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Search of human proteins with 5803036
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 637 0.0
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 327 1e-89
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 310 8e-85
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 310 8e-85
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 306 2e-83
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 301 4e-82
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 297 9e-81
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 297 9e-81
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 271 5e-73
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 271 5e-73
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 270 2e-72
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 171 7e-43
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 171 1e-42
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 168 5e-42
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 168 5e-42
gi|20373175 musashi 2 isoform a [Homo sapiens] 155 5e-38
gi|25121993 musashi 2 isoform b [Homo sapiens] 151 8e-37
gi|4505255 musashi 1 [Homo sapiens] 148 5e-36
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 148 5e-36
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 137 2e-32
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 137 2e-32
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 136 2e-32
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 136 2e-32
gi|195972866 keratin 10 [Homo sapiens] 104 9e-23
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 102 6e-22
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 102 6e-22
gi|55956899 keratin 9 [Homo sapiens] 101 7e-22
gi|109452587 family with sequence similarity 98, member B isofor... 99 5e-21
gi|109255251 loricrin [Homo sapiens] 98 8e-21
gi|55956788 nucleolin [Homo sapiens] 97 2e-20
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 637 bits (1643), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 61 ADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQ 120
ADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQ
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQ 120
Query: 121 FGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY 180
FGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY
Sbjct: 121 FGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY 180
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG
Sbjct: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
Query: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY
Sbjct: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
Query: 301 GGSSF 305
GGSSF
Sbjct: 301 GGSSF 305
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 327 bits (837), Expect = 1e-89
Identities = 182/351 (51%), Positives = 219/351 (62%), Gaps = 58/351 (16%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +PQTKRSR FGFVTYS VEE
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM A PH VDG VE KRAVSREDS +PGAH VKK+FVGG+K D E +L ++F ++
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G +E E++ D+QSGKKRGF FV F +HD DK V K+H I GH EVKKA+ K+++ S
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 182 GG-------------------GGGGSRSSRGG----RGGRGRGGGRDQ------------ 206
G GGGG RGG RGG G GGG +
Sbjct: 210 AGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG 269
Query: 207 ---NGLSKGGGGGYNSYGGYGGGGGGGYN---AYGGGGG------GSSYGGSDYGNG--F 252
+G + GGG GY+S GGYGGGG G N YGGGGG G ++GG +YG G +
Sbjct: 270 FGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNY 329
Query: 253 GGFGSYS-QHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
FG+YS Q QS+YGPMK G S+GGRS+ PY GGYG GGG GG
Sbjct: 330 NDFGNYSGQQQSNYGPMK--------GGSFGGRSSGSPYGGGYGSGGGSGG 372
Score = 100 bits (250), Expect = 1e-21
Identities = 86/289 (29%), Positives = 117/289 (40%), Gaps = 72/289 (24%)
Query: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 145
E+ P +++KLF+GGL + + L EHF ++GT+ ++ D Q+ + RGFGFV
Sbjct: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
Query: 146 FQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSS------ 191
+ + D A + H + G VE K+AV +ED G GG +
Sbjct: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 192 ----------------RGGRGGRGRGGG----RDQNGLSKGGGGGYNSYGGYG------- 224
+ G+ RG D + + K Y++ G+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 225 ------------GGGGGGYN------AYGGGGG----GSSYGG-SDYGNGFGGF-GSYSQ 260
G GGG N +GGGGG G ++GG YG G GG GSY
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Query: 261 HQSSYGPMKSGGGGGGGG---SSWGGRSNSGP----YRGGYGGGGGYGG 302
Y GG GGG SS GG GP GGYGGGGGY G
Sbjct: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDG 311
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 310 bits (795), Expect = 8e-85
Identities = 171/339 (50%), Positives = 214/339 (63%), Gaps = 39/339 (11%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E Q KLFIGGL+ +T+E LR ++E +G LTDCVV+ +P +KRSR FGFVT+S++ E
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAMAA PH++DG VE KRAV+RE+S +PGAH VKKLFVGG+K D E L ++F ++
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY- 180
G ++ EII D+QSGKKRGFGFV F +HD DK + K+H I GH EV+KA+ ++++
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Query: 181 -----SGGGGG-GSRSSRGGRGGRGRG------GGRDQNGLSKGGGGGYNSYGGYGGGG- 227
SG GG G SRGG G G G GG D G +G G GYN YGG GGG
Sbjct: 196 VQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 255
Query: 228 -------GGGYNAYGGGGGG------------SSYGGSDYGNG-FGGFGSYSQHQSSYGP 267
GGG YGGGG G +YGG +YG+G + FG+Y+Q S+YGP
Sbjct: 256 FGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGP 315
Query: 268 MKSG--GGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSS 304
MKSG GG G +GG N GP GG GG GGYGG S
Sbjct: 316 MKSGNFGGSRNMGGPYGG-GNYGP--GGSGGSGGYGGRS 351
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 310 bits (795), Expect = 8e-85
Identities = 171/339 (50%), Positives = 214/339 (63%), Gaps = 39/339 (11%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E Q KLFIGGL+ +T+E LR ++E +G LTDCVV+ +P +KRSR FGFVT+S++ E
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAMAA PH++DG VE KRAV+RE+S +PGAH VKKLFVGG+K D E L ++F ++
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY- 180
G ++ EII D+QSGKKRGFGFV F +HD DK + K+H I GH EV+KA+ ++++
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 183
Query: 181 -----SGGGGG-GSRSSRGGRGGRGRG------GGRDQNGLSKGGGGGYNSYGGYGGGG- 227
SG GG G SRGG G G G GG D G +G G GYN YGG GGG
Sbjct: 184 VQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 243
Query: 228 -------GGGYNAYGGGGGG------------SSYGGSDYGNG-FGGFGSYSQHQSSYGP 267
GGG YGGGG G +YGG +YG+G + FG+Y+Q S+YGP
Sbjct: 244 FGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGP 303
Query: 268 MKSG--GGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSS 304
MKSG GG G +GG N GP GG GG GGYGG S
Sbjct: 304 MKSGNFGGSRNMGGPYGG-GNYGP--GGSGGSGGYGGRS 339
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 306 bits (783), Expect = 2e-83
Identities = 179/358 (50%), Positives = 214/358 (59%), Gaps = 60/358 (16%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM A PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H + GH EV+KA+ K+++ S
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 182 GG----GGGGSRSSRGGRGGR-------GRGG---GRDQNGLSKGGGG------GYNSYG 221
G GS + GGRGG GRGG GR G S+GGGG GYN +G
Sbjct: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFG 248
Query: 222 GYGGGGGGGYNAYGGGGGGSSYGGSDYGN---GFGGFGSYSQHQSSYGPMKSGGGGGGGG 278
GG GGGG Y GG G GG YGN G+GG GSY + + G GG GGG G
Sbjct: 249 NDGGYGGGG-PGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGG----GGFGGGSG 303
Query: 279 SSWGG-------------RSNSGPYRGG---------YGGG----------GGYGGSS 304
S++GG SN GP +GG YGGG GGYGGSS
Sbjct: 304 SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSS 361
Score = 92.8 bits (229), Expect = 3e-19
Identities = 77/273 (28%), Positives = 111/273 (40%), Gaps = 68/273 (24%)
Query: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
S P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198
+ D A + H + G VE K+AV +ED G GG + R
Sbjct: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223
RG G+ D + + K Y++ G+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Query: 224 -----------GGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG 272
G G G + GGG G +GG+D FG G++S + +G + GG
Sbjct: 184 QEMASASSSQRGRSGSGNF----GGGRGGGFGGND---NFGRGGNFS-GRGGFGGSRGGG 235
Query: 273 GGGGGGSSWGGRSNSGPYRGGYGGGG-GYGGSS 304
G GG G + G N GGYGGGG GY G S
Sbjct: 236 GYGGSGDGYNGFGND----GGYGGGGPGYSGGS 264
Score = 79.7 bits (195), Expect = 3e-15
Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 38/273 (13%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+F+GG+ T E LR +FE +G + ++ + + + R F FVT+ + + D +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQFGTV 124
H V+G+ E+++A+S+++ A + + + F GG G D +F + G
Sbjct: 166 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND---NFGRGGNF 222
Query: 125 EKAEIIADKQSGKK---RGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
+ G G G+ F N +G+ + S
Sbjct: 223 SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG---SGGQGYGNQGS 279
Query: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGY------------------ 223
G GG GS S GG G GGG +G + GGGG YN +G Y
Sbjct: 280 GYGGSGSYDSYNNGGGGGFGGG---SGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGR 336
Query: 224 -----GGGGGGGYNAYGGGGGGSSYGGSDYGNG 251
GGGG GG G S S YG+G
Sbjct: 337 SSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSG 369
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 301 bits (772), Expect = 4e-82
Identities = 159/306 (51%), Positives = 197/306 (64%), Gaps = 8/306 (2%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM A PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H + GH EV+KA+ K+++ S
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYNAYGGGGGG 240
RS G GG GRGGG N + G GG ++ GG+GG GGGGY G G G
Sbjct: 189 ASSSQRGRSGSGNFGG-GRGGGFGGND-NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Query: 241 SSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGG 298
GS++G G + FG+Y+ S++GPMK G GG +GG G Y G
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQYFAKPRNQG 303
Query: 299 GYGGSS 304
GYGGSS
Sbjct: 304 GYGGSS 309
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 297 bits (760), Expect = 9e-81
Identities = 157/307 (51%), Positives = 197/307 (64%), Gaps = 10/307 (3%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM +PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H ++GH EV+KA+PK+++ S
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
Query: 182 GGGGG-GSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYNAYGGGGG 239
G R S GGRG G G + N G GG ++ GG+GG GGGGY G G
Sbjct: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNF---GRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
Query: 240 GSSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297
G GS++G G + FG+Y+ S++GPMK G GG +GG G Y
Sbjct: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQYFAKPQNQ 302
Query: 298 GGYGGSS 304
GGYG SS
Sbjct: 303 GGYGVSS 309
Score = 80.5 bits (197), Expect = 2e-15
Identities = 71/264 (26%), Positives = 103/264 (39%), Gaps = 58/264 (21%)
Query: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
SA P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198
+ D A H + G VE K+AV +ED G GG + R
Sbjct: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223
RG G+ D + + K Y++ G+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Query: 224 -----GGGGGGGYNAYGGGGG--GSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGG 276
G G GG G +GG+D FG G++S + +G GGG GG
Sbjct: 184 QEMASASSSQRGRRGSGNFGGGRGDGFGGND---NFGRGGNFS-GRGGFGGSCGGGGYGG 239
Query: 277 GGSSWGGRSNSGPYRGGYGGGGGY 300
G + G N G +GGGG Y
Sbjct: 240 SGDGYNGFGNDG---SNFGGGGSY 260
Score = 33.1 bits (74), Expect = 0.31
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 259 SQHQSSYGPMKSGGGGGGGGSSWGGRSN---SGPYRGGYGGGGGYGGSSF 305
S S G SG GGG G +GG N G + G G GG GG +
Sbjct: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGY 237
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 297 bits (760), Expect = 9e-81
Identities = 157/307 (51%), Positives = 197/307 (64%), Gaps = 10/307 (3%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM +PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H ++GH EV+KA+PK+++ S
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
Query: 182 GGGGG-GSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYNAYGGGGG 239
G R S GGRG G G + N G GG ++ GG+GG GGGGY G G
Sbjct: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNF---GRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
Query: 240 GSSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297
G GS++G G + FG+Y+ S++GPMK G GG +GG G Y
Sbjct: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQYFAKPQNQ 302
Query: 298 GGYGGSS 304
GGYG SS
Sbjct: 303 GGYGVSS 309
Score = 80.5 bits (197), Expect = 2e-15
Identities = 71/264 (26%), Positives = 103/264 (39%), Gaps = 58/264 (21%)
Query: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
SA P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198
+ D A H + G VE K+AV +ED G GG + R
Sbjct: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223
RG G+ D + + K Y++ G+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Query: 224 -----GGGGGGGYNAYGGGGG--GSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGG 276
G G GG G +GG+D FG G++S + +G GGG GG
Sbjct: 184 QEMASASSSQRGRRGSGNFGGGRGDGFGGND---NFGRGGNFS-GRGGFGGSCGGGGYGG 239
Query: 277 GGSSWGGRSNSGPYRGGYGGGGGY 300
G + G N G +GGGG Y
Sbjct: 240 SGDGYNGFGNDG---SNFGGGGSY 260
Score = 33.1 bits (74), Expect = 0.31
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 259 SQHQSSYGPMKSGGGGGGGGSSWGGRSN---SGPYRGGYGGGGGYGGSSF 305
S S G SG GGG G +GG N G + G G GG GG +
Sbjct: 188 SASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGY 237
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 271 bits (693), Expect = 5e-73
Identities = 148/304 (48%), Positives = 186/304 (61%), Gaps = 9/304 (2%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL +TS+ LR H E +GTLT+CVV+ +P T RSR FGFV Y VEE
Sbjct: 9 EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM A PH + G VE K AVSREDS RPGA+ VKK+FVGG+K D E L +++ Q+
Sbjct: 69 DAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G E EI+ D+ SGKKR F FV F NHD+ DK + K+H + GH EV+KA+ K+ + S
Sbjct: 129 GKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMAS 188
Query: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG-GGGG 240
SRS G GG GRGGG N + G GG ++ GG+GG GG + Y G G G
Sbjct: 189 APSSQRSRSGSGNFGG-GRGGGFSGND-NFGHGGNFSGCGGFGGSHGGSADGYNGFGNDG 246
Query: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
++GG G+ + FG+ + S++GPMK G GG +GG G Y GGY
Sbjct: 247 KNFGG---GSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG---GGQYFAKPQNQGGY 300
Query: 301 GGSS 304
GGSS
Sbjct: 301 GGSS 304
Score = 62.0 bits (149), Expect = 6e-10
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
S P +++KLF+GGL+ + ++ L H Q+GT+ + ++ D + + RGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
+ D A + H + G VE K AV +ED
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSRED 94
Score = 60.8 bits (146), Expect = 1e-09
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+F+GG+ T E LR ++E +G ++ + + + R F FVT+ N + D +
Sbjct: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQF--- 121
H V+G+ E+++A+S++ A + + + F GG G + D H F
Sbjct: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGC 225
Query: 122 --------GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
G+ + + GK G G Y + ++++ F P++G K++
Sbjct: 226 GGFGGSHGGSADGYNGFGN--DGKNFGGGSSYNDFGNCNNQSS--NFGPMKGGNFGGKRS 281
Query: 174 VPKEDIYSGGG------------GGGSRSSRGGRGGRGRGGGR 204
+Y GGG GG S SS G G R + G +
Sbjct: 282 C----LYGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 271 bits (693), Expect = 5e-73
Identities = 148/304 (48%), Positives = 186/304 (61%), Gaps = 9/304 (2%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL +TS+ LR H E +GTLT+CVV+ +P T RSR FGFV Y VEE
Sbjct: 9 EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM A PH + G VE K AVSREDS RPGA+ VKK+FVGG+K D E L +++ Q+
Sbjct: 69 DAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G E EI+ D+ SGKKR F FV F NHD+ DK + K+H + GH EV+KA+ K+ + S
Sbjct: 129 GKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMAS 188
Query: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG-GGGG 240
SRS G GG GRGGG N + G GG ++ GG+GG GG + Y G G G
Sbjct: 189 APSSQRSRSGSGNFGG-GRGGGFSGND-NFGHGGNFSGCGGFGGSHGGSADGYNGFGNDG 246
Query: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
++GG G+ + FG+ + S++GPMK G GG +GG G Y GGY
Sbjct: 247 KNFGG---GSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG---GGQYFAKPQNQGGY 300
Query: 301 GGSS 304
GGSS
Sbjct: 301 GGSS 304
Score = 62.0 bits (149), Expect = 6e-10
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
S P +++KLF+GGL+ + ++ L H Q+GT+ + ++ D + + RGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
+ D A + H + G VE K AV +ED
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSRED 94
Score = 60.8 bits (146), Expect = 1e-09
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+F+GG+ T E LR ++E +G ++ + + + R F FVT+ N + D +
Sbjct: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQF--- 121
H V+G+ E+++A+S++ A + + + F GG G + D H F
Sbjct: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGC 225
Query: 122 --------GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
G+ + + GK G G Y + ++++ F P++G K++
Sbjct: 226 GGFGGSHGGSADGYNGFGN--DGKNFGGGSSYNDFGNCNNQSS--NFGPMKGGNFGGKRS 281
Query: 174 VPKEDIYSGGG------------GGGSRSSRGGRGGRGRGGGR 204
+Y GGG GG S SS G G R + G +
Sbjct: 282 C----LYGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 270 bits (689), Expect = 2e-72
Identities = 148/304 (48%), Positives = 185/304 (60%), Gaps = 9/304 (2%)
Query: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
E QL KLFIGGL +TS+ LR H E +GTLT+CVV+ +P T RSR FGFV Y VEE
Sbjct: 9 EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV 68
Query: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
DAAM A PH + G VE K AVSREDS RPGA+ VKK+FVGG+K D E L +++ Q+
Sbjct: 69 DAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128
Query: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
G E EI+ D+ SGKKR F FV F NHD+ DK + K+H + GH EV+KA+ K+ + S
Sbjct: 129 GKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMAS 188
Query: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG-GGGG 240
SRS G GG GRGGG N + G GG ++ GG GG GG + Y G G G
Sbjct: 189 APSSQRSRSGSGNFGG-GRGGGFSGND-NFGHGGNFSGCGGLGGSHGGSADGYNGFGNDG 246
Query: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
++GG G+ + FG+ + S++GPMK G GG +GG G Y GGY
Sbjct: 247 KNFGG---GSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG---GGQYFAKPQNQGGY 300
Query: 301 GGSS 304
GGSS
Sbjct: 301 GGSS 304
Score = 62.0 bits (149), Expect = 6e-10
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
S P +++KLF+GGL+ + ++ L H Q+GT+ + ++ D + + RGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
+ D A + H + G VE K AV +ED
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSRED 94
Score = 60.8 bits (146), Expect = 1e-09
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+F+GG+ T E LR ++E +G ++ + + + R F FVT+ N + D +
Sbjct: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQF--- 121
H V+G+ E+++A+S++ A + + + F GG G + D H F
Sbjct: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGC 225
Query: 122 --------GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
G+ + + GK G G Y + ++++ F P++G K++
Sbjct: 226 GGLGGSHGGSADGYNGFGN--DGKNFGGGSSYNDFGNCNNQSS--NFGPMKGGNFGGKRS 281
Query: 174 VPKEDIYSGGG------------GGGSRSSRGGRGGRGRGGGR 204
+Y GGG GG S SS G G R + G +
Sbjct: 282 C----LYGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 171 bits (433), Expect = 7e-43
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 12/266 (4%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+F+GGL+ TS+ L+ +F FG + DC + ++P T RSR FGF+ + + + +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H +DG ++ K+A++ + VKK+FVGGL + E + E+F +FG +E
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
E+ D + K+RGF F+ F+ + K KFH + G + E+K A PKE G G
Sbjct: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSG 243
Query: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSD 247
R +R RG RG GGG G S+ GY +Y G G GY GG S YG
Sbjct: 244 GRGNR-NRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG 302
Query: 248 YGNGFGGFGSYSQHQSSYGPMKSGGG 273
YG G+ YSQ ++YG + GG
Sbjct: 303 YGPGY----DYSQGSTNYGKSQRRGG 324
Score = 52.0 bits (123), Expect = 7e-07
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
M+ + K+F+GGLN + +E +R +F FG + + ++P+ + R F F+T+ E
Sbjct: 148 MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP 207
Query: 61 ADAAMAASPHAVDGNTVELKRAVSRE 86
+ H V G+ E+K A +E
Sbjct: 208 VKKVLEKKFHTVSGSKCEIKVAQPKE 233
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 171 bits (432), Expect = 1e-42
Identities = 103/279 (36%), Positives = 147/279 (52%), Gaps = 29/279 (10%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ TS+ L + FG + DC + +P T RSR FGFV + + D +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H +DG ++ KRA + + P KK+FVGGL D +E + E+F FG +E
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY------S 181
E+ D ++ ++RGF F+ + + + K ++H I + E+K A PKE +Y
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE-VYRQQQQQQ 321
Query: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG----- 236
GG G + RGG GRGRG G++ N G+N+Y Y G G +AYGG
Sbjct: 322 KGGRGAAAGGRGGTRGRGRGQGQNWN-------QGFNNY--YDQGYGNYNSAYGGDQNYS 372
Query: 237 GGGGSSYGGSDYGN-GFG-GFGSYSQHQSSYGPMKSGGG 273
G GG Y G +YGN G+G G+ YS QS+YG GGG
Sbjct: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGG 411
Score = 65.9 bits (159), Expect = 4e-11
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 56 SNVEEADAAMAAS------PHAVDGNTVELKRAVSREDSARPGAHAKVKK-------LFV 102
S+++ + AA AA+ P A T+E S + G+ K +F+
Sbjct: 93 SSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFI 152
Query: 103 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 162
GGL D ++ DL E+ S+FG V I D +G+ RGFGFV F++ + DK +K H
Sbjct: 153 GGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHK 212
Query: 163 IQGHRVEVKKA------VPKEDIYSGG 183
+ G ++ K+A P + ++ GG
Sbjct: 213 LDGKLIDPKRAKALKGKEPPKKVFVGG 239
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 168 bits (426), Expect = 5e-42
Identities = 102/266 (38%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE Y G
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ-YQQQQQWG 270
Query: 188 SRSSRGGRGGRGRGGGRDQN---GLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYG 244
SR GR RGRGGG QN G S GY +Y GY G GGY Y G + YG
Sbjct: 271 SRGGFAGR-ARGRGGGPSQNWNQGYSNYWNQGYGNY-GYNSQGYGGYGGYDYTGYNNYYG 328
Query: 245 GSDYGNGFGGFGSYSQ---HQSSYGP 267
DY N G+G S+ HQ+SY P
Sbjct: 329 YGDYSNQQSGYGKVSRRGGHQNSYKP 354
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 168 bits (426), Expect = 5e-42
Identities = 102/266 (38%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 139 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 192
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE Y G
Sbjct: 193 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ-YQQQQQWG 251
Query: 188 SRSSRGGRGGRGRGGGRDQN---GLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYG 244
SR GR RGRGGG QN G S GY +Y GY G GGY Y G + YG
Sbjct: 252 SRGGFAGR-ARGRGGGPSQNWNQGYSNYWNQGYGNY-GYNSQGYGGYGGYDYTGYNNYYG 309
Query: 245 GSDYGNGFGGFGSYSQ---HQSSYGP 267
DY N G+G S+ HQ+SY P
Sbjct: 310 YGDYSNQQSGYGKVSRRGGHQNSYKP 335
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 155 bits (391), Expect = 5e-38
Identities = 103/296 (34%), Positives = 144/296 (48%), Gaps = 39/296 (13%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ QTS LR +F FG + +C+V+ +P TKRSR FGFVT+++ D +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H +D T++ K A R A+P + KK+FVGGL + D+ ++F QFG VE A
Sbjct: 82 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
++ DK + + RGFGFV F+N D +K + FH I VE KKA PKE ++
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP------ 193
Query: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGG-GYNSYGGYGGGGGGGYNAYGGGGGGSSYGGS 246
G GR RG + G G GY ++ G G G+
Sbjct: 194 -----PGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGF-------------AP 235
Query: 247 DYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYR-GGYGGGGGYG 301
YG F GF + ++YGP+ + G S S P R GG+ G G
Sbjct: 236 SYGYQFPGFPA-----AAYGPVAAAAVAAARG------SGSNPARPGGFPGANSPG 280
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 151 bits (381), Expect = 8e-37
Identities = 89/228 (39%), Positives = 122/228 (53%), Gaps = 11/228 (4%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ QTS LR +F FG + +C+V+ +P TKRSR FGFVT+++ D +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H +D T++ K A R A+P + KK+FVGGL + D+ ++F QFG VE A
Sbjct: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
++ DK + + RGFGFV F+N D +K + FH I VE KKA PKE ++ G G
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
Query: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYG 235
+ RG D L G G N YG G G +YG
Sbjct: 196 A---------RGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYG 234
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 148 bits (374), Expect = 5e-36
Identities = 77/181 (42%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
Query: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
CK+FIGGL+ QT++ GLR +F FG + +C+V+ +P TKRSR FGFVT+ + D +A
Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
Query: 67 ASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEK 126
S H +D T++ K A R A+P + KK+FVGGL + D+ ++F QFG V+
Sbjct: 80 QSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 127 AEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGG 186
A ++ DK + + RGFGFV F++ D +K + FH I VE KKA PKE + G
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR 197
Query: 187 G 187
G
Sbjct: 198 G 198
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 148 bits (374), Expect = 5e-36
Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 15/223 (6%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+F+GGL+ TS+ L+ +F FG + DC + ++P T RSR FGF+ + + + +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H +DG ++ K+A++ + VKK+FVGGL + E + E+F +FG +E
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY------S 181
E+ D + K+RGF F+ F+ + K KFH + G + E+K A PKE +Y S
Sbjct: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE-VYQQQQYGS 242
Query: 182 GGGGGGSRSSRGGRGGRGRGG-GRDQNGLSKGGGGGYNSYGGY 223
GG G +R +RG GG G GG G G S+ GG N+Y Y
Sbjct: 243 GGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
Score = 52.0 bits (123), Expect = 7e-07
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
M+ + K+F+GGLN + +E +R +F FG + + ++P+ + R F F+T+ E
Sbjct: 148 MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP 207
Query: 61 ADAAMAASPHAVDGNTVELKRAVSRE 86
+ H V G+ E+K A +E
Sbjct: 208 VKKVLEKKFHTVSGSKCEIKVAQPKE 233
Score = 29.3 bits (64), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 272 GGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF 305
G GG G + G R + GG GGGGG G +++
Sbjct: 241 GSGGRGNRNRGNRGS-----GGGGGGGGQGSTNY 269
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 137 bits (344), Expect = 2e-32
Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 49/306 (16%)
Query: 1 MENS---QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 57
M NS ++ KLF+GGL+ T++ LR +F +G + DCV++ + T +SR FGFV + +
Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Query: 58 VEEADAAMAASPHAVDGNTVELKRAVSR---EDSARP---------GAHAKVKKLFVGGL 105
+A+ PH +DG ++ K R + RP ++K K+FVGG+
Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
Query: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQG 165
+ E +L E+F +FG V + +I D + + RGFGF+ F++ + D+A + FH I G
Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
Query: 166 HRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGG--------GY 217
+VEVK+A P++ S+S G+ G + G R + G G GY
Sbjct: 181 KKVEVKRAEPRD----------SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGY 230
Query: 218 NSYGGY--GGGGGGGYNAYGGGGGG-------SSY------GGSDYGNGF-GGFGSYSQH 261
G + G GGY G G +SY GG GF G+G+ Q
Sbjct: 231 GPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
Query: 262 QSSYGP 267
YGP
Sbjct: 291 SFGYGP 296
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 137 bits (344), Expect = 2e-32
Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 49/306 (16%)
Query: 1 MENS---QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 57
M NS ++ KLF+GGL+ T++ LR +F +G + DCV++ + T +SR FGFV + +
Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Query: 58 VEEADAAMAASPHAVDGNTVELKRAVSR---EDSARP---------GAHAKVKKLFVGGL 105
+A+ PH +DG ++ K R + RP ++K K+FVGG+
Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
Query: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQG 165
+ E +L E+F +FG V + +I D + + RGFGF+ F++ + D+A + FH I G
Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
Query: 166 HRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGG--------GY 217
+VEVK+A P++ S+S G+ G + G R + G G GY
Sbjct: 181 KKVEVKRAEPRD----------SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGY 230
Query: 218 NSYGGY--GGGGGGGYNAYGGGGGG-------SSY------GGSDYGNGF-GGFGSYSQH 261
G + G GGY G G +SY GG GF G+G+ Q
Sbjct: 231 GPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
Query: 262 QSSYGP 267
YGP
Sbjct: 291 SFGYGP 296
Score = 29.6 bits (65), Expect = 3.5
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 231 YNAYGGGGGGSSYGGSDYGNGFG-GFGSYSQHQSSYG-PMKSGGGGGGGGSSWGGRSNSG 288
Y Y G G S GFG GF SQ SYG P G GG G S GR +
Sbjct: 346 YGQYAGYGQDLS--------GFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNH 397
Query: 289 PYRG 292
+G
Sbjct: 398 NVQG 401
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 136 bits (343), Expect = 2e-32
Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE G
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG- 270
Query: 188 SRSSRGGRGGRGRG-GGRDQNGLSKGG--GGGYNSYGGY 223
SRGG GR RG GG Q+G K GG NSY Y
Sbjct: 271 ---SRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY 306
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 136 bits (343), Expect = 2e-32
Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 139 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 192
Query: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE G
Sbjct: 193 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG- 251
Query: 188 SRSSRGGRGGRGRG-GGRDQNGLSKGG--GGGYNSYGGY 223
SRGG GR RG GG Q+G K GG NSY Y
Sbjct: 252 ---SRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY 287
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 104 bits (260), Expect = 9e-23
Identities = 63/122 (51%), Positives = 69/122 (56%), Gaps = 15/122 (12%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
SGGGG G S GG GG GGG G GGG G +S GGYGGG GG ++ GG GGG
Sbjct: 459 SGGGGRGGGSFGGGYGGGSSGGGSSGGG--HGGGHGGSSGGGYGGGSSGGGSSGGGYGGG 516
Query: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
SS GG G+ GG+G G GGGGG GG S GG S+SG GGYGGG
Sbjct: 517 SSSGGHG-GSSSGGYG---------GGSSGGGGGGYGGGSSGGGSSSG---GGYGGGSSS 563
Query: 301 GG 302
GG
Sbjct: 564 GG 565
Score = 89.0 bits (219), Expect = 5e-18
Identities = 55/124 (44%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGS- 241
GGGGG S R GGG G S G +S GG GG GGY GG GGGS
Sbjct: 26 GGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSF 85
Query: 242 --SYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG-G 298
SYG S +G +GG S+G GGG GGGS GG G + GG+GGG G
Sbjct: 86 RGSYGSSSFGGSYGG---------SFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFG 136
Query: 299 GYGG 302
G GG
Sbjct: 137 GDGG 140
Score = 88.2 bits (217), Expect = 8e-18
Identities = 49/106 (46%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 181 SGGG--GGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGG 238
SGGG GGG GG G G GGG G S GG GG +S GG+GG GGY GG
Sbjct: 478 SGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGG 537
Query: 239 GGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGR 284
GG YGG G G G Y SS G S G G SS G R
Sbjct: 538 GGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKGPR 583
Score = 85.9 bits (211), Expect = 4e-17
Identities = 59/115 (51%), Positives = 61/115 (53%), Gaps = 28/115 (24%)
Query: 193 GGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGF 252
G GG GRGGG S GGG YGG GGG +GGG GGSS GG YG G
Sbjct: 457 GSSGGGGRGGG------SFGGG-----YGGGSSGGGSSGGGHGGGHGGSSGGG--YGGGS 503
Query: 253 GGFGSYSQHQSSYGPMKSGGGGGGGGSSWG-GRSNSGPYRGGY--GGGGGYGGSS 304
G GS SGGG GGG SS G G S+SG Y GG GGGGGYGG S
Sbjct: 504 SGGGS------------SGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGS 546
Score = 81.6 bits (200), Expect = 8e-16
Identities = 56/127 (44%), Positives = 64/127 (50%), Gaps = 21/127 (16%)
Query: 182 GGGGGGSR----SSRGGRGGRGRGGGRDQNGLSKGGGGGY---NSYGGYGGGGGGGYNAY 234
GGGGG S SS+G GG GG S+G GG S GGYGG GG G ++
Sbjct: 26 GGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSF 85
Query: 235 GGGGGGSSYGGSDYGNGFGG--FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRG 292
G G SS+GGS YG FGG FG S S+G GGGG GGG + G
Sbjct: 86 RGSYGSSSFGGS-YGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGG-----------FGG 133
Query: 293 GYGGGGG 299
G+GG GG
Sbjct: 134 GFGGDGG 140
Score = 70.9 bits (172), Expect = 1e-12
Identities = 50/119 (42%), Positives = 57/119 (47%), Gaps = 30/119 (25%)
Query: 210 SKGGGGGYNSYGGYGGGG--------------GGGYNAYG--------GGGGGSSYGGSD 247
S GGGGG GG GGGG GGG+++ G G GG +GGS
Sbjct: 16 SGGGGGG----GGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSS 71
Query: 248 YG-NGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF 305
G G GGFG S + SYG S GG GGS GG G + GG GGGG+GG F
Sbjct: 72 GGYGGLGGFGGGS-FRGSYG--SSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGF 127
Score = 65.1 bits (157), Expect = 7e-11
Identities = 37/91 (40%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSY------GGYGGGGGGGYNAY 234
S GGG G SS GG G G GGG G GGY GGYGGG GG ++
Sbjct: 494 SSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSS 553
Query: 235 GGGGGGSSYGGSDYGNGFGGFGSYSQHQSSY 265
GGG GG S G + G G S Y
Sbjct: 554 GGGYGGGSSSGGHKSSSSGSVGESSSKGPRY 584
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/80 (48%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 181 SGGGG--GGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGG--YGGGGGGGYNAYGG 236
S GGG GGS GG GG G G R G S GG S+GG +GGG GG + GG
Sbjct: 61 SSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGG 120
Query: 237 GGGGSSYGGSDYGNGFGGFG 256
G GG +GG +G GFGG G
Sbjct: 121 GFGGGGFGGG-FGGGFGGDG 139
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/72 (47%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 238 GGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG-GRSNSGPYRGGYGG 296
G GSS GG G FGG YG SGGG GGG G G S+ G Y GG G
Sbjct: 455 GEGSSGGGGRGGGSFGG---------GYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSG 505
Query: 297 ----GGGYGGSS 304
GGGYGG S
Sbjct: 506 GGSSGGGYGGGS 517
Score = 48.5 bits (114), Expect = 7e-06
Identities = 36/76 (47%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGG--GRDQNGLSKGGG---GGYNSYGGYGGGGGGGYNAY 234
Y G GG G S RG G GG G G S GGG GG GG+GGGG GG +
Sbjct: 74 YGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGG--GF 131
Query: 235 GGGGGGSSYGGSDYGN 250
GGG GG GG GN
Sbjct: 132 GGGFGGD--GGLLSGN 145
Score = 42.0 bits (97), Expect = 7e-04
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 255 FGSYSQHQSSYGPMKSGGGGGG---GGSSWGGRSNSGPYRGGYGG--GGGYGGSS 304
+ S + + S G GGG G GG S GG S+ G + GG+GG GGGYGG S
Sbjct: 449 YRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGS 503
Score = 41.6 bits (96), Expect = 9e-04
Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG--GGGGYNAYGGG 237
Y GG GG GG G GGG GGG +S GGYGGG GG ++ G
Sbjct: 530 YGGGSSGG--------GGGGYGGG--------SSGGGSSSGGGYGGGSSSGGHKSSSSGS 573
Query: 238 GGGSSYGGSDY 248
G SS G Y
Sbjct: 574 VGESSSKGPRY 584
Score = 37.4 bits (85), Expect = 0.017
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 258 YSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGS 303
YS +S G G GGGGG SS S+ G GG+ GG GGS
Sbjct: 11 YSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGS 56
Score = 37.0 bits (84), Expect = 0.022
Identities = 29/80 (36%), Positives = 31/80 (38%), Gaps = 31/80 (38%)
Query: 257 SYSQHQSSYGPMKSGGGGG-------------------GGGSSWGGRSNS---------- 287
S S+H SS GGGGG GGG S GG S
Sbjct: 6 SSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGG 65
Query: 288 --GPYRGGYGGGGGYGGSSF 305
G GGYGG GG+GG SF
Sbjct: 66 CFGGSSGGYGGLGGFGGGSF 85
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 102 bits (253), Expect = 6e-22
Identities = 61/125 (48%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
SGGG GG RSS GG G GGG G GGG G + GGYGG GGGY GGG G
Sbjct: 420 SGGGYGGDRSSGGGYSGDRSGGG--YGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYG 477
Query: 241 SSYG--GSDYGNGFGG-FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297
G G D G G+GG G Y + YG + G GG GG +GG + G Y G GGG
Sbjct: 478 GDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGG--YGGDRSRGGYGGDRGGG 535
Query: 298 GGYGG 302
GYGG
Sbjct: 536 SGYGG 540
Score = 98.6 bits (244), Expect = 6e-21
Identities = 93/305 (30%), Positives = 118/305 (38%), Gaps = 88/305 (28%)
Query: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAE--------IIADKQSG 136
R D+ ++ +FV GL V+ + E F Q G ++ + + DK +G
Sbjct: 218 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 277
Query: 137 KKRGFGFVYFQNHDAADKAAVVKFH--PIQGHRVEVKKAVPKEDIYSGGG-GGGSRSSRG 193
K +G V F + +A KAA+ F G+ ++V A + + GGG GGG R G
Sbjct: 278 KPKGEATVSFDDPPSA-KAAIDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGG 336
Query: 194 GRG-----------------------------------------------------GRGR 200
RG GRG
Sbjct: 337 YRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGY 396
Query: 201 GG-----GRDQNGLSKGGGGGYNSYGGYGG--GGGGGYNA------YGGGGGGSSYGGS- 246
GG GR G +GG GG S GGYGG GGGY+ YGG G YGG
Sbjct: 397 GGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR 456
Query: 247 ------DYGNGFGGF--GSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG- 297
D G G+GG G Y + YG + GG GG G G R G RGGYGG
Sbjct: 457 GGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDR 516
Query: 298 GGYGG 302
GGYGG
Sbjct: 517 GGYGG 521
Score = 95.1 bits (235), Expect = 7e-20
Identities = 66/132 (50%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGG--GGGY-NSYGGYGGGGGGGYNAYGGG 237
SGGG GG RS G G RG G G D+ G GG GGGY GGYGG GGGY GG
Sbjct: 439 SGGGYGGDRSGGGYGGDRGGGYGGDRGG-GYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 497
Query: 238 GGG--SSYGG--SDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG-GRSNSGPYRG 292
GG YGG YG GG+G + + YG + GG G GG S G G SG G
Sbjct: 498 YGGDRGGYGGDRGGYGGDRGGYGG-DRSRGGYGGDRGGGSGYGGDRSGGYGGDRSG---G 553
Query: 293 GYGG--GGGYGG 302
GYGG GGGYGG
Sbjct: 554 GYGGDRGGGYGG 565
Score = 91.7 bits (226), Expect = 7e-19
Identities = 61/129 (47%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 183 GGGGGSRSSRGG-RGGRGRGGGRDQNG-----LSKGGGGGYNSYGGYGGGGGGGYNAYGG 236
GG GG R GG R G G GG R G S GG GG S GGYGG GGGY G
Sbjct: 406 GGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRG 465
Query: 237 GGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGG 296
GG G GG YG GG+G YG + G GG GG G R G RGGYGG
Sbjct: 466 GGYGGDRGGG-YGGDRGGYGG--DRGGGYGGDRGGYGGDRGGYG-GDRGGYGGDRGGYGG 521
Query: 297 G---GGYGG 302
GGYGG
Sbjct: 522 DRSRGGYGG 530
Score = 87.4 bits (215), Expect = 1e-17
Identities = 60/132 (45%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 184 GGGGSRS-SRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GGG S S GG GG GGG G +GGG G + GGYGG GGGY GG GG
Sbjct: 431 GGGYSGDRSGGGYGGDRSGGG---YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDR 487
Query: 243 YGGSDYGNGFGGF----GSYSQHQSSYGPMKSGGG-----GGGGGSSWGGRSNSGPYRGG 293
GG YG GG+ G Y + YG + G G GG GG GG G GG
Sbjct: 488 GGG--YGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGG 545
Query: 294 YGG---GGGYGG 302
YGG GGGYGG
Sbjct: 546 YGGDRSGGGYGG 557
Score = 80.1 bits (196), Expect = 2e-15
Identities = 57/126 (45%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGG-GRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGG 238
Y G GGG RGG G RGG G D+ G G GG YGG GG GG YGG
Sbjct: 460 YGGDRGGGYGGDRGGGYGGDRGGYGGDRGG---GYGGDRGGYGGDRGGYGGDRGGYGGDR 516
Query: 239 GGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG-GGGGGGSSWGGRSNSGPYRGGYGGG 297
GG YGG GG+G S YG +SGG GG G +GG GGYGG
Sbjct: 517 GG--YGGD---RSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRG-----GGYGGD 566
Query: 298 -GGYGG 302
GGYGG
Sbjct: 567 RGGYGG 572
Score = 77.4 bits (189), Expect = 1e-14
Identities = 53/123 (43%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 180 YSGGGGGGSRSSRGGRGG-RGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGG 238
Y G GGG RGG GG RG G G D+ G GG YGG GG GG YGG
Sbjct: 468 YGGDRGGGYGGDRGGYGGDRGGGYGGDRGGY----GGDRGGYGGDRGGYGGDRGGYGGDR 523
Query: 239 GGSSYGGS-DYGNGFGGFGSYSQHQSSYGPMKSGGG-GGGGGSSWGGRSNSGPYRGGYGG 296
YGG G+G+GG YG +SGGG GG G +GG RGGYGG
Sbjct: 524 SRGGYGGDRGGGSGYGG-----DRSGGYGGDRSGGGYGGDRGGGYGGD------RGGYGG 572
Query: 297 GGG 299
G
Sbjct: 573 KMG 575
Score = 73.2 bits (178), Expect = 3e-13
Identities = 49/111 (44%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 180 YSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGG 237
Y G GGG RGG GG G GG R G +GG GG S GGYGG GGG + YGG
Sbjct: 483 YGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGG-SGYGGD 541
Query: 238 GGGSSYGGSDYGNGFGG--FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSN 286
G YGG G G+GG G Y GG GG G GGR++
Sbjct: 542 RSG-GYGGDRSGGGYGGDRGGGY------------GGDRGGYGGKMGGRND 579
Score = 65.9 bits (159), Expect = 4e-11
Identities = 38/68 (55%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GG GG RS RGG GG RGGG G GG GG S GGYGG GGGY GG GG
Sbjct: 517 GGYGGDRS-RGGYGG-DRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKM 574
Query: 243 YGGSDYGN 250
G +DY N
Sbjct: 575 GGRNDYRN 582
Score = 42.4 bits (98), Expect = 5e-04
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 22/118 (18%)
Query: 196 GGRGRGGGRDQ------NGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYG 249
G G+ GG Q N S+G G SY GYG ++YG G S G Y
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTD---SSYGQNYSGYSSYGQSYS 61
Query: 250 NGFGGF-----GSYSQ----HQSSYGPMKSGGGGGGGGSSWG----GRSNSGPYRGGY 294
+GG+ SYSQ +Q M+S G GG S+ G+ +S + GY
Sbjct: 62 QSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGY 119
Score = 37.0 bits (84), Expect = 0.022
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 145 YFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGR 204
Y QN + H Q R +V + Y G GGG GRGG + G
Sbjct: 139 YSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGR-----GRGGYDKDGRG 193
Query: 205 DQNGLSKGGGGGYNSYGGY 223
G S G GG+ ++GG+
Sbjct: 194 PMTGSSGGDRGGFKNFGGH 212
Score = 33.5 bits (75), Expect = 0.24
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 17/102 (16%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGY--------- 231
S G G S+S G G++ +G S G SYGGY Y
Sbjct: 25 SQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQKQSSYSQQPYNNQG 84
Query: 232 ------NAYGGGGGGSSYGGSDYG--NGFGGFGSYSQHQSSY 265
++ GG SY DYG + + Y QHQ SY
Sbjct: 85 QQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSY 126
Score = 33.5 bits (75), Expect = 0.24
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 191 SRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGG--GGGSSYGG-SD 247
SR G RG GG S+GGG G GGY G G GG GG ++GG D
Sbjct: 165 SRYGEDNRGYGG-------SQGGGRG---RGGYDKDGRGPMTGSSGGDRGGFKNFGGHRD 214
Query: 248 YG 249
YG
Sbjct: 215 YG 216
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 214 GGGYNSYGGYGGG--GGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 267
G YGG GG G GGY+ G G S GG GGF ++ H+ YGP
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDR-----GGFKNFGGHR-DYGP 217
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 228 GGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMK-SGGGGGGGGSSWGGRSN 286
G YGG GG G G GG+ + GPM S GG GG ++GG +
Sbjct: 168 GEDNRGYGGSQGG--------GRGRGGYD-----KDGRGPMTGSSGGDRGGFKNFGGHRD 214
Query: 287 SGP 289
GP
Sbjct: 215 YGP 217
Score = 28.9 bits (63), Expect = 5.9
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 219 SYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSG--GGGGG 276
S G G GG +Y G S G + G+G + SSYG SG G
Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTT--DSSYGQNYSGYSSYGQS 59
Query: 277 GGSSWGGRSN 286
S+GG N
Sbjct: 60 YSQSYGGYEN 69
Score = 28.5 bits (62), Expect = 7.7
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 246 SDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG-GRSNSGPYRGGYGGGGGYGGS 303
SD G+ +G G Q S+YG S G G S G G++ Y Y G YG S
Sbjct: 2 SDSGS-YGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS 59
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 102 bits (253), Expect = 6e-22
Identities = 61/125 (48%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
SGGG GG RSS GG G GGG G GGG G + GGYGG GGGY GGG G
Sbjct: 423 SGGGYGGDRSSGGGYSGDRSGGG--YGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYG 480
Query: 241 SSYG--GSDYGNGFGG-FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297
G G D G G+GG G Y + YG + G GG GG +GG + G Y G GGG
Sbjct: 481 GDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGG--YGGDRSRGGYGGDRGGG 538
Query: 298 GGYGG 302
GYGG
Sbjct: 539 SGYGG 543
Score = 98.6 bits (244), Expect = 6e-21
Identities = 93/305 (30%), Positives = 118/305 (38%), Gaps = 88/305 (28%)
Query: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAE--------IIADKQSG 136
R D+ ++ +FV GL V+ + E F Q G ++ + + DK +G
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280
Query: 137 KKRGFGFVYFQNHDAADKAAVVKFH--PIQGHRVEVKKAVPKEDIYSGGG-GGGSRSSRG 193
K +G V F + +A KAA+ F G+ ++V A + + GGG GGG R G
Sbjct: 281 KPKGEATVSFDDPPSA-KAAIDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGG 339
Query: 194 GRG-----------------------------------------------------GRGR 200
RG GRG
Sbjct: 340 YRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGY 399
Query: 201 GG-----GRDQNGLSKGGGGGYNSYGGYGG--GGGGGYNA------YGGGGGGSSYGGS- 246
GG GR G +GG GG S GGYGG GGGY+ YGG G YGG
Sbjct: 400 GGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR 459
Query: 247 ------DYGNGFGGF--GSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG- 297
D G G+GG G Y + YG + GG GG G G R G RGGYGG
Sbjct: 460 GGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDR 519
Query: 298 GGYGG 302
GGYGG
Sbjct: 520 GGYGG 524
Score = 95.1 bits (235), Expect = 7e-20
Identities = 66/132 (50%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGG--GGGY-NSYGGYGGGGGGGYNAYGGG 237
SGGG GG RS G G RG G G D+ G GG GGGY GGYGG GGGY GG
Sbjct: 442 SGGGYGGDRSGGGYGGDRGGGYGGDRGG-GYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 500
Query: 238 GGG--SSYGG--SDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG-GRSNSGPYRG 292
GG YGG YG GG+G + + YG + GG G GG S G G SG G
Sbjct: 501 YGGDRGGYGGDRGGYGGDRGGYGG-DRSRGGYGGDRGGGSGYGGDRSGGYGGDRSG---G 556
Query: 293 GYGG--GGGYGG 302
GYGG GGGYGG
Sbjct: 557 GYGGDRGGGYGG 568
Score = 91.7 bits (226), Expect = 7e-19
Identities = 61/129 (47%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 183 GGGGGSRSSRGG-RGGRGRGGGRDQNG-----LSKGGGGGYNSYGGYGGGGGGGYNAYGG 236
GG GG R GG R G G GG R G S GG GG S GGYGG GGGY G
Sbjct: 409 GGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRG 468
Query: 237 GGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGG 296
GG G GG YG GG+G YG + G GG GG G R G RGGYGG
Sbjct: 469 GGYGGDRGGG-YGGDRGGYGG--DRGGGYGGDRGGYGGDRGGYG-GDRGGYGGDRGGYGG 524
Query: 297 G---GGYGG 302
GGYGG
Sbjct: 525 DRSRGGYGG 533
Score = 87.4 bits (215), Expect = 1e-17
Identities = 60/132 (45%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 184 GGGGSRS-SRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GGG S S GG GG GGG G +GGG G + GGYGG GGGY GG GG
Sbjct: 434 GGGYSGDRSGGGYGGDRSGGG---YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDR 490
Query: 243 YGGSDYGNGFGGF----GSYSQHQSSYGPMKSGGG-----GGGGGSSWGGRSNSGPYRGG 293
GG YG GG+ G Y + YG + G G GG GG GG G GG
Sbjct: 491 GGG--YGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGG 548
Query: 294 YGG---GGGYGG 302
YGG GGGYGG
Sbjct: 549 YGGDRSGGGYGG 560
Score = 80.1 bits (196), Expect = 2e-15
Identities = 57/126 (45%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGG-GRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGG 238
Y G GGG RGG G RGG G D+ G G GG YGG GG GG YGG
Sbjct: 463 YGGDRGGGYGGDRGGGYGGDRGGYGGDRGG---GYGGDRGGYGGDRGGYGGDRGGYGGDR 519
Query: 239 GGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG-GGGGGGSSWGGRSNSGPYRGGYGGG 297
GG YGG GG+G S YG +SGG GG G +GG GGYGG
Sbjct: 520 GG--YGGD---RSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRG-----GGYGGD 569
Query: 298 -GGYGG 302
GGYGG
Sbjct: 570 RGGYGG 575
Score = 77.4 bits (189), Expect = 1e-14
Identities = 53/123 (43%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 180 YSGGGGGGSRSSRGGRGG-RGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGG 238
Y G GGG RGG GG RG G G D+ G GG YGG GG GG YGG
Sbjct: 471 YGGDRGGGYGGDRGGYGGDRGGGYGGDRGGY----GGDRGGYGGDRGGYGGDRGGYGGDR 526
Query: 239 GGSSYGGS-DYGNGFGGFGSYSQHQSSYGPMKSGGG-GGGGGSSWGGRSNSGPYRGGYGG 296
YGG G+G+GG YG +SGGG GG G +GG RGGYGG
Sbjct: 527 SRGGYGGDRGGGSGYGG-----DRSGGYGGDRSGGGYGGDRGGGYGGD------RGGYGG 575
Query: 297 GGG 299
G
Sbjct: 576 KMG 578
Score = 73.2 bits (178), Expect = 3e-13
Identities = 49/111 (44%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 180 YSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGG 237
Y G GGG RGG GG G GG R G +GG GG S GGYGG GGG + YGG
Sbjct: 486 YGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGG-SGYGGD 544
Query: 238 GGGSSYGGSDYGNGFGG--FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSN 286
G YGG G G+GG G Y GG GG G GGR++
Sbjct: 545 RSG-GYGGDRSGGGYGGDRGGGY------------GGDRGGYGGKMGGRND 582
Score = 65.9 bits (159), Expect = 4e-11
Identities = 38/68 (55%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
GG GG RS RGG GG RGGG G GG GG S GGYGG GGGY GG GG
Sbjct: 520 GGYGGDRS-RGGYGG-DRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKM 577
Query: 243 YGGSDYGN 250
G +DY N
Sbjct: 578 GGRNDYRN 585
Score = 41.6 bits (96), Expect = 9e-04
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 23/120 (19%)
Query: 196 GGRGRGGGRDQ------NGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSD-- 247
G G+ GG Q N S+G G SY GYG Y G SSYG S
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQ--NYSGYSSYGQSQSG 62
Query: 248 YGNGFGGF-----GSYSQ----HQSSYGPMKSGGGGGGGGSSWG----GRSNSGPYRGGY 294
Y +GG+ SYSQ +Q M+S G GG S+ G+ +S + GY
Sbjct: 63 YSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGY 122
Score = 37.0 bits (84), Expect = 0.022
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 145 YFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGR 204
Y QN + H Q R +V + Y G GGG GRGG + G
Sbjct: 142 YSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGR-----GRGGYDKDGRG 196
Query: 205 DQNGLSKGGGGGYNSYGGY 223
G S G GG+ ++GG+
Sbjct: 197 PMTGSSGGDRGGFKNFGGH 215
Score = 33.5 bits (75), Expect = 0.24
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 191 SRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGG--GGGSSYGG-SD 247
SR G RG GG S+GGG G GGY G G GG GG ++GG D
Sbjct: 168 SRYGEDNRGYGG-------SQGGGRG---RGGYDKDGRGPMTGSSGGDRGGFKNFGGHRD 217
Query: 248 YG 249
YG
Sbjct: 218 YG 219
Score = 32.3 bits (72), Expect = 0.54
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 15/68 (22%)
Query: 219 SYGGYGGGGGGGYNAY---------GGGGGGSSYGG------SDYGNGFGGFGSYSQHQS 263
S G G GG +Y G G SY G S YG + G+ SY Q QS
Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQS 61
Query: 264 SYGPMKSG 271
Y G
Sbjct: 62 GYSQSYGG 69
Score = 32.3 bits (72), Expect = 0.54
Identities = 51/206 (24%), Positives = 62/206 (30%), Gaps = 81/206 (39%)
Query: 178 DIYSGGGGGGSRSSRGGRGGRG-RGGGRDQNGLSKGG-------GGGYNSYGGYGGGGGG 229
D S G GG + S G G +G G+ S G G Y+ Y YG G
Sbjct: 3 DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSG 62
Query: 230 GYNAYGG-----------------------------GGGGSSYGGSDYG--------NGF 252
+YGG GG SY DYG +G+
Sbjct: 63 YSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGY 122
Query: 253 ----GGFG----------SYSQHQSSYGPMKSG-----------------GGGGGGGSSW 281
G + SYSQ+Q SY + G GGS
Sbjct: 123 DQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQG 182
Query: 282 GGRSNSGPYRGGYG-----GGGGYGG 302
GGR G + G G GG GG
Sbjct: 183 GGRGRGGYDKDGRGPMTGSSGGDRGG 208
Score = 31.6 bits (70), Expect = 0.91
Identities = 48/218 (22%), Positives = 76/218 (34%), Gaps = 16/218 (7%)
Query: 52 FVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAE 111
+ TY N A+ ++ G T + + + G GG +
Sbjct: 17 YSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQS 76
Query: 112 GDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVK 171
+ ++ G + E + Q G+ + + D+ D+ + H QG E
Sbjct: 77 SYSQQPYNNQGQQQNMES-SGSQGGRAPSYDQPDYGQQDSYDQQSGYDQH--QGSYDEQS 133
Query: 172 KAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG--GGG 229
+ D YS +S R D+ +S+ G YGG GG G G
Sbjct: 134 NYDQQHDSYSQN----QQSYHSQRENYSHHTQDDRRDVSRYGEDN-RGYGGSQGGGRGRG 188
Query: 230 GYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 267
GY+ G G S GG GGF ++ H+ YGP
Sbjct: 189 GYDKDGRGPMTGSSGGDR-----GGFKNFGGHR-DYGP 220
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 228 GGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMK-SGGGGGGGGSSWGGRSN 286
G YGG GG G G GG+ + GPM S GG GG ++GG +
Sbjct: 171 GEDNRGYGGSQGG--------GRGRGGYD-----KDGRGPMTGSSGGDRGGFKNFGGHRD 217
Query: 287 SGP 289
GP
Sbjct: 218 YGP 220
Score = 28.5 bits (62), Expect = 7.7
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 246 SDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG-GRSNSGPYRGGYGGGGGYGGS 303
SD G+ +G G Q S+YG S G G S G G++ Y Y G YG S
Sbjct: 2 SDSGS-YGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS 59
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 101 bits (252), Expect = 7e-22
Identities = 67/142 (47%), Positives = 71/142 (50%), Gaps = 23/142 (16%)
Query: 183 GGGGGS--RSSRGGRGGR----GRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG 236
GG GGS R SRGG GG G GGG S+GG GG SYGG G GGG YGG
Sbjct: 479 GGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGG--SYGGGSGSGGGSGGGYGG 536
Query: 237 GGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGG-----------GGGSSWGGRS 285
G GG GGS G+ G G+Y S G G GGG GGGS +GG S
Sbjct: 537 GSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGES 596
Query: 286 NSGPYRGG---YGGGGGYGGSS 304
G Y GG G GGGYGG S
Sbjct: 597 -GGSYGGGEEASGSGGGYGGGS 617
Score = 98.6 bits (244), Expect = 6e-21
Identities = 57/135 (42%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 176 KEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYG 235
+ED S G G RGG GG G R +G S GGGG YGG G GG +YG
Sbjct: 462 QEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYG 521
Query: 236 GGGGGSSYGGSDYGNGFGG---FGSYSQHQSSYGPMKSGG---GGGGGGSSWGGRSNSGP 289
GG G G YG G GG GS H G GG GGG GG GG + G
Sbjct: 522 GGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGG 581
Query: 290 YRGGYGGGGGYGGSS 304
G +GGG G+GG S
Sbjct: 582 SGGSHGGGSGFGGES 596
Score = 87.0 bits (214), Expect = 2e-17
Identities = 61/133 (45%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 181 SGGGGGGS-------RSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNA 233
SGGGGGG RSS G GGG + S G GGG + G GGGG GY+
Sbjct: 14 SGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSY 73
Query: 234 YGGGGGG---SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPY 290
GG GGG SS GG +G G GFG S S GG GGG G +GG SG
Sbjct: 74 GGGSGGGFSASSLGGG-FGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSG-- 130
Query: 291 RGGYGG-GGGYGG 302
GG+GG GGG GG
Sbjct: 131 FGGFGGFGGGAGG 143
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/123 (46%), Positives = 67/123 (54%), Gaps = 17/123 (13%)
Query: 188 SRSSRGGRGGRGRGGG------RDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGS 241
SRS GG GG G GG R + GGGG ++S GYGGG GGG G
Sbjct: 12 SRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGY 71
Query: 242 SYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGG--GGG 299
SYGG G+G GGF + SS G GG G GG+S GG S+SG + GG+GG GGG
Sbjct: 72 SYGG---GSG-GGFSA-----SSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGG 122
Query: 300 YGG 302
+GG
Sbjct: 123 FGG 125
Score = 82.4 bits (202), Expect = 5e-16
Identities = 61/127 (48%), Positives = 65/127 (51%), Gaps = 26/127 (20%)
Query: 181 SGGGGGGSR-SSRGGRGGR-----GRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAY 234
SGGGGGG R SS G GG GRGGG GG GG S GGG GGG +
Sbjct: 38 SGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGF 97
Query: 235 GG--GGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRG 292
GG GGG SS GG +G GFGG GS GG GGG GS +GG G + G
Sbjct: 98 GGASGGGYSSSGG--FGGGFGG-GS------------GGGFGGGYGSGFGG---FGGFGG 139
Query: 293 GYGGGGG 299
G GGG G
Sbjct: 140 GAGGGDG 146
Score = 81.6 bits (200), Expect = 8e-16
Identities = 54/127 (42%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 181 SGGG-GGGSRSSRGGRGGRGRGGGRDQNGLSKGG--GGGYNSYGGYGGGGGGGYNAYGGG 237
SGG GGGS S G GG G G G +G S GG GG +YGG G GGG YGGG
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGG 575
Query: 238 GGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGG 297
G G +G G SG GG GGS GG SG GGYGGG
Sbjct: 576 SGSRGGSGGSHGGG------------------SGFGGESGGSYGGGEEASGS-GGGYGGG 616
Query: 298 GGYGGSS 304
G S
Sbjct: 617 SGKSSHS 623
Score = 80.9 bits (198), Expect = 1e-15
Identities = 53/125 (42%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGG 239
+S GGGG GGGR + S G GGG + G GGGG GY +YGGG G
Sbjct: 35 FSSSGGGG-------------GGGRFSS--SSGYGGGSSRVCGRGGGGSFGY-SYGGGSG 78
Query: 240 GSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGG 299
G + S G GFGG GS +S G S GG GGG G G Y G+GG GG
Sbjct: 79 G-GFSASSLGGGFGG-GSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGG 136
Query: 300 YGGSS 304
+GG +
Sbjct: 137 FGGGA 141
Score = 65.9 bits (159), Expect = 4e-11
Identities = 43/101 (42%), Positives = 48/101 (47%), Gaps = 21/101 (20%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGG 239
+SGG GGG GG G G G G G G GGG S GG GG GGG + +GG G
Sbjct: 542 HSGGSGGGHSGGSGGNYGGGSGSGGGSGG---GYGGGSGSRGGSGGSHGGG-SGFGGESG 597
Query: 240 GSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSS 280
G SYGG + +G GG G GGG G SS
Sbjct: 598 G-SYGGGEEASGSGG----------------GYGGGSGKSS 621
Score = 63.2 bits (152), Expect = 3e-10
Identities = 41/104 (39%), Positives = 46/104 (44%), Gaps = 22/104 (21%)
Query: 207 NGLSKGGGGGYNSYG------GYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQ 260
+ L +GG + S G G GG GG Y GG G SYGG G G+GG
Sbjct: 455 HNLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGG------ 508
Query: 261 HQSSYGPMKSGGGGGGGGSSWGGRSNS-GPYRGGYGGGGGYGGS 303
G GG G S+GG S S G GGYGGG G G S
Sbjct: 509 ---------GSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHS 543
Score = 56.6 bits (135), Expect = 3e-08
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 25/106 (23%)
Query: 209 LSKGGGGGYNSYGGYGGGGG-----GGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQS 263
LS+ GGGG GG G GG +++ GGGGGG + S +G+GG S
Sbjct: 11 LSRSGGGGG---GGLGSGGSIRSSYSRFSSSGGGGGGGRFSSS---SGYGGGSSR----- 59
Query: 264 SYGPMKSGGGGGGGGSSWGGRSNSG----PYRGGYGGGG-GYGGSS 304
+ GGGG G S+GG S G GG+GGG G+GG+S
Sbjct: 60 ----VCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGAS 101
Score = 39.3 bits (90), Expect = 0.004
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 257 SYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPY--RGGYGGGG------GYGGSS 304
S Q SSY GGGGGG GS RS+ + GG GGGG GYGG S
Sbjct: 2 SCRQFSSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGS 57
Score = 29.3 bits (64), Expect = 4.5
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 181 SGGG-GGGSRSSRGGRGGRGRGGGRDQNGL 209
SGGG GGG S GG GG G G G G+
Sbjct: 119 SGGGFGGGYGSGFGGFGGFGGGAGGGDGGI 148
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 99.0 bits (245), Expect = 5e-21
Identities = 57/110 (51%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 193 GGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGF 252
GGRGG G GGG G +GGGGG GG+GGGGGG +GGGGGG G G G
Sbjct: 333 GGRGGWGGGGG----GGGRGGGGGGGGRGGWGGGGGG----WGGGGGGGGGWGGGGGGGR 384
Query: 253 GGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
GGF Q + YG G GG GG +GGR PY GG GGGGG GG
Sbjct: 385 GGF----QGRGDYG----GRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426
Score = 98.6 bits (244), Expect = 6e-21
Identities = 59/128 (46%), Positives = 63/128 (49%), Gaps = 23/128 (17%)
Query: 175 PKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAY 234
P + GGGG G GG GGRG GGG G GGGGG+ G GGGGGGG+
Sbjct: 324 PWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGW----GGGGGGGGGWGGG 379
Query: 235 GGGGGGSSYGGSDYGN--GFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRG 292
GGGG G G DYG G+GG G Y YG GGGGGGGG
Sbjct: 380 GGGGRGGFQGRGDYGGRGGYGGRGGYGGR--GYGDPYGGGGGGGGGG------------- 424
Query: 293 GYGGGGGY 300
GGGGGY
Sbjct: 425 --GGGGGY 430
Score = 97.4 bits (241), Expect = 1e-20
Identities = 61/119 (51%), Positives = 65/119 (54%), Gaps = 24/119 (20%)
Query: 184 GGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSY 243
GGGG RGG GG G GGGR GGGGG GG+GGGGGG +GGGGGG
Sbjct: 331 GGGG----RGGWGGGGGGGGR-------GGGGGGGGRGGWGGGGGG----WGGGGGGGGG 375
Query: 244 GGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
G G G GGF Q + YG G GG GG +GGR PY GG GGGGG GG
Sbjct: 376 WGGGGGGGRGGF----QGRGDYG----GRGGYGGRGGYGGRGYGDPYGGG-GGGGGGGG 425
Score = 63.5 bits (153), Expect = 2e-10
Identities = 38/96 (39%), Positives = 41/96 (42%), Gaps = 33/96 (34%)
Query: 227 GGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGG-------GS 279
GGGG +GGGGGG GG G G GG+G GGGGG G
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGRGGWG----------------GGGGGWGGGGGGGG 374
Query: 280 SWGGRSNSG----------PYRGGYGGGGGYGGSSF 305
WGG G RGGYGG GGYGG +
Sbjct: 375 GWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGY 410
Score = 56.6 bits (135), Expect = 3e-08
Identities = 34/62 (54%), Positives = 34/62 (54%), Gaps = 14/62 (22%)
Query: 182 GGGGGGSRSS---------RGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYN 232
GGGGGG R RGG GGRG GGR G GGGGG GG GGGGGGGY
Sbjct: 377 GGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGY-GDPYGGGGG----GGGGGGGGGGYR 431
Query: 233 AY 234
Y
Sbjct: 432 RY 433
Score = 42.0 bits (97), Expect = 7e-04
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 258 YSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGY-GGGGGYGG 302
+ + Q G GGGGGGG GG G RGG+ GGGGG+GG
Sbjct: 325 WQKRQEGGGGRGGWGGGGGGGGRGGGGGGGG--RGGWGGGGGGWGG 368
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 267 PMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
P + GGGG WGG G RGG GGGGG GG
Sbjct: 324 PWQKRQEGGGGRGGWGGGGGGGG-RGGGGGGGGRGG 358
Score = 36.6 bits (83), Expect = 0.028
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 269 KSGGGGG-----------GGGSSWGGRSNSGPYRGGYGGGGGYGG 302
+ GGG G GGG GGR G GG+GGGGG GG
Sbjct: 330 EGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGG 374
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 98.2 bits (243), Expect = 8e-21
Identities = 60/136 (44%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 181 SGGGGGGSRSSRGGRG---GRGRGGGRDQNGLSKGGGGGYNSYG----GYGGGGGGGYNA 233
SGGGGGG S GG G G G GGG +G GGGGY+ G GGGGGGG
Sbjct: 20 SGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGG 79
Query: 234 YGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGG-----SSWGGRSNSG 288
GGG GGS G+ GG G +S G SGGGG GG SS GG S+ G
Sbjct: 80 CGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGG 139
Query: 289 PYRGGYGGGGGYGGSS 304
GGGG+ G +
Sbjct: 140 GSGCFSSGGGGFSGQA 155
Score = 96.7 bits (239), Expect = 2e-20
Identities = 57/142 (40%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYG----------------GY 223
YSGGG GG S GG GG G GG + GGGG + G G
Sbjct: 59 YSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGG 118
Query: 224 GGGGGGGYNAYGGGGGGSSYGGSD-YGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG 282
GG GGG + GGGGSS GGS + +G GGF + SYG + SGG GGG +
Sbjct: 119 GGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFS 178
Query: 283 GRSNSGPYRGGYGGGGGYGGSS 304
G G GGG G GG S
Sbjct: 179 SGGGGGSVCGYSGGGSGCGGGS 200
Score = 83.6 bits (205), Expect = 2e-16
Identities = 63/154 (40%), Positives = 69/154 (44%), Gaps = 33/154 (21%)
Query: 181 SGGGG------GGSRSSRGGRGGRGRGGGRDQNGLS---KGGGGGYN-------SYGGYG 224
SGGGG GG SS GG G GGG G S GGGG++ SYGG
Sbjct: 106 SGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVS 165
Query: 225 GGG--GGGYNAYGGGGGGSSY-----------GGSDYGNGFGGFGSYSQHQSSYGPMKSG 271
GG GGG + GGGG S GGS G+G G S Q+S P S
Sbjct: 166 SGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSY 225
Query: 272 GGGGGGGSSWGGRSNSGPYRGGYGGG-GGYGGSS 304
GGG GG GG SG + G GGG G GG S
Sbjct: 226 GGGSSGG---GGSGGSGCFSSGGGGGSSGCGGGS 256
Score = 70.5 bits (171), Expect = 2e-12
Identities = 44/94 (46%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 210 SKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMK 269
+ GGGGG GG GGGG +GGGG G GS G G+ G G YS G
Sbjct: 19 TSGGGGGG------GGSGGGGCGFFGGGGSGGGSSGS--GCGYSGGGGYS--GGGCGGGS 68
Query: 270 SGGGGGGG-GSSWGGRSNSGPYRGGYGGGGGYGG 302
SGGGGGGG G GG S Y GG G GG G
Sbjct: 69 SGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSG 102
Score = 68.6 bits (166), Expect = 7e-12
Identities = 57/129 (44%), Positives = 60/129 (46%), Gaps = 33/129 (25%)
Query: 180 YSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGY--------------NSYGG--Y 223
+S GGGGGS G GG G GGG S G G GY SYGG
Sbjct: 177 FSSGGGGGSVCGYSG-GGSGCGGGS-----SGGSGSGYVSSQQVTQTSCAPQPSYGGGSS 230
Query: 224 GGGGGGGYNAY--GGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG--GGGGGGS 279
GGGG GG + GGGGG S GG G G G S G + GG GGGGGGS
Sbjct: 231 GGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCI------ISGGGSVCGGGSSGGGGGGS 284
Query: 280 SWGGRSNSG 288
S GG S SG
Sbjct: 285 SVGG-SGSG 292
Score = 65.9 bits (159), Expect = 4e-11
Identities = 58/144 (40%), Positives = 61/144 (42%), Gaps = 36/144 (25%)
Query: 179 IYSGGGGGGSR---SSRGGRG---GRGRGGGRDQNGLSKGGGGGY--------------N 218
+ SGG GG SS GG G G GG G S G G GY
Sbjct: 164 VSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQP 223
Query: 219 SYGG--YGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGG-G 275
SYGG GGGG GG + GGGG G S G G G GS G + SGGG
Sbjct: 224 SYGGGSSGGGGSGGSGCFSSGGGG---GSSGCGGGSSGIGS--------GCIISGGGSVC 272
Query: 276 GGGSSWGGRSNSGPYRGGYGGGGG 299
GGGSS GG G GG G G G
Sbjct: 273 GGGSSGGG--GGGSSVGGSGSGKG 294
Score = 55.8 bits (133), Expect = 5e-08
Identities = 45/124 (36%), Positives = 49/124 (39%), Gaps = 34/124 (27%)
Query: 180 YSGGGGGGSRSSRGGRG----------------------GRGRGGGRDQNG-LSKGGGGG 216
YSGGG G S GG G G GGG +G S GGGGG
Sbjct: 189 YSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGG 248
Query: 217 YNSYGGYGGG--------GGG---GYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSY 265
+ GG G GGG G + GGGGGGSS GGS G G Q Q+
Sbjct: 249 SSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICHQTQQKQAPT 308
Query: 266 GPMK 269
P K
Sbjct: 309 WPSK 312
Score = 32.0 bits (71), Expect = 0.70
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 257 SYSQHQSSYGP----MKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSS 304
SY + Q + P +K+ GGGGG GG G G +GGGG GGSS
Sbjct: 2 SYQKKQPTPQPPVDCVKTSGGGGG----GGGSGGGG--CGFFGGGGSGGGSS 47
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 97.1 bits (240), Expect = 2e-20
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 29/235 (12%)
Query: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAM-AA 67
L + L+ +E L+ FE + V Q +S+ + F+ +++ E+A A+ +
Sbjct: 488 LVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 543
Query: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK-LFVGGLKGDVAEGDLIEHFSQFGTVEK 126
+ ++G + L+ R P A ++ K LFV GL D E L E F G+V +
Sbjct: 544 NKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-R 597
Query: 127 AEIIADKQSGKKRGFGFVYFQNHDAADKAA-VVKFHPIQGHRVEVKKAVPKEDIYSGGGG 185
A I+ D+++G +GFGFV F + + A A ++ I G++V + A PK + GG G
Sbjct: 598 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRG 657
Query: 186 GGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
GG RGG GGRG GG GG +GG G GG GG + GG GG
Sbjct: 658 GG----RGGFGGRG------------GGRGGRGGFGGRGRGGFGGRGGFRGGRGG 696
Score = 52.0 bits (123), Expect = 7e-07
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 18/193 (9%)
Query: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
LF+G LN S L+ D + VV+ + +R FG+V + + E+ + A+ +
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKND-LAVVDVRIGMTRKFGYVDFESAEDLEKALELT 367
Query: 69 PHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAE 128
V GN ++L++ ++ A + L L V + +L E F + AE
Sbjct: 368 GLKVFGNEIKLEKPKGKDSKKERDA----RTLLAKNLPYKVTQDELKEVFE-----DAAE 418
Query: 129 IIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGS 188
I + GK +G ++ F+ A+K F QG ++ + +Y G G +
Sbjct: 419 IRLVSKDGKSKGIAYIEFKTEADAEKT----FEEKQGTEIDGRSI----SLYYTGEKGQN 470
Query: 189 RSSRGGRGGRGRG 201
+ RGG+ G
Sbjct: 471 QDYRGGKNSTWSG 483
Score = 37.7 bits (86), Expect = 0.013
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 245 GSDYGNGFGGFGSYSQHQSSYGPMKSGG--------------GGGGGGSSWGGRSNSGPY 290
GS G GF F S +++ M+ G G GG G GGR G
Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 666
Query: 291 RGGYGGGGGYGG 302
GG GG GG+GG
Sbjct: 667 GGGRGGRGGFGG 678
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,026,885
Number of Sequences: 37866
Number of extensions: 882482
Number of successful extensions: 37325
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 380
Number of HSP's that attempted gapping in prelim test: 6785
Number of HSP's gapped (non-prelim): 10471
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.