Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EXOC5 Sequence: fasta or formatted (708aa) NCBI GI: 5730037
Description:

SEC10 protein

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         41           2
 C cysteine            2.5         18           1
 D aspartate           5.5         39           1
 E glutamate           8.6         61           2
 F phenylalanine       5.1         36           1
 G glycine             4.1         29           3
 H histidine           3.0         21           1
 I isoleucine          6.4         45           2
 K lysine              7.8         55           3
 L leucine            10.9         77           2
 M methionine          2.3         16           1
 N asparagine          4.4         31           2
 P proline             2.4         17           1
 Q glutamine           6.9         49           2
 R arginine            5.2         37           2
 S serine              5.8         41           3
 T threonine           4.0         28           2
 V valine              5.9         42           3
 W tryptophan          0.1          1           1
 Y tyrosine            3.4         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SEC10 protein 
GOLGA4                0.019   golgi autoantigen, golgin subfamily a, 4 
ANKRD26               0.014   ankyrin repeat domain 26 
TMEM191C              0.012   PREDICTED: hypothetical protein 
CCDC88A               0.012   coiled-coil domain containing 88A isoform 1 
CDC42BPA              0.012   CDC42-binding protein kinase alpha isoform B 
TMEM191C              0.011   PREDICTED: hypothetical protein 
TMEM191C              0.011   PREDICTED: hypothetical protein 
CEP110                0.011   centrosomal protein 110kDa 
KRT15                 0.011   keratin 15 
CCDC147               0.011   coiled-coil domain containing 147 
CCDC88A               0.010   coiled-coil domain containing 88A isoform 2 
GOLGA1                0.010   golgin 97 
PPFIA2                0.010   PTPRF interacting protein alpha 2 
TMEM191B              0.009   PREDICTED: hypothetical protein isoform 2 
MYH3                  0.009   myosin, heavy chain 3, skeletal muscle, embryonic [H...
TRIP11                0.009   thyroid hormone receptor interactor 11 
MYH8                  0.009   myosin, heavy chain 8, skeletal muscle, perinatal [...
CCDC19                0.009   nasopharyngeal epithelium specific protein 1 
STX7                  0.009   syntaxin 7 
KIF5C                 0.009   kinesin family member 5C 
MYH10                 0.009   myosin, heavy polypeptide 10, non-muscle 
PPFIA1                0.009   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.009   PTPRF interacting protein alpha 1 isoform b 
MYH11                 0.008   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.008   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.008   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.008   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC347475             0.008   hypothetical protein LOC347475 
CCDC136               0.008   coiled-coil domain containing 136 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press