364
P+S E +K L + + E E+ E + ++ EE EEEEEE+
Sbjct: 237 PQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEE 296
Query: 365 SESESEDEE 373
E E E+EE
Sbjct: 297 EEEEEEEEE 305
Score = 34.3 bits (77), Expect = 0.27
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 294 ESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTG 353
+SL+ + ++ K KG E +++ E+ E ++
Sbjct: 238 QSLEDAASEESSKQKGILSHEEEDEE----------------EEEEEEEEEEDEEEEEEE 281
Query: 354 EEREEEEEEQISESESEDEENE 375
EE EEEEEE+ E E E+EE E
Sbjct: 282 EEEEEEEEEEEEEEEEEEEEEE 303
Score = 34.3 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
E+ E + ++ EE EEEEEE+ E E E+EE E
Sbjct: 265 EEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 304
Score = 33.5 bits (75), Expect = 0.46
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
E+ + + ++ EE EEEEEE+ E E E+EE E
Sbjct: 267 EEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 306
Score = 32.7 bits (73), Expect = 0.79
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 313 DTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDE 372
++ + K I E + E E E+ E + ++ EE EEEEEE+ E E E+E
Sbjct: 247 ESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 306
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 39.3 bits (90), Expect = 0.008
Identities = 79/375 (21%), Positives = 150/375 (40%), Gaps = 43/375 (11%)
Query: 2 ETILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLY 61
E L Q R +E + R++ E+ ++ R Q R EV N +
Sbjct: 536 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ-GRVLRLPLKNSPSEEVEANSGGI- 593
Query: 62 DDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPS 121
+ + GL EE N ++ E AE ++Q+KE H + +IC + +E E+ ++ E
Sbjct: 594 EPEHGLGSEECNPLNMSIE-AELV--IEQMKEQHHR---DICC-LRLELEDKVRHYEKQL 646
Query: 122 EEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAE 181
+E + E R+ + K I+ +E + ++ + R E
Sbjct: 647 DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE 706
Query: 182 YKRYLEMLLEYLQDYTDRVKPLQDQNELFGKI---QAEFEKKWENGTFPGWPKETSSALT 238
K+ L++ LE + + LQ + EL ++ QA FE++ E W +E LT
Sbjct: 707 -KKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLT 765
Query: 239 HAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDT 298
+S E +L + L+ LL E+ QR +G+
Sbjct: 766 QELEQFHQEQLTSLVEKHTLEKEELRKELL-----------EKHQRELQ-EGRE------ 807
Query: 299 SLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREE 358
K +TE N+ + +EAQ + + E+ ++++ + + ++ +E
Sbjct: 808 ------------KMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQE 855
Query: 359 EEEEQISESESEDEE 373
++ E+ S+ E E +E
Sbjct: 856 QQREEKSQWEFEKDE 870
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 39.3 bits (90), Expect = 0.008
Identities = 79/375 (21%), Positives = 150/375 (40%), Gaps = 43/375 (11%)
Query: 2 ETILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLY 61
E L Q R +E + R++ E+ ++ R Q R EV N +
Sbjct: 530 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ-GRVLRLPLKNSPSEEVEANSGGI- 587
Query: 62 DDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPS 121
+ + GL EE N ++ E AE ++Q+KE H + +IC + +E E+ ++ E
Sbjct: 588 EPEHGLGSEECNPLNMSIE-AELV--IEQMKEQHHR---DICC-LRLELEDKVRHYEKQL 640
Query: 122 EEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAE 181
+E + E R+ + K I+ +E + ++ + R E
Sbjct: 641 DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE 700
Query: 182 YKRYLEMLLEYLQDYTDRVKPLQDQNELFGKI---QAEFEKKWENGTFPGWPKETSSALT 238
K+ L++ LE + + LQ + EL ++ QA FE++ E W +E LT
Sbjct: 701 -KKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLT 759
Query: 239 HAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDT 298
+S E +L + L+ LL E+ QR +G+
Sbjct: 760 QELEQFHQEQLTSLVEKHTLEKEELRKELL-----------EKHQRELQ-EGRE------ 801
Query: 299 SLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREE 358
K +TE N+ + +EAQ + + E+ ++++ + + ++ +E
Sbjct: 802 ------------KMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQE 849
Query: 359 EEEEQISESESEDEE 373
++ E+ S+ E E +E
Sbjct: 850 QQREEKSQWEFEKDE 864
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 39.3 bits (90), Expect = 0.008
Identities = 79/375 (21%), Positives = 150/375 (40%), Gaps = 43/375 (11%)
Query: 2 ETILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLY 61
E L Q R +E + R++ E+ ++ R Q R EV N +
Sbjct: 530 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ-GRVLRLPLKNSPSEEVEANSGGI- 587
Query: 62 DDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPS 121
+ + GL EE N ++ E AE ++Q+KE H + +IC + +E E+ ++ E
Sbjct: 588 EPEHGLGSEECNPLNMSIE-AELV--IEQMKEQHHR---DICC-LRLELEDKVRHYEKQL 640
Query: 122 EEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAE 181
+E + E R+ + K I+ +E + ++ + R E
Sbjct: 641 DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE 700
Query: 182 YKRYLEMLLEYLQDYTDRVKPLQDQNELFGKI---QAEFEKKWENGTFPGWPKETSSALT 238
K+ L++ LE + + LQ + EL ++ QA FE++ E W +E LT
Sbjct: 701 -KKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLT 759
Query: 239 HAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDT 298
+S E +L + L+ LL E+ QR +G+
Sbjct: 760 QELEQFHQEQLTSLVEKHTLEKEELRKELL-----------EKHQRELQ-EGRE------ 801
Query: 299 SLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREE 358
K +TE N+ + +EAQ + + E+ ++++ + + ++ +E
Sbjct: 802 ------------KMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQE 849
Query: 359 EEEEQISESESEDEE 373
++ E+ S+ E E +E
Sbjct: 850 QQREEKSQWEFEKDE 864
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 39.3 bits (90), Expect = 0.008
Identities = 79/375 (21%), Positives = 150/375 (40%), Gaps = 43/375 (11%)
Query: 2 ETILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLY 61
E L Q R +E + R++ E+ ++ R Q R EV N +
Sbjct: 530 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ-GRVLRLPLKNSPSEEVEANSGGI- 587
Query: 62 DDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPS 121
+ + GL EE N ++ E AE ++Q+KE H + +IC + +E E+ ++ E
Sbjct: 588 EPEHGLGSEECNPLNMSIE-AELV--IEQMKEQHHR---DICC-LRLELEDKVRHYEKQL 640
Query: 122 EEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAE 181
+E + E R+ + K I+ +E + ++ + R E
Sbjct: 641 DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE 700
Query: 182 YKRYLEMLLEYLQDYTDRVKPLQDQNELFGKI---QAEFEKKWENGTFPGWPKETSSALT 238
K+ L++ LE + + LQ + EL ++ QA FE++ E W +E LT
Sbjct: 701 -KKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLT 759
Query: 239 HAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDT 298
+S E +L + L+ LL E+ QR +G+
Sbjct: 760 QELEQFHQEQLTSLVEKHTLEKEELRKELL-----------EKHQRELQ-EGRE------ 801
Query: 299 SLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREE 358
K +TE N+ + +EAQ + + E+ ++++ + + ++ +E
Sbjct: 802 ------------KMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQE 849
Query: 359 EEEEQISESESEDEE 373
++ E+ S+ E E +E
Sbjct: 850 QQREEKSQWEFEKDE 864
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 38.5 bits (88), Expect = 0.014
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 300 LFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEE 359
++ KN S G + R + E + + + E+ E V+ ++ +E +EE
Sbjct: 85 IWGKNDLSAGNRLSVARTAALVAEECSAQQGLPVEEEEVEEEEEEVEEEEKEEEKEEDEE 144
Query: 360 EEEQISESESEDEENE 375
EEE+ E E ++EE E
Sbjct: 145 EEEKEEEKEEDEEEEE 160
>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo
sapiens]
Length = 1002
Score = 38.5 bits (88), Expect = 0.014
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 13/201 (6%)
Query: 9 RRYHEEKERLMDV-MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGL 67
R E++ERL+++ A E+ +++ R QI MQ+ +S L + K+ L
Sbjct: 495 RLNREQEERLLELERAAELWGEQAEARRQI-----LETMQNDRTTISRALSQNRELKEQL 549
Query: 68 RKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNL 127
+ + + NE E + L+ + R+ ++ + + EL + E S+EAQ+L
Sbjct: 550 AELQSGFVKLTNENMEITSALQSEQHVKRELGKKLG-ELQEKLSELKETVELKSQEAQSL 608
Query: 128 VEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLE 187
+ D+ YL Y+ SEK L + QL D +++ A+ K E
Sbjct: 609 QQQRDQ-----YLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVD-QLQQQEAQGKAVAE 662
Query: 188 MLLEYLQDYTDRVKPLQDQNE 208
M + LQ+ +R++ QN+
Sbjct: 663 MARQELQETQERLEAATQQNQ 683
>gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens]
Length = 699
Score = 37.7 bits (86), Expect = 0.025
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 335 GEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
GE+R L H+ Q R G E EE+EEE+ E E ++E+ E
Sbjct: 255 GEERRLAHQ-----QQRQGREEEEDEEEEGEEGEEDEEDEE 290
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 37.4 bits (85), Expect = 0.032
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 279 EERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQR 338
E+ Q + ST+ S +S +SK + ++ + Q+ E L ++
Sbjct: 1019 EKEEQEILSTRANSRQS------PAKVQSKNKYLHSPESRPVTGERGQLLE----LSKES 1068
Query: 339 HLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNL 383
E + ++ EE EEE+EE+ E E E+EE I +P L
Sbjct: 1069 SEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRL 1113
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 354 EEREEEEEEQISESESEDEENE 375
EE EEEEEE+ E E E EE E
Sbjct: 1352 EEEEEEEEEEEEEEEEEGEEEE 1373
Score = 29.3 bits (64), Expect = 8.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 354 EEREEEEEEQISESESEDEENE 375
EE EEEEEE+ E E E+ E E
Sbjct: 1351 EEEEEEEEEEEEEEEEEEGEEE 1372
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 36.6 bits (83), Expect = 0.055
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 39/218 (17%)
Query: 2 ETILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRD-- 59
E + EQ+ R E++ERL + + + ++ LR+Q + R R ++R E LR+
Sbjct: 199 ERLREQEERLREQEERLRE-QEERLCEQEERLREQ---EERLREQEERLCEQEERLREHE 254
Query: 60 --LYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVP---MSVEFEELL 114
L + ++ L ++E E RL + +E R+ +C + + E L
Sbjct: 255 ERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLREQEERLCEQEERLREQEERLC 314
Query: 115 KARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIP 174
+ E E+ + L E G R L+ EKL +
Sbjct: 315 EQEERLREQEERLCEQEKLPGQERLLE------------EVEKL--------------LE 348
Query: 175 KERKNAEYKRYL--EMLLEYLQDYTDRVKPLQDQNELF 210
+ER+ E +R L E LLE +++ ++ + Q L+
Sbjct: 349 QERRQEEQERLLERERLLEEVEELLEQERLRQQDERLW 386
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 278 LEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQ 337
L E+ +RL + + E + + + +R E + + E ++ E E L EQ
Sbjct: 215 LREQEERLCEQEERLREQEERLREQEERLCEQEERLREHEERLCEQEERLCEQEERLREQ 274
Query: 338 RHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
HE Q ++ EER E+EE++ E E E E
Sbjct: 275 EERLHE--QEERLCEQEERLREQEERLCEQEERLREQE 310
Score = 30.4 bits (67), Expect = 3.9
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 297 DTSLFAKNPKSKGTK--RDTERNKDIAFL----EAQIYEYVEILGEQRHLTHENVQR--- 347
+T+ K +S G + + E N+ ++ L E ++ E E L EQ E +R
Sbjct: 165 ETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEERLREQEERLCE 224
Query: 348 --KQARTGEEREEEEEEQISESESEDEENE 375
++ R EER E+EE++ E E E+E
Sbjct: 225 QEERLREQEERLREQEERLCEQEERLREHE 254
Score = 29.3 bits (64), Expect = 8.7
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 278 LEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQ 337
L E+ +RL + + E + + + +R E+ + + E +++E E L EQ
Sbjct: 229 LREQEERLREQEERLCEQEERLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQ 288
Query: 338 RHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
E +R + EER E+EE++ E E E E
Sbjct: 289 EERLREQEERLCEQ--EERLREQEERLCEQEERLREQE 324
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 36.6 bits (83), Expect = 0.055
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 273 KCGGTLEERAQRLFSTKGKSLESLDTS---------------LFAKNPKSKGTKRDTERN 317
K GG + + T+GK E D + + A++ + KG + +TE
Sbjct: 772 KSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQ 831
Query: 318 KDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEII 377
+ A + + + + + + ++ E+ EEEEEE+ E E E+EE E
Sbjct: 832 ELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEK 891
Query: 378 YNPKNLPLGW 387
N + L L W
Sbjct: 892 GNEEPLSLDW 901
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 36.2 bits (82), Expect = 0.071
Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 31/236 (13%)
Query: 174 PKERKNAEYKRYLEMLLEY-LQDYTDRVKPLQDQN-ELFGKIQAEFEKKWENGTFPGWPK 231
P++ K A ++ + E QD+T R+ Q E + +K+E+G G K
Sbjct: 69 PEDEKKASHQHQEALRREIEAQDHTIRILTCQKTELETALYYSQDAARKFEDGNL-GESK 127
Query: 232 ETSSALTHAGAHLD-----LSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLF 286
+ + L H+ LSA S+W + A ++ L AL L+ L
Sbjct: 128 DLAGRLHHSWHFAGELQRALSAVSTWHKKADRYIEELTKERDALSLE----LYRNTITNE 183
Query: 287 STKGKSLESLDTSLFAKNPKS------KGTKRDTERNKDIA------FLEAQIYEYVEIL 334
K K+ E + A++ KS K KR ER K + L+ +++ E L
Sbjct: 184 ELKKKNAELQEKLRLAESEKSEIQLNVKELKRKLERAKFLLPQVQTNTLQEEMWRQEEEL 243
Query: 335 GEQR---HLTHENVQRKQARTGEE----REEEEEEQISESESEDEENEIIYNPKNL 383
EQ E + R++ R E+ RE+EE+ + E ++E E+ K L
Sbjct: 244 REQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMRRQEKRLREQEKELREQEKEL 299
Score = 31.6 bits (70), Expect = 1.8
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 291 KSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQR--K 348
K + + + + K + +R ER K + E + E E + EQ E ++ +
Sbjct: 540 KKTQEQEKKTWDQEEKMREEERMREREKKMREEEEMMREQEEKMQEQEEKMREQEEKMWE 599
Query: 349 QARTGEEREE---EEEEQISESESEDEENE 375
Q +E+EE E+EE++ E E ED+ E
Sbjct: 600 QEEKMQEQEEKMWEQEEKMWEQEEEDKMQE 629
Score = 30.0 bits (66), Expect = 5.1
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 315 ERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEEN 374
E+ + + E +++E E + EQ E ++ Q + + RE+EE+ Q E + ++E
Sbjct: 636 EQEEKMQEQEEKMWEQEEKMREQEEKMREQEEKMQGQEEKMREQEEKMQGQEEKMREQEE 695
Query: 375 EI 376
++
Sbjct: 696 KM 697
>gi|156071452 nardilysin isoform b [Homo sapiens]
Length = 1151
Score = 36.2 bits (82), Expect = 0.071
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 328 YEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEEN 374
Y Y+++ + L ++ + +TG ++EEEE++ E E +D+E+
Sbjct: 113 YRYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDED 159
>gi|156071450 nardilysin isoform a [Homo sapiens]
Length = 1219
Score = 36.2 bits (82), Expect = 0.071
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 328 YEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEEN 374
Y Y+++ + L ++ + +TG ++EEEE++ E E +D+E+
Sbjct: 113 YRYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDED 159
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 36.2 bits (82), Expect = 0.071
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 306 KSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQIS 365
+S+ +R R+ A LE Y + +R E+ + EE EEE+EE+
Sbjct: 1357 ESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEE 1416
Query: 366 ESESEDEENE 375
E E E+EE E
Sbjct: 1417 EEEEEEEEEE 1426
Score = 34.7 bits (78), Expect = 0.21
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 286 FSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENV 345
F G S E + S + P+++ K+ ++ + + +++ + N
Sbjct: 1346 FQESGVS-EEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNS 1404
Query: 346 QRKQARTGEEREEEEEEQISESESEDEENEIIYNP 380
+ ++ EE+EEEEEE+ E E E++EN+ +P
Sbjct: 1405 EEEE----EEKEEEEEEEEEEEEEEEDENDDSKSP 1435
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 36.2 bits (82), Expect = 0.071
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 306 KSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQIS 365
+S+ +R R+ A LE Y + +R E+ + EE EEE+EE+
Sbjct: 1395 ESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEE 1454
Query: 366 ESESEDEENE 375
E E E+EE E
Sbjct: 1455 EEEEEEEEEE 1464
Score = 34.7 bits (78), Expect = 0.21
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 286 FSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENV 345
F G S E + S + P+++ K+ ++ + + +++ + N
Sbjct: 1384 FQESGVS-EEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNS 1442
Query: 346 QRKQARTGEEREEEEEEQISESESEDEENEIIYNP 380
+ ++ EE+EEEEEE+ E E E++EN+ +P
Sbjct: 1443 EEEE----EEKEEEEEEEEEEEEEEEDENDDSKSP 1473
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 35.8 bits (81), Expect = 0.093
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 278 LEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQ 337
++ AQ + TK +++ D + AKN ++K T+ + + E I + E GE+
Sbjct: 56 IDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEK 115
Query: 338 RHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
+ V+ ++ E+ E++ EE+ E+ ED++ +
Sbjct: 116 KEAVAAEVKNEEEDQKEDEEDQNEEK-GEAGKEDKDEK 152
Score = 30.0 bits (66), Expect = 5.1
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 282 AQRLFSTKGKSLE-SLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHL 340
+ R TK +E ++DTS A + + + N++ EA+I E E +
Sbjct: 41 SSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASEKEIVEV 100
Query: 341 THENVQRKQARTGEEREEEEEEQISESESEDEENE 375
EN++ + GE++E E +E E + E+ E
Sbjct: 101 KEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEE 135
>gi|20336244 proprotein convertase subtilisin/kexin type 2 [Homo
sapiens]
Length = 638
Score = 35.8 bits (81), Expect = 0.093
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 375 EIIYNPKNLPLGWDGKPIPYWLYKLH-GLNINYNCEICGNYTYRGPKAFQRHFAEWRHAH 433
E+ Y K + +G I Y LH L NYN E +++ P + R+ +W ++H
Sbjct: 153 ELGYTGKGVTIGIMDDGIDY----LHPDLASNYNAEASYDFSSNDPYPYPRYTDDWFNSH 208
Query: 434 GMRCLGIPNTAHFANV 449
G RC G + A N+
Sbjct: 209 GTRCAGEVSAAANNNI 224
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 35.8 bits (81), Expect = 0.093
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 294 ESLDTSLFAKNPKSK--GTKRDTERNKDIAFLEAQIYEYV------EILGEQRHLTHENV 345
+SL+ L+ K + K G ++ E+ +++ + Q+ E E++ E
Sbjct: 1015 KSLEVVLYYKASQRKLDGLAKEEEKKEEMEEEKKQVKEEAKEQCGDELVAEPADPEEAKS 1074
Query: 346 QRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPL 385
Q E++EEEE+E+ SE E +D ++ + +N PL
Sbjct: 1075 TEDQEENEEDKEEEEKEEDSEEEEDDADSSLESPEENNPL 1114
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 35.4 bits (80), Expect = 0.12
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEE 373
E+ + E + R+ +R EE+E+EEEE+ E E E+EE
Sbjct: 334 EEENKAVEKMPRELSRIEEEKEDEEEEEEEEEEEEEEE 371
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 338 RHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
R + Q++Q + EE EEEEEE+ E E E+EE E
Sbjct: 1116 RAAQQQKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAE 1153
Score = 35.0 bits (79), Expect = 0.16
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEI 376
+Q+ + ++++ EE EEEEEE+ E E+E+EE E+
Sbjct: 1119 QQQKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEEL 1159
Score = 33.9 bits (76), Expect = 0.35
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENE 375
E+ L Q+KQ + ++++EEEEE+ E E E+EE E
Sbjct: 1110 EKYRLFRAAQQQKQQQQQQKQQEEEEEEEEEEEEEEEEEE 1149
Score = 33.5 bits (75), Expect = 0.46
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 346 QRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLP 384
+++Q + ++ EEEEEE+ E E E+EE E + LP
Sbjct: 1122 KQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEELP 1160
>gi|110349797 homer 2 isoform 4 [Homo sapiens]
Length = 299
Score = 35.4 bits (80), Expect = 0.12
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 80 EFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRY 139
+FAE + +K+ + + E S +E RE PS + V TD+E +
Sbjct: 98 KFAEKFQEVKEAAKIAKDKTQEKIETSSNHSQE--SGRETPSSTQASSVNGTDDEK-ASH 154
Query: 140 LDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER-KNAEYKRYLEMLLEYLQDYTD 198
+ +LK N +KL S + +I +E+ KN + KR +E L L++
Sbjct: 155 AGPANTHLKSEN----DKLKIALTQSAANVKNEINREKEKNTQLKRRIEELEAELREKET 210
Query: 199 RVKPLQDQNELFGKIQAEFE 218
+K L+ Q+E+ ++ +E E
Sbjct: 211 ELKDLRKQSEIIPQLMSECE 230
>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
Length = 981
Score = 35.4 bits (80), Expect = 0.12
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNL----PLGWDGKP 391
E +H + E + ++ E+ EEE++ +ESES +EE +P+N L WD
Sbjct: 919 EDQHSSEEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQGDPQNATRQQQLEWDDST 978
Query: 392 IPY 394
+ Y
Sbjct: 979 LSY 981
>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
Length = 971
Score = 35.4 bits (80), Expect = 0.12
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 336 EQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNL----PLGWDGKP 391
E +H + E + ++ E+ EEE++ +ESES +EE +P+N L WD
Sbjct: 909 EDQHSSEEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQGDPQNATRQQQLEWDDST 968
Query: 392 IPY 394
+ Y
Sbjct: 969 LSY 971
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/89 (23%), Positives = 40/89 (44%)
Query: 288 TKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQR 347
T GK D PK T+ + + L+A++ E +++ + + + +
Sbjct: 562 TDGKEELKADVVPVTLAPKKLDGASHTKPGEKLQVLKAKLQEAMKLRRFEERQKRQALFK 621
Query: 348 KQARTGEEREEEEEEQISESESEDEENEI 376
G E EEEEEE++++ ED E ++
Sbjct: 622 LDNEDGFEEEEEEEEEMTDESEEDGEEKV 650
Score = 31.6 bits (70), Expect = 1.8
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 229 WPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKC----GGTLEERAQR 284
W +A AG ++++ +++ + G + LK+ ++ + L G + + ++
Sbjct: 536 WKHANPAAKPRAGQTVNVNVIV--KDMGTDGKEELKADVVPVTLAPKKLDGASHTKPGEK 593
Query: 285 LFSTKGKSLESLDTSLFAKNPKSKGT-KRDTERNKDIAFLEAQIYEYVEILGEQRHLTHE 343
L K K E++ F + K + K D E E + E E+ E E
Sbjct: 594 LQVLKAKLQEAMKLRRFEERQKRQALFKLDNEDG-----FEEEEEEEEEMTDESEEDGEE 648
Query: 344 NVQRKQARTGEEREEE-EEEQISESESEDEENE 375
V++ EE+EEE EEE+ E E E+E N+
Sbjct: 649 KVEK------EEKEEELEEEEEKEEEEEEEGNQ 675
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 35.0 bits (79), Expect = 0.16
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 315 ERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQ 363
+R +D+ FL+ Q+YEY + L +QR+ H Q + R ++R EE Q
Sbjct: 395 QRIEDLNFLDMQLYEYAKDLFQQRY--HHTKQLEHQRDRQKRREERRLQ 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,377,514
Number of Sequences: 37866
Number of extensions: 914404
Number of successful extensions: 11477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 7639
Number of HSP's gapped (non-prelim): 2529
length of query: 501
length of database: 18,247,518
effective HSP length: 106
effective length of query: 395
effective length of database: 14,233,722
effective search space: 5622320190
effective search space used: 5622320190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.