Guide to the Human Genome
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Name: CDC42BPA Sequence: fasta or formatted (1719aa) NCBI GI: 30089962
Description:

CDC42-binding protein kinase alpha isoform B

Referenced in:

Additional Cell Cycle Functions

Other entries for this name:
alt prot [1638aa] CDC42-binding protein kinase alpha isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         96           3
 C cysteine            2.2         37           2
 D aspartate           5.6         96           3
 E glutamate           9.4        162           3
 F phenylalanine       3.3         57           2
 G glycine             4.7         80           2
 H histidine           2.6         44           2
 I isoleucine          5.2         89           2
 K lysine              7.6        130           2
 L leucine             9.8        168           2
 M methionine          2.5         43           1
 N asparagine          4.3         74           2
 P proline             4.2         73           3
 Q glutamine           5.2         89           2
 R arginine            6.0        103           2
 S serine              8.4        144           2
 T threonine           5.0         86           2
 V valine              5.3         91           2
 W tryptophan          0.9         15           2
 Y tyrosine            2.4         42           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDC42-binding protein kinase alpha isoform B 
CDC42BPA              0.865   CDC42-binding protein kinase alpha isoform A 
CDC42BPB              0.610   CDC42-binding protein kinase beta 
CDC42BPG              0.377   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
DMPK                  0.145   myotonic dystrophy protein kinase isoform 4 
DMPK                  0.145   myotonic dystrophy protein kinase isoform 3 
DMPK                  0.144   myotonic dystrophy protein kinase isoform 2 
DMPK                  0.133   myotonic dystrophy protein kinase isoform 1 
ROCK1                 0.132   Rho-associated, coiled-coil containing protein kinase...
ROCK2                 0.129   Rho-associated, coiled-coil containing protein kinas...
CIT                   0.111   citron 
STK38                 0.083   serine/threonine kinase 38 
RPS6KA6               0.055   ribosomal protein S6 kinase polypeptide 6 
RPS6KA2               0.054   ribosomal protein S6 kinase, 90kDa, polypeptide 2 is...
RPS6KA2               0.054   ribosomal protein S6 kinase, 90kDa, polypeptide 2 is...
PRKACA                0.053   cAMP-dependent protein kinase catalytic subunit alpha...
SGK2                  0.053   serum/glucocorticoid regulated kinase 2 isoform alph...
SGK2                  0.053   serum/glucocorticoid regulated kinase 2 isoform beta...
PRKCE                 0.053   protein kinase C, epsilon 
PRKACA                0.053   cAMP-dependent protein kinase catalytic subunit alph...
MAST3                 0.053   microtubule associated serine/threonine kinase 3 [H...
PRKACB                0.053   cAMP-dependent protein kinase catalytic subunit beta ...
SGK1                  0.052   serum/glucocorticoid regulated kinase 1 isoform 1 [H...
SGK1                  0.052   serum/glucocorticoid regulated kinase 1 isoform 4 [...
SGK1                  0.052   serum/glucocorticoid regulated kinase 1 isoform 3 [...
SGK1                  0.052   serum/glucocorticoid regulated kinase 1 isoform 2 [...
PRKACB                0.052   cAMP-dependent protein kinase catalytic subunit beta...
RPS6KA3               0.052   ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho...
RPS6KB1               0.052   ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Ho...
RPS6KA1               0.052   ribosomal protein S6 kinase, 90kDa, polypeptide 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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