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Search of human proteins with 5803137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803137 RNA binding motif protein 3 [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 332 8e-92
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 192 1e-49
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 113 8e-26
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 105 2e-23
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 105 2e-23
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 103 8e-23
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 93 8e-20
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 93 8e-20
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 92 1e-19
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 92 1e-19
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 91 4e-19
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 89 2e-18
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 88 3e-18
gi|9558733 transformer-2 alpha [Homo sapiens] 88 3e-18
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 87 4e-18
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 87 4e-18
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 87 4e-18
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 87 4e-18
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 87 4e-18
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 87 8e-18
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 87 8e-18
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 84 5e-17
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 84 5e-17
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 84 5e-17
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 83 1e-16
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 80 9e-16
gi|55956788 nucleolin [Homo sapiens] 77 5e-15
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 75 3e-14
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 75 3e-14
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 74 5e-14
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 332 bits (851), Expect = 8e-92
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDS 120
SVAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDS
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDS 120
Query: 121 RPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
RPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN
Sbjct: 121 RPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 192 bits (487), Expect = 1e-49
Identities = 110/171 (64%), Positives = 131/171 (76%), Gaps = 19/171 (11%)
Query: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
M+S+EGKLFVGGL+F+T+EQ+LE FS +G ISEVVVVKDRETQRSRGFGF+TF N + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 61 SVAMRAMNGESLDGRQIRVDHAGKS----ARGTRGG-----GF--GAHGRGRSYSRGGGD 109
AM AMNG+S+DGRQIRVD AGKS +RG RGG GF G GRGR +SRGGGD
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120
Query: 110 QGYGSGRYYDSRPGGYGYGYGRSRD-YNGRNQ-GGY-DRYSGGNYRDNYDN 157
+GYG R ++SR G GYG SRD Y+ R+Q GGY DR SGG+YRD+YD+
Sbjct: 121 RGYGGNR-FESRSG----GYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDS 166
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 113 bits (282), Expect = 8e-26
Identities = 66/137 (48%), Positives = 79/137 (57%), Gaps = 23/137 (16%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN TDE+ALE F +G I EV+++KDRET +SRGF F+TF +P A A R
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 66 AMNGESLDGRQIRVDHAGKSA--------------------RGTRGGGFGAHGRGRSYSR 105
MNG+SLDG+ I+V A K A RGTRGGG G RS SR
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPR---RSPSR 124
Query: 106 GGGDQGYGSGRYYDSRP 122
GG D G +D RP
Sbjct: 125 GGPDDDGGYTADFDLRP 141
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 41 RETQRSRGF----GFITFTNPEHASVA----MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
R+ + RGF G T + H+SV +R + G + R D+ +RG+
Sbjct: 223 RDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDR-DYGDHLSRGSHRE 281
Query: 93 GFGAHGRGRSYSRGGGDQ-GYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNY 151
F ++G R + G G YG G Y+ G Y RD + G DRYS G +
Sbjct: 282 PFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRH 341
Query: 152 R 152
R
Sbjct: 342 R 342
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 105 bits (261), Expect = 2e-23
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A A R
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
MNG+SLDG+ I+V+ A K + RG G RG G G G G R SR G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR-G 126
Query: 124 GYGYGYGRSRDYNGRNQGG 142
G+ G S ++N + G
Sbjct: 127 GHMDDGGYSMNFNMSSSRG 145
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 109 DQGYGSGRY-YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
D G+ S R Y SR G GYGR RDY+ D SGG+YRD+Y++
Sbjct: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRDYS-------DHPSGGSYRDSYES 287
Score = 32.3 bits (72), Expect = 0.17
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 23/75 (30%)
Query: 104 SRGGGDQ-GYGSGRYYDSRPGGYGY-----GYGRSR----------DYNGRNQGGYDRYS 147
SRG GD+ GYG R Y P G Y YG SR Y G ++ YD YS
Sbjct: 257 SRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSR--YDDYS 314
Query: 148 G-----GNYRDNYDN 157
G RD+Y +
Sbjct: 315 SSRDGYGGSRDSYSS 329
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 105 bits (261), Expect = 2e-23
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A A R
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
MNG+SLDG+ I+V+ A K + RG G RG G G G G R SR G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR-G 126
Query: 124 GYGYGYGRSRDYNGRNQGG 142
G+ G S ++N + G
Sbjct: 127 GHMDDGGYSMNFNMSSSRG 145
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 109 DQGYGSGRY-YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
D G+ S R Y SR G GYGR RDY+ D SGG+YRD+Y++
Sbjct: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRDYS-------DHPSGGSYRDSYES 287
Score = 32.3 bits (72), Expect = 0.17
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 23/75 (30%)
Query: 104 SRGGGDQ-GYGSGRYYDSRPGGYGY-----GYGRSR----------DYNGRNQGGYDRYS 147
SRG GD+ GYG R Y P G Y YG SR Y G ++ YD YS
Sbjct: 257 SRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSR--YDDYS 314
Query: 148 G-----GNYRDNYDN 157
G RD+Y +
Sbjct: 315 SSRDGYGGSRDSYSS 329
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 103 bits (256), Expect = 8e-23
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A A R
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
MNG+SLDG+ I+V+ A K + G RG RG GG G G R SR G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSR-G 126
Query: 124 GYGYGYGRSRDYNGRNQGG 142
G+ G S ++N + G
Sbjct: 127 GHMDDGGYSMNFNMSSSRG 145
Score = 36.6 bits (83), Expect = 0.009
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 109 DQGYGSGRY-YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
D G+ S R Y SR GYGR RDY+ D SGG+YRD+Y++
Sbjct: 245 DYGHSSSRDDYPSRGYSDRDGYGRDRDYS-------DHPSGGSYRDSYES 287
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 93.2 bits (230), Expect = 8e-20
Identities = 56/120 (46%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GK F+GGLN T+++ALE F +G I EV ++KD ET +SRGF FITF P A A R
Sbjct: 8 GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
MNG+SLDG+ I+V+ A K + G RG RG GG G G R SR G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREPPSRGG 127
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 93.2 bits (230), Expect = 8e-20
Identities = 56/120 (46%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GK F+GGLN T+++ALE F +G I EV ++KD ET +SRGF FITF P A A R
Sbjct: 8 GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
MNG+SLDG+ I+V+ A K + G RG RG GG G G R SR G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREPPSRGG 127
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 92.4 bits (228), Expect = 1e-19
Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 39/190 (20%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-- 64
KLFVGG+ +T+E L D+F +G I + ++ DR++ + RGFGF+TF + + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 65 --RAMNGESLDGRQI---RVDHAGKSARGTRGGGFG---AHGRGRSYSRG------GGDQ 110
+NG + + R+ + +S+R RGG FG + G G ++ G GG
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSD 232
Query: 111 GYGSGRYYDSRPGGYGYG-----YGRSRDYNG------------RNQ-----GGYDRYSG 148
GYGSGR + GYG G +G S Y G NQ GGYD Y G
Sbjct: 233 GYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGG 292
Query: 149 GNY-RDNYDN 157
GNY NY++
Sbjct: 293 GNYGSGNYND 302
Score = 67.8 bits (164), Expect = 4e-12
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T E++L +++ +G +++ VV++D ++RSRGFGF+TF++ AM A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 80
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGG 107
S+DGR + A G GAH + GG
Sbjct: 81 ARPHSIDGRVVEPKRA---VAREESGKPGAHVTVKKLFVGG 118
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 83 GKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYG--------YGYGRSRD 134
G+ G G G+G G G GGG YG G Y +G YG +S +
Sbjct: 265 GRGGYGGGGPGYGNQGGGY----GGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 320
Query: 135 YNG-RNQGGYDRYSGGNY 151
+ G RN GG Y GGNY
Sbjct: 321 FGGSRNMGG--PYGGGNY 336
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 83 GKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQ-- 140
G + G+ G G G G G G G+QG G G YD+ GG YG G D+ NQ
Sbjct: 253 GGNFGGSPGYGGGRGGYGGG-GPGYGNQGGGYGGGYDNYGGG-NYGSGNYNDFGNYNQQP 310
Query: 141 GGYDRYSGGNY 151
Y GN+
Sbjct: 311 SNYGPMKSGNF 321
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 92.4 bits (228), Expect = 1e-19
Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 39/190 (20%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-- 64
KLFVGG+ +T+E L D+F +G I + ++ DR++ + RGFGF+TF + + +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 65 --RAMNGESLDGRQI---RVDHAGKSARGTRGGGFG---AHGRGRSYSRG------GGDQ 110
+NG + + R+ + +S+R RGG FG + G G ++ G GG
Sbjct: 161 KYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSD 220
Query: 111 GYGSGRYYDSRPGGYGYG-----YGRSRDYNG------------RNQ-----GGYDRYSG 148
GYGSGR + GYG G +G S Y G NQ GGYD Y G
Sbjct: 221 GYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGG 280
Query: 149 GNY-RDNYDN 157
GNY NY++
Sbjct: 281 GNYGSGNYND 290
Score = 67.8 bits (164), Expect = 4e-12
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T E++L +++ +G +++ VV++D ++RSRGFGF+TF++ AM A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 68
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGG 107
S+DGR + A G GAH + GG
Sbjct: 69 ARPHSIDGRVVEPKRA---VAREESGKPGAHVTVKKLFVGG 106
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 83 GKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYG--------YGYGRSRD 134
G+ G G G+G G G GGG YG G Y +G YG +S +
Sbjct: 253 GRGGYGGGGPGYGNQGGGY----GGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 308
Query: 135 YNG-RNQGGYDRYSGGNY 151
+ G RN GG Y GGNY
Sbjct: 309 FGGSRNMGG--PYGGGNY 324
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 83 GKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQ-- 140
G + G+ G G G G G G G+QG G G YD+ GG YG G D+ NQ
Sbjct: 241 GGNFGGSPGYGGGRGGYGGG-GPGYGNQGGGYGGGYDNYGGG-NYGSGNYNDFGNYNQQP 298
Query: 141 GGYDRYSGGNY 151
Y GN+
Sbjct: 299 SNYGPMKSGNF 309
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 90.9 bits (224), Expect = 4e-19
Identities = 57/136 (41%), Positives = 73/136 (53%), Gaps = 23/136 (16%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGLN TDE+AL+ F +G I +V ++KDR+T +SRGF F+TF +P A A R
Sbjct: 9 KLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARD 68
Query: 67 MNGESLDGRQIRVDH----AGKSAR----------------GTRGGGFGAHGRGRSYSRG 106
MNG+ LDG+ I V A KS+R TRGGG R S+G
Sbjct: 69 MNGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGSSPQ---RPPSQG 125
Query: 107 GGDQGYGSGRYYDSRP 122
D G G Y+D P
Sbjct: 126 RPDDGRGYAGYFDLWP 141
Score = 36.2 bits (82), Expect = 0.012
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 78 RVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQG----YGSGRYYDSRPGGYGYGYGR 131
R DH G+ +G A+G GR + G YG G Y+ G +
Sbjct: 903 RSDHYGRGGCYEEYQGRSPNAYGGGRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSG 962
Query: 132 SRDYNGRNQGGYDRYSGGNYRDNY 155
RD + ++ G DRY GG + + Y
Sbjct: 963 GRDSSIKSYGLSDRYGGGGHYEEY 986
Score = 35.0 bits (79), Expect = 0.026
Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 25/111 (22%)
Query: 70 ESLDGRQIRVDHAGKSARGTRGGG--------FGAHGRGRSYSRGGGDQGYGSGRYYDSR 121
E GR + + G+S GG +G GR Y RG GR D+
Sbjct: 592 EEYRGRSLDANSGGRSPNAYSGGHDSSSWSHRYGGGGRYEEY-RGRSLDANSGGRSPDAY 650
Query: 122 PGG---------YGYGYGRSRDYNGR----NQGGY--DRYSGGNYRDNYDN 157
GG YG G GR +Y GR N GG D YSGG+ + N
Sbjct: 651 SGGHDSSGQSNCYGGG-GRYEEYRGRLLDANSGGRSPDAYSGGHDSSSQSN 700
Score = 34.3 bits (77), Expect = 0.045
Identities = 28/88 (31%), Positives = 30/88 (34%), Gaps = 22/88 (25%)
Query: 90 RGGGFGAHGRGRS------------YSRG--------GGDQGYGSGRYYDSRPGGYGYGY 129
RG H RGRS YSRG G YG G Y+ G Y
Sbjct: 865 RGRSHDTHSRGRSPDAHSGDHYTEAYSRGRDSFSNSYGRSDHYGRGGCYEEYQGRSPNAY 924
Query: 130 GRSRDYNGRN--QGGYDRYSGGNYRDNY 155
G R N N G RY GG + Y
Sbjct: 925 GGGRGLNSSNNSHGRSHRYGGGGRYEEY 952
Score = 33.9 bits (76), Expect = 0.058
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 70 ESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYG-YG 128
E GR + + G+S GG + R RGGG G D+ GG+
Sbjct: 780 EEYRGRSLDANSGGRSPNAY-SGGHNSSSRNDP-CRGGGRYEENRGHSLDANSGGHSPNA 837
Query: 129 YGRSRDYNGRNQGGYDRYSGGNYRDNY 155
Y RD + + RY GG + + Y
Sbjct: 838 YSGGRDSSSNSYDRSHRYGGGGHYEEY 864
Score = 33.9 bits (76), Expect = 0.058
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 90 RGGGFGAHGRGR--SYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYS 147
RG AH GR S G YG G +Y+ G Y D + + G DRYS
Sbjct: 953 RGPSPDAHSGGRDSSIKSYGLSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYS 1012
Query: 148 GGNYR 152
G R
Sbjct: 1013 RGRDR 1017
Score = 32.0 bits (71), Expect = 0.22
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 80 DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYG---YGRSRDYN 136
DH+ K+ G R + R Y G + Y GR D+ GG YG+S Y
Sbjct: 360 DHSPKAYSGGRSSSSNGYSRSDRYGEEGCYEEY-RGRSPDAHSGGRNSSSNSYGQSHHYG 418
Query: 137 GRNQGGYDRY--------SGGNYRD 153
G +G Y+ Y SGG D
Sbjct: 419 G--EGRYEEYRGRSHEARSGGRSTD 441
Score = 28.9 bits (63), Expect = 1.9
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 69 GESLD----GRQIRVDHAGKSARGT------RGGGFGAHG-RGRSY---SRGGGDQGYGS 114
G SLD GR G S+ R GG G + RGRS+ S G Y
Sbjct: 515 GHSLDANSGGRSPDTHSGGHSSSSNSYGQSHRYGGEGRYEYRGRSHDAHSGGCSADAYSG 574
Query: 115 GRYYDSRPGGYGYGYGRSRDYNGR----NQGGY--DRYSGGN 150
G S+ YG G G +Y GR N GG + YSGG+
Sbjct: 575 GHDSSSQSNRYGGG-GCYEEYRGRSLDANSGGRSPNAYSGGH 615
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 88.6 bits (218), Expect = 2e-18
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-- 64
K+FVGG+ +T+E L D+F +G I + V++DR++ + RGF F+TF + + +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 65 --RAMNGESLDGRQIRVDHAGKSARGTRG-GGFGAHGRGRSYSRGGGDQGYGSGRYYDSR 121
+NG + + ++ +SA RG GG + GR + GGG +G G + R
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGR 246
Query: 122 PGGYGYGYGRSRDYNGRNQGGYDRY--SGGNY 151
GGYG G G SR G GGY+ + GGNY
Sbjct: 247 -GGYGGGGGGSRGSYGGGDGGYNGFGGDGGNY 277
Score = 68.9 bits (167), Expect = 2e-12
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T + +L +HF +G +++ VV++D +T+RSRGFGF+T++ E AM A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 MNGESLDGRQIRVDHA 82
+DGR + A
Sbjct: 96 -RPHKVDGRVVEPKRA 110
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 83 GKSARGTRGGGFGAHG-RGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQG 141
G S+RG GGG +G +G Y GGG GY G + G G Y +Y+G+ Q
Sbjct: 282 GYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQS 341
Query: 142 GYDRYSGGNY 151
Y GG++
Sbjct: 342 NYGPMKGGSF 351
Score = 30.0 bits (66), Expect = 0.84
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 90 RGGGFGAHGRGR----SYSRGGGDQGYGSGRY 117
+GG FG G Y GGG GYGS R+
Sbjct: 347 KGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 378
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 88.2 bits (217), Expect = 3e-18
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
L V GL+ T E+ L + FS +GPI++V +V D++++RSRGF F+ F N + A A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 68 NGESLDGRQIRVDHAGKSARGTRGGG-------FGAHGR----GRSYSRGGGDQGYGSGR 116
NG LDGR+IRVD + T G +G+ R R Y RG D+ Y S
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
Query: 117 YYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYR 152
Y GG G+ + RD R + YS G YR
Sbjct: 240 YRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYR 275
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 87.8 bits (216), Expect = 3e-18
Identities = 63/159 (39%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
L V GL+ T E+ L + FS +GP+S V VV D+ T RSRGF F+ F + + AM
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 68 NGESLDGRQIRVDHAGKS-----------ARGTRGGGFGAHGRGRSYSRGGGDQGYGSGR 116
NG LDGR+IRVD++ R T GG G G G GGG G
Sbjct: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGG----GGGGGGGRRRDS 236
Query: 117 YYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNY 155
YYD GY GY R DY+ R Y R S Y Y
Sbjct: 237 YYDR---GYDRGYDRYEDYDYR----YRRRSPSPYYSRY 268
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 87.4 bits (215), Expect = 4e-18
Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLFVGGL + E L +HFS FG + + ++ D+++ + RGFGF+ F N + A A
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA-AV 157
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGG-GDQGYGSGRYYDSRPGGY 125
+ + G ++ V A GGG G G SRGG G +G G GR + G
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIYSGGG----GGGSRSSRGGRGGRGRGGGRDQNGLSKGG 213
Query: 126 GYGYGRSRDYNGRNQGGYDRYSGGNYRDNY 155
G GY Y G GGY+ Y GG +Y
Sbjct: 214 GGGYNSYGGYGGGGGGGYNAYGGGGGGSSY 243
Score = 75.9 bits (185), Expect = 1e-14
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
+S+ KLF+GGLN T E L HF +FG +++ VVV + +T+RSR FGF+T++N E A
Sbjct: 3 NSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
Query: 62 VAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGG--GDQGYGSGRYYD 119
AM A + ++DG + + A R GAH + + GG GD G +
Sbjct: 63 AAM-AASPHAVDGNTVELKRAVSREDSARP---GAHAKVKKLFVGGLKGDVAEGDLIEHF 118
Query: 120 SRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYD 156
S+ +G + Q G R G Y N+D
Sbjct: 119 SQ-----FGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 87.4 bits (215), Expect = 4e-18
Identities = 59/139 (42%), Positives = 77/139 (55%), Gaps = 12/139 (8%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
Query: 66 AMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGY 125
MNG+SL G+ I+V+ A K + F + GR R + GS R S G
Sbjct: 67 DMNGKSLHGKAIKVEQAKKPS-------FQSGGRRRPPASSRNRSPSGSLR---SARGSR 116
Query: 126 GYGYGRSRDYNGR-NQGGY 143
G G + G + GGY
Sbjct: 117 GGTRGWLPSHEGHLDDGGY 135
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 87.4 bits (215), Expect = 4e-18
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
Query: 66 AMNGESLDGRQIRVDHAGK---SARGTRGGGFGAHGRGRSYS----RG--GGDQGYGSGR 116
MNG+SL G+ I+V+ A K + G R + R S S RG GG +G+ +
Sbjct: 67 DMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQ 126
Query: 117 YYDSRPGGY 125
GGY
Sbjct: 127 EGHLDDGGY 135
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 87.4 bits (215), Expect = 4e-18
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
Query: 66 AMNGESLDGRQIRVDHAGK---SARGTRGGGFGAHGRGRSYS----RG--GGDQGYGSGR 116
MNG+SL G+ I+V+ A K + G R + R S S RG GG +G+ +
Sbjct: 67 DMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQ 126
Query: 117 YYDSRPGGY 125
GGY
Sbjct: 127 EGHLDDGGY 135
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 87.4 bits (215), Expect = 4e-18
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
Query: 66 AMNGESLDGRQIRVDHAGK---SARGTRGGGFGAHGRGRSYS----RG--GGDQGYGSGR 116
MNG+SL G+ I+V+ A K + G R + R S S RG GG +G+ +
Sbjct: 67 DMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQ 126
Query: 117 YYDSRPGGY 125
GGY
Sbjct: 127 EGHLDDGGY 135
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 86.7 bits (213), Expect = 8e-18
Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
Query: 66 AMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGY 125
MNG SL G+ I+V+ A K + F + GR R + GS R S G
Sbjct: 67 DMNGTSLHGKAIKVEQAKKPS-------FQSGGRRRPPASSRNRSPSGSLR---SARGSS 116
Query: 126 GYGYGRSRDYNGR-NQGGY 143
G G + G + GGY
Sbjct: 117 GGTRGWLPSHEGHLDDGGY 135
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 86.7 bits (213), Expect = 8e-18
Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
Query: 66 AMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGY 125
MNG SL G+ I+V+ A K + F + GR R + GS R S G
Sbjct: 67 DMNGTSLHGKAIKVEQAKKPS-------FQSGGRRRPPASSRNRSPSGSLR---SARGSS 116
Query: 126 GYGYGRSRDYNGR-NQGGY 143
G G + G + GGY
Sbjct: 117 GGTRGWLPSHEGHLDDGGY 135
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 84.0 bits (206), Expect = 5e-17
Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 24/169 (14%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV---- 62
K+FVGG+ +T+E L D+F +G I + ++ DR + + RGF F+TF +H SV
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF--DDHDSVDKIV 163
Query: 63 --AMRAMNGESLDGRQI----RVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGR 116
+NG + + R+ + A S RG G G GRG + GG+ +G G
Sbjct: 164 IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF---GGNDNFGRGG 220
Query: 117 YYDSRPGGY-----GYGYGRSRD-YNGRNQGGYDRYSGGNYRD--NYDN 157
+ R GG+ G GYG S D YNG G + GG+Y D NY+N
Sbjct: 221 NFSGR-GGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
Score = 70.5 bits (171), Expect = 6e-13
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T +++L HF +G +++ VV++D T+RSRGFGF+T+ E AM A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
+DGR + A R G
Sbjct: 75 -RPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 84.0 bits (206), Expect = 5e-17
Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 24/169 (14%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV---- 62
K+FVGG+ +T+E L D+F +G I + ++ DR + + RGF F+TF +H SV
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF--DDHDSVDKIV 163
Query: 63 --AMRAMNGESLDGRQI----RVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGR 116
+ G + + R+ + A S RG RG G GRG + GG+ +G G
Sbjct: 164 IQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGF---GGNDNFGRGG 220
Query: 117 YYDSRPGGY-----GYGYGRSRD-YNGRNQGGYDRYSGGNYRD--NYDN 157
+ R GG+ G GYG S D YNG G + GG+Y D NY+N
Sbjct: 221 NFSGR-GGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T +++L HF +G +++ VV++D T+RSRGFGF+T+ E AM
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
+DGR + A R G
Sbjct: 75 -TPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 84.0 bits (206), Expect = 5e-17
Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 24/169 (14%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV---- 62
K+FVGG+ +T+E L D+F +G I + ++ DR + + RGF F+TF +H SV
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF--DDHDSVDKIV 163
Query: 63 --AMRAMNGESLDGRQI----RVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGR 116
+ G + + R+ + A S RG RG G GRG + GG+ +G G
Sbjct: 164 IQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGF---GGNDNFGRGG 220
Query: 117 YYDSRPGGY-----GYGYGRSRD-YNGRNQGGYDRYSGGNYRD--NYDN 157
+ R GG+ G GYG S D YNG G + GG+Y D NY+N
Sbjct: 221 NFSGR-GGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T +++L HF +G +++ VV++D T+RSRGFGF+T+ E AM
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
+DGR + A R G
Sbjct: 75 -TPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 82.8 bits (203), Expect = 1e-16
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
K+FVGGL+ +T E+ ++++F +FG I + + D +T RGF FIT+T+ E + +
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 MNGESLDGR-QIRV-------DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQ-GYGSGRY 117
+ G+ +I+V + +G RG G G R RG G G Y
Sbjct: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
Query: 118 YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNY 151
YD G Y YG ++Y+G GGYD Y+G NY
Sbjct: 354 YDQGYGNYNSAYGGDQNYSG--YGGYD-YTGYNY 384
Score = 54.3 bits (129), Expect = 4e-08
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
++GK+F+GGL+++T ++ L ++ S FG + + + D T RSRGFGF+ F +
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 64 MRAMNGESLDGRQI 77
+ + LDG+ I
Sbjct: 206 LE-LKEHKLDGKLI 218
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 79.7 bits (195), Expect = 9e-16
Identities = 66/190 (34%), Positives = 91/190 (47%), Gaps = 42/190 (22%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV---- 62
K+FVGG+ +T+E L D+F +G I + ++ DR + + RGF F+TF +H SV
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD--DHDSVDKIV 163
Query: 63 --AMRAMNGESLDGRQI----RVDHAGKSARGT---------RGGGFGAH---GRGRSYS 104
+NG + + R+ + A S RG RGGGFG + GRG ++S
Sbjct: 164 IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFS 223
Query: 105 --------RGGGDQGYGSGRYY-----DSRPGGYGYGY-GRSRDYNGRNQGGYDR---YS 147
RGGG G GSG Y D GG G GY G SR Y QG ++ Y
Sbjct: 224 GRGGFGGSRGGGGYG-GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYG 282
Query: 148 GGNYRDNYDN 157
G D+Y+N
Sbjct: 283 GSGSYDSYNN 292
Score = 70.5 bits (171), Expect = 6e-13
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
KLF+GGL+F T +++L HF +G +++ VV++D T+RSRGFGF+T+ E AM A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
+DGR + A R G
Sbjct: 75 -RPHKVDGRVVEPKRAVSREDSQRPG 99
Score = 35.8 bits (81), Expect = 0.015
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 82 AGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQG 141
+G G +G G+G G SY+ GGG G+G G S GG G Y +YN ++
Sbjct: 269 SGGQGYGNQGSGYGGSGSYDSYNNGGGG-GFGGGS--GSNFGG-GGSYNDFGNYNNQS-S 323
Query: 142 GYDRYSGGNY 151
+ GGN+
Sbjct: 324 NFGPMKGGNF 333
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 77.4 bits (189), Expect = 5e-15
Identities = 56/144 (38%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
LFV GL+ +T E+ L++ SF +V DRET S+GFGF+ F + E A A AM
Sbjct: 574 LFVKGLSEDTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 68 NGESLDGRQIRVDHA---GKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGG 124
+DG ++ +D A G+ G RGGG G G GR RGG G GR GG
Sbjct: 631 EDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG-GRGGGRGGRGGFGGRGR------GG 683
Query: 125 YGYGYGRSRDYNGRNQGGYDRYSG 148
+G GR GR GG + G
Sbjct: 684 FG---GRGGFRGGRGGGGDHKPQG 704
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
S E L + L+++ E+ L++ F + + V + +S+G+ FI F + E A
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAK 537
Query: 62 VAMRAMNGESLDGRQIRVDHAG 83
A+ + N ++GR IR++ G
Sbjct: 538 EALNSCNKREIEGRAIRLELQG 559
Score = 34.7 bits (78), Expect = 0.034
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
LFVG LNFN L+ S +++ VV D +R FG++ F + E A+ +
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLEKALE-L 366
Query: 68 NGESLDGRQIRVDH-AGKSARGTR 90
G + G +I+++ GK ++ R
Sbjct: 367 TGLKVFGNEIKLEKPKGKDSKKER 390
Score = 28.5 bits (62), Expect = 2.5
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
L L + + L++ F I +V KD +S+G +I F A
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDG---KSKGIAYIEFKTEADAEKTFEEK 449
Query: 68 NGESLDGRQIRVDHAGKSARGT--RGG 92
G +DGR I + + G+ + RGG
Sbjct: 450 QGTEIDGRSISLYYTGEKGQNQDYRGG 476
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 74.7 bits (182), Expect = 3e-14
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-R 65
K+FVGGL+ +T E+ + ++F FG + + + D +T + RGF FITF E M +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 66 AMNGESLDGRQIRV-----DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG--RYY 118
+ L +I+V + + G+R GGF RGR GG Q + G Y+
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-GGFAGRARGRG---GGPSQNWNQGYSNYW 298
Query: 119 DSRPGGYGY---GYGRSRDYNGRNQGGYDRYSG-GNY 151
+ G YGY GYG Y G + GY+ Y G G+Y
Sbjct: 299 NQGYGNYGYNSQGYG---GYGGYDYTGYNNYYGYGDY 332
Score = 59.3 bits (142), Expect = 1e-09
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
EE K+F+GGL+++T ++ L+D+FS FG + + + D T RSRGFGF+ F E
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 M----RAMNGESLDGRQIR 78
M +NG+ +D ++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAK 173
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 74.7 bits (182), Expect = 3e-14
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-R 65
K+FVGGL+ +T E+ + ++F FG + + + D +T + RGF FITF E M +
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
Query: 66 AMNGESLDGRQIRV-----DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG--RYY 118
+ L +I+V + + G+R GGF RGR GG Q + G Y+
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-GGFAGRARGRG---GGPSQNWNQGYSNYW 279
Query: 119 DSRPGGYGY---GYGRSRDYNGRNQGGYDRYSG-GNY 151
+ G YGY GYG Y G + GY+ Y G G+Y
Sbjct: 280 NQGYGNYGYNSQGYG---GYGGYDYTGYNNYYGYGDY 313
Score = 61.2 bits (147), Expect = 3e-10
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
+EGK+F+GGL+++T ++ L+D+FS FG + + + D T RSRGFGF+ F E
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 64 M----RAMNGESLDGRQIR 78
M +NG+ +D ++ +
Sbjct: 136 MDQKEHKLNGKVIDPKRAK 154
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 73.9 bits (180), Expect = 5e-14
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR- 65
K+FVGGLN E+ + ++F FG I + + D + + RGF FITF E +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 66 --------------AMNGESLDGRQIRVDHAGKSARGTR--GGGFGAHGRGRSYSRGGGD 109
A E +Q G RG R GGG G G+ +S+++G G+
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGN 274
Query: 110 ---------QGYGSG-RYYDSRPGGYGYGYGRSRDYN-GRNQGGYDRYSGGNYRDNY 155
QGYG G YD P GY YGYG DY+ G G + GG +++NY
Sbjct: 275 YWNQGYGYQQGYGPGYGGYDYSPYGY-YGYGPGYDYSQGSTNYGKSQRRGG-HQNNY 329
Score = 57.8 bits (138), Expect = 4e-09
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
+ GK+FVGGL+++T ++ L+D+F+ FG + + + D T RSRGFGFI F +
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 64 MRAMNGESLDGRQI 77
+ LDGR I
Sbjct: 128 L-DQKEHRLDGRVI 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,672,872
Number of Sequences: 37866
Number of extensions: 344579
Number of successful extensions: 3774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 1508
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.