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Search of human proteins with 57165366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57165366 G4 protein [Homo sapiens]
(294 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57165366 G4 protein [Homo sapiens] 606 e-174
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 39 0.004
gi|47132519 Ras association and pleckstrin homology domains 1 is... 39 0.005
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 39 0.005
gi|46094014 peptide chain release factor 3 [Homo sapiens] 38 0.009
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 38 0.012
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 37 0.021
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.021
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.021
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 37 0.021
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.021
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.021
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 37 0.027
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 35 0.079
gi|30089954 H326 [Homo sapiens] 35 0.079
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 34 0.13
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 34 0.13
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 33 0.23
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 33 0.30
gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens] 33 0.30
gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens] 33 0.30
gi|83776598 virus-induced signaling adapter [Homo sapiens] 33 0.39
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 32 0.51
gi|42475941 zinc finger protein 261 [Homo sapiens] 32 0.51
gi|4827067 zinc finger protein 261 [Homo sapiens] 32 0.51
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 32 0.51
gi|13375913 transmembrane protein 149 [Homo sapiens] 32 0.51
gi|50345881 cytoplasmic polyadenylation element binding protein ... 32 0.67
gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo ... 32 0.67
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 32 0.67
>gi|57165366 G4 protein [Homo sapiens]
Length = 294
Score = 606 bits (1562), Expect = e-174
Identities = 294/294 (100%), Positives = 294/294 (100%)
Query: 1 MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKD 60
MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKD
Sbjct: 1 MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKD 60
Query: 61 SGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHV 120
SGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHV
Sbjct: 61 SGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHV 120
Query: 121 DSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQIST 180
DSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQIST
Sbjct: 121 DSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQIST 180
Query: 181 NLTLHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAALHGLHAVLSLLT 240
NLTLHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAALHGLHAVLSLLT
Sbjct: 181 NLTLHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAALHGLHAVLSLLT 240
Query: 241 AHPLHFACLFGLLQALVLAVSLREPNGDEAATDWESEGLEREGEEQRGDPGKGL 294
AHPLHFACLFGLLQALVLAVSLREPNGDEAATDWESEGLEREGEEQRGDPGKGL
Sbjct: 241 AHPLHFACLFGLLQALVLAVSLREPNGDEAATDWESEGLEREGEEQRGDPGKGL 294
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 39.3 bits (90), Expect = 0.004
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 38/181 (20%)
Query: 4 RRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGA 63
RRLGG +RP+ P E S + + +++S PE + G P +
Sbjct: 9 RRLGG-----------LRPESP--ESLTSVSRTRRALVEFESNPEETREPGSPPSVQRAG 55
Query: 64 LRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWD-HVDS 122
L G+ P K P GS R+ Q G+ E G ASP+ + D H++S
Sbjct: 56 L---GSPERPPKTSP-----GSPRLQ-----QGAGLESPQGQPEPGAASPQRQQDLHLES 102
Query: 123 GGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGE------PGAPSRYL----GGP 172
R+P SPE P P K + + +L + PGAP L G P
Sbjct: 103 -PQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSP 161
Query: 173 E 173
E
Sbjct: 162 E 162
>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
1 [Homo sapiens]
Length = 1250
Score = 38.9 bits (89), Expect = 0.005
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 22 PDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGH---PKTKDSGALRVSGAASEPSKEEP 78
P PP P P + + SGS +T G P + + +++ S A P + P
Sbjct: 936 PAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAEHPEPKRP 995
Query: 79 QVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSV 138
V+ L SK + P T L A PK ++ G PGV +G +S
Sbjct: 996 SVDSLVSKFTPPAESGSPSKET-----LPPPAAPPKP--GKLNLSGVNLPGVLQQGCVSA 1048
Query: 139 PGP 141
P
Sbjct: 1049 KAP 1051
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.9 bits (89), Expect = 0.005
Identities = 45/146 (30%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 24 PPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVSGAASEPSKEEPQVEQ- 82
P YP PR V +S N G + E ED G P K G + + G +P P+ E
Sbjct: 706 PGYPGPRGVKGTSGNRGLQGEKG-EKGED-GFPGFK--GDVGLKGDQGKPGAPGPRGEDG 761
Query: 83 -LGSKRMDSLKWDQ-PISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVPG 140
G K ++ P S E G+L G G RPG P+G + PG
Sbjct: 762 PEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLP----------GYPGRPG--PKGSIGFPG 809
Query: 141 PGAPLEKPGRREKL-LGWLRGEPGAP 165
P P+ + G+ K L GE G P
Sbjct: 810 PLGPIGEKGKSGKTGQPGLEGERGPP 835
Score = 32.7 bits (73), Expect = 0.39
Identities = 39/142 (27%), Positives = 51/142 (35%), Gaps = 10/142 (7%)
Query: 28 EPRRVDSSSENSGSDWDSAPETMEDVGHPKTK--DSGALRVSGAASEPSKEEPQVEQLGS 85
+P V E G D P + PK + G SGAA P K+ P E
Sbjct: 1197 QPGAVGEKGER-GDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAK 1255
Query: 86 KRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP----GP 141
+ + + G G SP + D D GG PG S E G P GP
Sbjct: 1256 GSVGPTGLPGDLGPPGDPGVSGIDG-SPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGP 1314
Query: 142 GAPLEKPGRREKLLGWLRGEPG 163
+ + GR + +GEPG
Sbjct: 1315 SGHMGREGREGE--KGAKGEPG 1334
>gi|46094014 peptide chain release factor 3 [Homo sapiens]
Length = 628
Score = 38.1 bits (87), Expect = 0.009
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 45 SAPETMEDVGHPKTKDSGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESG 104
S ET G+P+ K G GA EPS+EEP V GS +++ +P+ E+G
Sbjct: 88 SNDETCTGAGYPQGKRMGR----GAPVEPSREEPLVSLEGSNSAVTMELSEPV---VENG 140
Query: 105 RLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGR 150
+E + + W+H PG GG S G P E+ G+
Sbjct: 141 EVE---MALEESWEHSKEVSEAEPG----GGSS--GDSGPPEESGQ 177
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 37.7 bits (86), Expect = 0.012
Identities = 51/197 (25%), Positives = 73/197 (37%), Gaps = 20/197 (10%)
Query: 19 PMRPDPPY--PEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVSGAASEPSKE 76
P P PPY PE S+ G D AP + G L A P
Sbjct: 242 PPLPPPPYYPPEYTCTPSTEAQRGLHLDFAPSPFGTLYDVAINSPGLLY---PAELPPPY 298
Query: 77 EPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVD---SGGTRRPGVSP- 132
E V Q + ++ S+ Q ++ + + G S + D S GT PG SP
Sbjct: 299 EAVVGQPPASQVTSI--GQQVAESSSGDPNTSAGFSTPVPADSTSLLVSEGTATPGSSPS 356
Query: 133 -EGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQISTNLTLHLLELL- 190
+G + P P P PG +PG S+ GP + +++ TL +
Sbjct: 357 PDGPVGAPAPSEPALPPGHVSP------EDPGMGSQVQPGPGRVSRSTSDPTLCTSSMAG 410
Query: 191 -ASALLALCSRPLRAAL 206
AS+ CS+ L A L
Sbjct: 411 DASSHRPSCSQDLEAGL 427
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 37.0 bits (84), Expect = 0.021
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 8 GWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVS 67
G P P G+ + +P SS SD S ET + K SG
Sbjct: 237 GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSD--SEEETPAAKALLQAKASGKTSQV 294
Query: 68 GAASEPSKEEPQ----------------VEQLGSKRMDSLKWDQPISSTQES-GRLEAGG 110
GAAS P+KE P+ Q G + DS + S +E+ + + G
Sbjct: 295 GAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSG 354
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREK 153
+P++R + + R G +P GP A + G++E+
Sbjct: 355 KAPQVRAASAPAKESPRKGAAPAPPRKT-GPAAAQVQVGKQEE 396
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED--VGHPKTKDSGALR--VSGAASEPSKEEPQVEQ 82
P P R ++ E ++A E+ ED V ++ SG + ++ A S+ SK P+++
Sbjct: 1098 PTPSRTETLVE------ETAAESSEDDVVAPSQSLLSGYMTPGLTPANSQASKATPKLDS 1151
Query: 83 LGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP 139
S D P + + AG SPK SG T + P+ G P
Sbjct: 1152 SPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSRKPKKGAGNP 1208
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 37.0 bits (84), Expect = 0.021
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 8 GWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVS 67
G P P G+ + +P SS SD S ET + K SG
Sbjct: 314 GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSD--SEEETPAAKALLQAKASGKTSQV 371
Query: 68 GAASEPSKEEPQ----------------VEQLGSKRMDSLKWDQPISSTQES-GRLEAGG 110
GAAS P+KE P+ Q G + DS + S +E+ + + G
Sbjct: 372 GAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSG 431
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREK 153
+P++R + + R G +P GP A + G++E+
Sbjct: 432 KAPQVRAASAPAKESPRKGAAPAPPRKT-GPAAAQVQVGKQEE 473
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED--VGHPKTKDSGALR--VSGAASEPSKEEPQVEQ 82
P P R ++ E ++A E+ ED V ++ SG + ++ A S+ SK P+++
Sbjct: 1137 PTPSRTETLVE------ETAAESSEDDVVAPSQSLLSGYMTPGLTPANSQASKATPKLDS 1190
Query: 83 LGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP 139
S D P + + AG SPK SG T + P+ G P
Sbjct: 1191 SPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSRKPKKGAGNP 1247
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.021
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 8 GWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVS 67
G P P G+ + +P SS SD S ET + K SG
Sbjct: 314 GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSD--SEEETPAAKALLQAKASGKTSQV 371
Query: 68 GAASEPSKEEPQ----------------VEQLGSKRMDSLKWDQPISSTQES-GRLEAGG 110
GAAS P+KE P+ Q G + DS + S +E+ + + G
Sbjct: 372 GAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSG 431
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREK 153
+P++R + + R G +P GP A + G++E+
Sbjct: 432 KAPQVRAASAPAKESPRKGAAPAPPRKT-GPAAAQVQVGKQEE 473
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED--VGHPKTKDSGALR--VSGAASEPSKEEPQVEQ 82
P P R ++ E ++A E+ ED V ++ SG + ++ A S+ SK P+++
Sbjct: 1174 PTPSRTETLVE------ETAAESSEDDVVAPSQSLLSGYMTPGLTPANSQASKATPKLDS 1227
Query: 83 LGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP 139
S D P + + AG SPK SG T + P+ G P
Sbjct: 1228 SPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSRKPKKGAGNP 1284
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 37.0 bits (84), Expect = 0.021
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 8 GWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVS 67
G P P G+ + +P SS SD S ET + K SG
Sbjct: 237 GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSD--SEEETPAAKALLQAKASGKTSQV 294
Query: 68 GAASEPSKEEPQ----------------VEQLGSKRMDSLKWDQPISSTQES-GRLEAGG 110
GAAS P+KE P+ Q G + DS + S +E+ + + G
Sbjct: 295 GAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSG 354
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREK 153
+P++R + + R G +P GP A + G++E+
Sbjct: 355 KAPQVRAASAPAKESPRKGAAPAPPRKT-GPAAAQVQVGKQEE 396
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED--VGHPKTKDSGALR--VSGAASEPSKEEPQVEQ 82
P P R ++ E ++A E+ ED V ++ SG + ++ A S+ SK P+++
Sbjct: 1097 PTPSRTETLVE------ETAAESSEDDVVAPSQSLLSGYMTPGLTPANSQASKATPKLDS 1150
Query: 83 LGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP 139
S D P + + AG SPK SG T + P+ G P
Sbjct: 1151 SPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSRKPKKGAGNP 1207
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 37.0 bits (84), Expect = 0.021
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 8 GWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVS 67
G P P G+ + +P SS SD S ET + K SG
Sbjct: 314 GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSD--SEEETPAAKALLQAKASGKTSQV 371
Query: 68 GAASEPSKEEPQ----------------VEQLGSKRMDSLKWDQPISSTQES-GRLEAGG 110
GAAS P+KE P+ Q G + DS + S +E+ + + G
Sbjct: 372 GAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSG 431
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREK 153
+P++R + + R G +P GP A + G++E+
Sbjct: 432 KAPQVRAASAPAKESPRKGAAPAPPRKT-GPAAAQVQVGKQEE 473
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED--VGHPKTKDSGALR--VSGAASEPSKEEPQVEQ 82
P P R ++ E ++A E+ ED V ++ SG + ++ A S+ SK P+++
Sbjct: 1136 PTPSRTETLVE------ETAAESSEDDVVAPSQSLLSGYMTPGLTPANSQASKATPKLDS 1189
Query: 83 LGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP 139
S D P + + AG SPK SG T + P+ G P
Sbjct: 1190 SPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSRKPKKGAGNP 1246
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 37.0 bits (84), Expect = 0.021
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 8 GWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVS 67
G P P G+ + +P SS SD S ET + K SG
Sbjct: 314 GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSD--SEEETPAAKALLQAKASGKTSQV 371
Query: 68 GAASEPSKEEPQ----------------VEQLGSKRMDSLKWDQPISSTQES-GRLEAGG 110
GAAS P+KE P+ Q G + DS + S +E+ + + G
Sbjct: 372 GAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSG 431
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREK 153
+P++R + + R G +P GP A + G++E+
Sbjct: 432 KAPQVRAASAPAKESPRKGAAPAPPRKT-GPAAAQVQVGKQEE 473
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 36.6 bits (83), Expect = 0.027
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 22/167 (13%)
Query: 10 LPRPWGRRKPMRP--DPPYPEPRRV---DSSSENSGSDWDSAPETMEDVGHPKTKDSGAL 64
LP P G P P + P PR + S N GS ++ P P+ D G
Sbjct: 799 LPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPD-GQP 857
Query: 65 RVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGG 124
V G EP Q GS L L+ G R G
Sbjct: 858 GVKGEPGEPG----QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGG------RGTQGPPGA 907
Query: 125 TRRPG----VSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSR 167
T PG V P G PGP PL +PG+ LRG+PG+ R
Sbjct: 908 TGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGP--PGLRGDPGSHGR 952
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 35.0 bits (79), Expect = 0.079
Identities = 46/168 (27%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 6 LGGWLPRPWGRRKPMRPDPPYPE--PRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGA 63
L G + P P R P P+ P + E D P + G+P T +
Sbjct: 1264 LRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPG 1323
Query: 64 LRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSG 123
L+ S P + + G K +P + Q GG P L D G
Sbjct: 1324 LKGSPGLPGPRGDPGERGPRGPK-------GEPGAPGQV-----IGGEGPGLPGRKGDPG 1371
Query: 124 GTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGG 171
+ PG P G L PGP P PG K RGE G P GG
Sbjct: 1372 PSGPPG--PRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGG 1417
Score = 28.5 bits (62), Expect = 7.4
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 108 AGGASPK----LRWDHVDSGGTRRPGVSPEGGLSVPGPGAP--LEKPGRREKLLGWL--R 159
AG A P+ L+ + ++G R P G + +PGP P L P L G +
Sbjct: 2194 AGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGET 2253
Query: 160 GEPGAPSR 167
G+PGAP R
Sbjct: 2254 GKPGAPGR 2261
>gi|30089954 H326 [Homo sapiens]
Length = 597
Score = 35.0 bits (79), Expect = 0.079
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 22 PDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVSGAASEPSKEEPQVE 81
P+ E R D+ E+SG D DS ++MED GH D + E +EE + E
Sbjct: 57 PNRTSTESRGTDT--ESSGEDKDS--DSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEE 112
Query: 82 QLGSKRMDSLKWDQPISSTQESGRLE-----AGGASPKLRWDHVDSGGTRRPGVS 131
Q +R+ + ++ S+ + LE A P+ RW + + R G S
Sbjct: 113 Q-PRRRVQRKRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSS 166
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 80 VEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVP 139
+ ++ K + S W +P E G + + PK W + G R V P G P
Sbjct: 1030 LNRVDGKELPSKSWREP---KPEYGDFQPVSSDPKSPWP---ACGPRNGLVGPLQGCGKP 1083
Query: 140 GPGAPLEKPGRREKL 154
PG P +PGRRE++
Sbjct: 1084 -PGKPSSEPGRREEM 1097
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 34.3 bits (77), Expect = 0.13
Identities = 41/162 (25%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 1 MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENS---GSDWDSAPETMEDVGHPK 57
M L ++ W R K P R D E + + + P+ ED G P+
Sbjct: 155 MTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPE 214
Query: 58 TKDSGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEA-------GG 110
++G A+ + P G + SL D GRL+A GG
Sbjct: 215 GPEAGGAEQKAASGCERLQGPPTPA-GKETEGSLS-DSDFKEPPSEGRLDALQGPPRTGG 272
Query: 111 ASP------KLRWDHVDS--GGTRRPGVSPEGGLSVPGPGAP 144
SP +L D G PG P G PGPG P
Sbjct: 273 PSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP 314
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 33.5 bits (75), Expect = 0.23
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 8 GWLPRPWGRRKPMRPDP-PYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRV 66
G P+ R+ P P P R S+S+ +GS S +T+ G P+ ++ A V
Sbjct: 885 GGSPQEGTRQPGPTPSPGPNSGASRRSSASQGAGSRGLSEEKTLRSGGGPQGQEE-ASGV 943
Query: 67 SGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTR 126
S ++ S E V + +D++ ++PI T E G A GG R
Sbjct: 944 SPSSLPRSSPEAVVREW----LDNIP-EEPILMTYELADETTGAAG----------GGLR 988
Query: 127 RPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPG 163
P V P S+ G G P + G++ L G+PG
Sbjct: 989 GPEVDPGDDHSLEGLGEPAQ-AGQQS-----LEGDPG 1019
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 33.1 bits (74), Expect = 0.30
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 3 LRRLGGWLPRPWGRRKPMRPDPPYP-----------EPRRVDSSSENSGSDWDSAPETME 51
L R GG + P G RP P YP +P++ S + ++ +S+ +
Sbjct: 135 LLRAGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKKTKPSHGSKDANKESSKTSKP 194
Query: 52 DVGHPKTKDSGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQ-PISSTQESGRLEAGG 110
H TK+ + S+ S +E + EQ S + S K + + +++ +A
Sbjct: 195 ---HKVTKEHRERPRKDSESKSSSKELEREQAKSSKDTSRKLGEGRLPKEEKAPPPKAAF 251
Query: 111 ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAP 144
PK+ T+ SP+GG P P P
Sbjct: 252 KEPKMALKE-----TKLESTSPKGGPPPPPPPPP 280
>gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens]
Length = 342
Score = 33.1 bits (74), Expect = 0.30
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 96 PISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEG---GLSVPGPGAPLEKPGR-R 151
P+S S A P VD T+ PG+ P G GL PGA L+K R
Sbjct: 160 PLSEPSRSSTRPPSIADPDPSDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECR 219
Query: 152 EKLLGWLRGEPGAP 165
E+LL E GAP
Sbjct: 220 EELLKDDSSEHGAP 233
>gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens]
Length = 363
Score = 33.1 bits (74), Expect = 0.30
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 96 PISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEG---GLSVPGPGAPLEKPGR-R 151
P+S S A P VD T+ PG+ P G GL PGA L+K R
Sbjct: 181 PLSEPSRSSTRPPSIADPDPSDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECR 240
Query: 152 EKLLGWLRGEPGAP 165
E+LL E GAP
Sbjct: 241 EELLKDDSSEHGAP 254
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 32.7 bits (73), Expect = 0.39
Identities = 38/154 (24%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 23 DPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVSG--AASEPSKEEPQV 80
+P YP P + + E+ G + + A +T+ P+ D G L S AA P
Sbjct: 137 EPSYPMPVQETQAPESPGENSEQALQTLSPRAIPRNPDGGPLESSSDLAALSPLTSSGHQ 196
Query: 81 EQLGSKRMDSLKWDQPISSTQESGRLEA-----GGASPKLRWDHVDSG---GTRRPGVSP 132
EQ D + ST +G + G SP + + + +R PG P
Sbjct: 197 EQ-----------DTELGSTHTAGATSSLTPSRGPVSPSVSFQPLARSTPRASRLPG--P 243
Query: 133 EGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPS 166
G + G PG G G+ GA S
Sbjct: 244 TGSVVSTGTSFSSSSPGLAS--AGAAEGKQGAES 275
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 32.3 bits (72), Expect = 0.51
Identities = 32/120 (26%), Positives = 42/120 (35%), Gaps = 12/120 (10%)
Query: 54 GHPKTKDSGALRVSGAASEPSKEEPQVEQLGSK------RMDSLKWDQPISSTQESGRLE 107
G K G+ G PS + P+ + R+ + +P+ TQ G
Sbjct: 158 GSGKLWKRGSFPAIGLEGRPSLQSPEATSNLCRARNEAFRLQLQRPQRPVGQTQARGYEP 217
Query: 108 AGG--ASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAP 165
G P WD + S G S GL PG PL GRRE G P +P
Sbjct: 218 RTGRDGDPGTNWDVLQSAS----GGSLFLGLPSPGHTRPLPARGRREPEAGESEARPESP 273
>gi|42475941 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 32.3 bits (72), Expect = 0.51
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 25/163 (15%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED---------------VGHPKTKDSGALRVSGAAS 71
P P VD E + + WD+ +T+E G G L S
Sbjct: 90 PSPPEVDHGPEGTLA-WDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDS 148
Query: 72 EPSKEEPQVEQLGSKRMDSLKWDQPISSTQ-ESGRLEAGGASP-----KLRWDHVDSGGT 125
+ + P +E+ + + + + P + G+ ++ A P + D ++S T
Sbjct: 149 PITLQSPHIEEEETTSIATARRGSPGQEEELPQGQPQSPNAPPSPSVGETLGDGINSSQT 208
Query: 126 RRPGVSPEGGLSVPGPGAPL---EKPGRREKLLGWLRGEPGAP 165
+ G SP S+PG G EKP R++ R EP P
Sbjct: 209 KPGGSSPPAHPSLPGDGLTAKASEKPPERKRSERVRRAEPPKP 251
>gi|4827067 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 32.3 bits (72), Expect = 0.51
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 25/163 (15%)
Query: 27 PEPRRVDSSSENSGSDWDSAPETMED---------------VGHPKTKDSGALRVSGAAS 71
P P VD E + + WD+ +T+E G G L S
Sbjct: 90 PSPPEVDHGPEGTLA-WDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDS 148
Query: 72 EPSKEEPQVEQLGSKRMDSLKWDQPISSTQ-ESGRLEAGGASP-----KLRWDHVDSGGT 125
+ + P +E+ + + + + P + G+ ++ A P + D ++S T
Sbjct: 149 PITLQSPHIEEEETTSIATARRGSPGQEEELPQGQPQSPNAPPSPSVGETLGDGINSSQT 208
Query: 126 RRPGVSPEGGLSVPGPGAPL---EKPGRREKLLGWLRGEPGAP 165
+ G SP S+PG G EKP R++ R EP P
Sbjct: 209 KPGGSSPPAHPSLPGDGLTAKASEKPPERKRSERVRRAEPPKP 251
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 32.3 bits (72), Expect = 0.51
Identities = 46/165 (27%), Positives = 58/165 (35%), Gaps = 32/165 (19%)
Query: 2 FLRRLGGWLPRPW-GRRKP----------MRPD-PPYP--EPRRVDSSSENSGSD----- 42
F R GG P W G R+P RPD PP+ P + SS G D
Sbjct: 1170 FPRFEGGRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLP 1229
Query: 43 -----WDSAPET-----MEDVGHPKTKDSGALRVSGAASEPSKEEPQVEQLGSKRMDSLK 92
W P T ME G P G R ++ + + L + D
Sbjct: 1230 PRKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSGRSSSLDGEHHDGYH 1289
Query: 93 WDQPISSTQESGRLEAGGASPKL--RWDHVDSGGTRRPGVSPEGG 135
D+P SG GG S R +++SG RR G S GG
Sbjct: 1290 RDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRR-GASRGGG 1333
>gi|13375913 transmembrane protein 149 [Homo sapiens]
Length = 355
Score = 32.3 bits (72), Expect = 0.51
Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 186 LLELLASALLALCSRPLRAALDTLGLR-----------GPLGLWLHGLLSFLAALHGLHA 234
LL LL+ L +L S+PL LD L + GP G HG LAA +GL A
Sbjct: 234 LLPLLSRELSSLASQPLSRLLDELEVLEELIVLLDPEPGPGGGMAHGTTRHLAARYGLPA 293
Query: 235 VLSLLTAHPLHFACLFGLLQALVLAVSLREPN 266
S A+ L + L+AL+ V REP+
Sbjct: 294 AWSTF-AYSLRPS--RSPLRALIEMVVAREPS 322
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 32.0 bits (71), Expect = 0.67
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 21 RPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGAL-RVSGAASEPSKEEPQ 79
+P P + ++ E+S S+ S P + E PK +++ A+ +S AA+ P+ P
Sbjct: 13 QPQPQQQQRQQQQPQPESSVSEAPSTPLSSET---PKPEENSAVPALSPAAAPPAPNGPD 69
Query: 80 VEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRR-------PGVSP 132
Q+ S + L + QP A GAS + S GT G++P
Sbjct: 70 KMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITP 129
Query: 133 EGG 135
G
Sbjct: 130 VNG 132
>gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo
sapiens]
Length = 311
Score = 32.0 bits (71), Expect = 0.67
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 80 VEQLGSKRMDSLKWDQP--ISSTQESGRLEAGGASPKLRWD---HVDSGGTRRPGVSPEG 134
V+++G R++ + +P + T + GG++P L+ V + G P SP
Sbjct: 12 VQKMGRCRLECGEGLRPCLVDGTVTAAVCLLGGSAPCLQSAPACSVTASGRAAPPSSPHP 71
Query: 135 GLSVPGPGAPLEKPGRREKLLGWLRGEPG 163
G S P G PL RE W G+PG
Sbjct: 72 GASPPAAGRPL-----RETAESWSPGQPG 95
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.0 bits (71), Expect = 0.67
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 30/159 (18%)
Query: 33 DSSSENSGSDWDSAPETMEDVGHPKTKD-------------SGALRVSGAASEPSKEEPQ 79
D +S +SGS A E + + K +G + SE +E+
Sbjct: 660 DGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTT 719
Query: 80 VEQLGSKRM---DSLK-WDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPG-VSPEG 134
V LG++ + DS+ WD + + GR++ GG L+ + G PG P G
Sbjct: 720 VASLGAQTLPGSDSVSTWDGSVRTP--GGRVKEGG----LKGQKGEPGVPGPPGRAGPPG 773
Query: 135 GLSVPGPG------APLEKPGRREKLLGWLRGEPGAPSR 167
+PGP +PL G + + +G PG P R
Sbjct: 774 SPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGR 812
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,141,627
Number of Sequences: 37866
Number of extensions: 892570
Number of successful extensions: 3646
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 3416
Number of HSP's gapped (non-prelim): 407
length of query: 294
length of database: 18,247,518
effective HSP length: 101
effective length of query: 193
effective length of database: 14,423,052
effective search space: 2783649036
effective search space used: 2783649036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.